Wall clock time and date at job start Tue Mar 31 2020 03:29:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86800 * 120.00128 * 2 1
4 4 H 1.48505 * 109.47047 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.47217 * 300.00055 * 3 2 1
6 6 H 1.48494 * 109.46990 * 60.00509 * 3 2 1
7 7 C 1.37884 * 119.99770 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99448 * 173.03345 * 7 2 1
9 9 C 1.50697 * 119.99929 * 353.03285 * 7 2 1
10 10 C 1.53005 * 115.55681 * 88.62376 * 9 7 2
11 11 S 1.81393 * 109.47262 * 40.07495 * 10 9 7
12 12 O 1.42095 * 110.54412 * 284.14180 * 11 10 9
13 13 O 1.42101 * 110.54782 * 60.89907 * 11 10 9
14 14 N 1.65606 * 104.44985 * 172.52324 * 11 10 9
15 15 C 1.46498 * 120.00280 * 64.99456 * 14 11 10
16 16 H 1.09004 * 110.34092 * 22.72007 * 15 14 11
17 17 C 1.51099 * 110.38852 * 260.30955 * 15 14 11
18 18 C 1.30525 * 111.10158 * 257.62182 * 17 15 14
19 19 C 1.51098 * 111.10520 * 359.97438 * 18 17 15
20 20 H 1.08999 * 110.48405 * 224.70162 * 19 18 17
21 21 C 1.52997 * 110.38667 * 102.37567 * 19 18 17
22 22 O 1.42906 * 109.47429 * 69.69864 * 21 19 18
23 23 C 1.54631 * 110.38665 * 145.00176 * 15 14 11
24 24 C 1.52990 * 117.50171 * 302.93216 * 9 7 2
25 25 C 1.52989 * 60.03299 * 252.49891 * 24 9 7
26 26 H 0.97003 * 120.00167 * 5.00447 * 1 2 3
27 27 H 1.09008 * 109.46539 * 160.07122 * 10 9 7
28 28 H 1.08996 * 109.47265 * 280.07156 * 10 9 7
29 29 H 0.96998 * 119.99668 * 245.00551 * 14 11 10
30 30 H 1.07998 * 124.45050 * 77.60357 * 17 15 14
31 31 H 1.08005 * 124.44741 * 179.97438 * 18 17 15
32 32 H 1.09002 * 109.47693 * 189.69792 * 21 19 18
33 33 H 1.09000 * 109.47309 * 309.69851 * 21 19 18
34 34 H 0.96699 * 113.99875 * 180.02562 * 22 21 19
35 35 H 1.09002 * 111.03583 * 212.21639 * 23 15 14
36 36 H 1.09002 * 111.03791 * 336.10690 * 23 15 14
37 37 H 1.09000 * 117.49780 * 0.02562 * 24 9 7
38 38 H 1.09000 * 117.49729 * 144.99774 * 24 9 7
39 39 H 1.08998 * 117.50230 * 107.50177 * 25 24 9
40 40 H 1.09008 * 117.50025 * 252.51862 * 25 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8905 2.3963 1.2125
7 6 2.0044 -1.1941 -0.0005
8 1 3.0784 -1.1975 -0.1140
9 6 1.2592 -2.4944 0.1572
10 6 0.7593 -3.1304 -1.1415
11 16 2.0214 -2.9442 -2.4310
12 8 2.0374 -1.6118 -2.9244
13 8 3.2237 -3.5990 -2.0503
14 7 1.4513 -3.8427 -3.7000
15 6 0.2149 -3.4483 -4.3798
16 1 0.0193 -2.3872 -4.2249
17 6 -0.9463 -4.2781 -3.8836
18 6 -1.2567 -5.2120 -4.7409
19 6 -0.3547 -5.1604 -5.9520
20 1 -0.9380 -5.2650 -6.8668
21 6 0.7091 -6.2571 -5.8713
22 8 0.0915 -7.5338 -6.0461
23 6 0.3067 -3.7642 -5.8907
24 6 0.3930 -2.6652 1.4066
25 6 1.7085 -3.4355 1.2777
26 1 -0.4850 0.8368 -0.0733
27 1 0.5632 -4.1897 -0.9752
28 1 -0.1592 -2.6362 -1.4580
29 1 1.9359 -4.6301 -3.9930
30 1 -1.4527 -4.1194 -2.9430
31 1 -2.0537 -5.9277 -4.6028
32 1 1.4510 -6.1021 -6.6548
33 1 1.1965 -6.2196 -4.8971
34 1 0.7079 -8.2777 -6.0062
35 1 -0.2570 -3.0386 -6.4771
36 1 1.3451 -3.8073 -6.2191
37 1 0.3618 -1.8368 2.1144
38 1 -0.5333 -3.2303 1.3034
39 1 2.5431 -3.1142 1.9008
40 1 1.6477 -4.5075 1.0892
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000572542765.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:29:48
Heat of formation + Delta-G solvation = -80.213147 kcal
Electronic energy + Delta-G solvation = -23593.841979 eV
Core-core repulsion = 20115.903910 eV
Total energy + Delta-G solvation = -3477.938069 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 301.118 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-39.61469 -36.71376 -36.57263 -36.07155 -34.92449 -33.11482 -32.03189 -29.90871
-28.16428 -27.71651 -25.45466 -24.10255 -21.17626 -20.64978 -19.80088 -18.81149
-18.60932 -17.55678 -17.08053 -16.58414 -16.09519 -15.43863 -15.03168 -14.76045
-14.70608 -14.48278 -14.07406 -13.68158 -13.06791 -12.59497 -12.53749 -12.17384
-12.00353 -11.79301 -11.70456 -11.47006 -11.30053 -11.12386 -11.01233 -10.96960
-10.89928 -10.75502 -10.49943 -10.33945 -10.15068 -10.06259 -9.72776 -9.25467
-9.15272 -8.91416 -8.52106 -8.10057 -6.15540 -4.29996 1.18535 2.18859
3.31142 3.39667 3.45473 3.66315 3.96156 4.39856 4.44231 4.59171
4.74088 4.89907 5.00839 5.07352 5.15788 5.17998 5.26354 5.31468
5.40211 5.52480 5.59537 5.75388 5.82696 5.88681 6.00624 6.02423
6.29026 6.34622 6.37828 6.45933 6.62890 6.71979 6.81112 6.97499
7.19520 7.31584 7.40141 7.42856 7.78791 8.19483 8.78848 9.46650
10.91788
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.021648 B = 0.004867 C = 0.004640
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1293.137762 B = 5751.437565 C = 6033.039862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.867 5.867
2 C 0.096 3.904
3 Si 0.892 3.108
4 H -0.268 1.268
5 H -0.278 1.278
6 H -0.282 1.282
7 C -0.541 4.541
8 H 0.069 0.931
9 C 0.048 3.952
10 C -0.558 4.558
11 S 2.622 3.378
12 O -0.944 6.944
13 O -0.977 6.977
14 N -1.125 6.125
15 C 0.166 3.834
16 H 0.105 0.895
17 C -0.181 4.181
18 C -0.137 4.137
19 C -0.072 4.072
20 H 0.086 0.914
21 C 0.084 3.916
22 O -0.573 6.573
23 C -0.123 4.123
24 C -0.140 4.140
25 C -0.206 4.206
26 H 0.264 0.736
27 H 0.097 0.903
28 H 0.126 0.874
29 H 0.404 0.596
30 H 0.132 0.868
31 H 0.126 0.874
32 H 0.048 0.952
33 H 0.050 0.950
34 H 0.378 0.622
35 H 0.090 0.910
36 H 0.084 0.916
37 H 0.086 0.914
38 H 0.064 0.936
39 H 0.084 0.916
40 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.630 -11.152 -10.675 15.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.501 5.501
2 C -0.111 4.111
3 Si 0.719 3.281
4 H -0.192 1.192
5 H -0.203 1.203
6 H -0.208 1.208
7 C -0.578 4.578
8 H 0.087 0.913
9 C 0.046 3.954
10 C -0.690 4.690
11 S 2.719 3.281
12 O -0.933 6.933
13 O -0.967 6.967
14 N -0.880 5.880
15 C 0.058 3.942
16 H 0.123 0.877
17 C -0.201 4.201
18 C -0.156 4.156
19 C -0.090 4.090
20 H 0.104 0.896
21 C 0.006 3.994
22 O -0.378 6.378
23 C -0.162 4.162
24 C -0.178 4.178
25 C -0.243 4.243
26 H 0.074 0.926
27 H 0.115 0.885
28 H 0.144 0.856
29 H 0.237 0.763
30 H 0.150 0.850
31 H 0.144 0.856
32 H 0.066 0.934
33 H 0.068 0.932
34 H 0.225 0.775
35 H 0.108 0.892
36 H 0.103 0.897
37 H 0.105 0.895
38 H 0.083 0.917
39 H 0.103 0.897
40 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -2.584 -9.976 -10.646 14.816
hybrid contribution 0.268 -0.174 0.250 0.406
sum -2.315 -10.150 -10.395 14.712
Atomic orbital electron populations
1.69969 1.06148 1.27320 1.46635 1.24905 0.94737 0.99286 0.92220
0.86519 0.80800 0.83159 0.77652 1.19199 1.20319 1.20834 1.20627
0.93638 0.88810 1.54739 0.91300 1.18206 0.99383 0.94011 0.83822
1.30006 1.17226 1.06234 1.15571 1.04688 0.75661 0.73617 0.74169
1.93526 1.86318 1.35628 1.77876 1.93483 1.43382 1.76406 1.83446
1.56274 1.35485 1.44704 1.51528 1.20494 0.82416 0.99443 0.91797
0.87672 1.23867 0.97853 0.98102 1.00256 1.23158 0.98918 0.98015
0.95532 1.21031 0.95633 0.93700 0.98638 0.89603 1.22298 0.94282
0.83087 0.99700 1.86469 1.39309 1.15938 1.96089 1.22738 1.02051
0.95634 0.95733 1.22481 0.91729 1.00820 1.02808 1.23154 0.99260
0.95662 1.06220 0.92619 0.88454 0.85596 0.76320 0.85023 0.85621
0.93354 0.93229 0.77524 0.89160 0.89716 0.89549 0.91701 0.89725
0.91355
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -23.85 12.78 55.43 0.71 -23.15 16
2 C 0.10 2.63 5.37 -17.82 -0.10 2.53 16
3 Si 0.89 21.82 29.55 -169.99 -5.02 16.80 16
4 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16
5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
7 C -0.54 -14.86 6.98 -34.44 -0.24 -15.10 16
8 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16
9 C 0.05 1.17 1.71 -155.63 -0.27 0.90 16
10 C -0.56 -11.55 6.18 37.16 0.23 -11.32 16
11 S 2.62 54.41 4.58 -107.50 -0.49 53.92 16
12 O -0.94 -23.00 16.66 -57.54 -0.96 -23.96 16
13 O -0.98 -22.51 18.08 -57.54 -1.04 -23.55 16
14 N -1.13 -16.99 5.38 -4.98 -0.03 -17.01 16
15 C 0.17 2.25 3.46 -68.03 -0.24 2.01 16
16 H 0.11 1.56 7.54 -51.93 -0.39 1.17 16
17 C -0.18 -2.26 10.41 -35.70 -0.37 -2.63 16
18 C -0.14 -1.53 9.97 -35.70 -0.36 -1.89 16
19 C -0.07 -0.73 3.18 -90.73 -0.29 -1.02 16
20 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
21 C 0.08 0.79 6.30 37.16 0.23 1.03 16
22 O -0.57 -5.47 13.55 -35.23 -0.48 -5.95 16
23 C -0.12 -1.31 6.36 -25.03 -0.16 -1.46 16
24 C -0.14 -3.19 9.26 -26.74 -0.25 -3.44 16
25 C -0.21 -4.50 9.88 -26.70 -0.26 -4.76 16
26 H 0.26 6.91 8.32 -40.82 -0.34 6.58 16
27 H 0.10 1.70 7.95 -51.92 -0.41 1.28 16
28 H 0.13 2.59 8.14 -51.93 -0.42 2.17 16
29 H 0.40 5.21 7.18 -34.47 -0.25 4.97 16
30 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16
31 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16
32 H 0.05 0.39 8.10 -51.93 -0.42 -0.04 16
33 H 0.05 0.48 6.54 -51.93 -0.34 0.14 16
34 H 0.38 1.97 9.12 45.56 0.42 2.39 16
35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16
36 H 0.08 0.84 7.81 -51.93 -0.41 0.44 16
37 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16
38 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16
39 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16
40 H 0.07 1.32 8.09 -51.92 -0.42 0.90 16
LS Contribution 344.40 15.07 5.19 5.19
Total: -1.00 -33.81 344.40 -9.33 -43.14
By element:
Atomic # 1 Polarization: 14.86 SS G_CDS: -5.15 Total: 9.71 kcal
Atomic # 6 Polarization: -33.08 SS G_CDS: -2.06 Total: -35.14 kcal
Atomic # 7 Polarization: -40.84 SS G_CDS: 0.68 Total: -40.16 kcal
Atomic # 8 Polarization: -50.98 SS G_CDS: -2.48 Total: -53.45 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal
Atomic # 16 Polarization: 54.41 SS G_CDS: -0.49 Total: 53.92 kcal
Total LS contribution 5.19 Total: 5.19 kcal
Total: -33.81 -9.33 -43.14 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000572542765.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.075 kcal
(2) G-P(sol) polarization free energy of solvation -33.810 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.885 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal
(6) G-S(sol) free energy of system = (1) + (5) -80.213 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds