Wall clock time and date at job start Tue Mar 31 2020 03:29:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31507 * 1
3 3 Si 1.86800 * 120.00128 * 2 1
4 4 H 1.48505 * 109.47047 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.47217 * 300.00055 * 3 2 1
6 6 H 1.48494 * 109.46990 * 60.00509 * 3 2 1
7 7 C 1.37884 * 119.99770 * 180.02562 * 2 1 3
8 8 H 1.07996 * 119.99448 * 173.03345 * 7 2 1
9 9 C 1.50697 * 119.99929 * 353.03285 * 7 2 1
10 10 C 1.53005 * 115.55681 * 88.62376 * 9 7 2
11 11 S 1.81393 * 109.47262 * 40.07495 * 10 9 7
12 12 O 1.42095 * 110.54412 * 284.14180 * 11 10 9
13 13 O 1.42101 * 110.54782 * 60.89907 * 11 10 9
14 14 N 1.65606 * 104.44985 * 172.52324 * 11 10 9
15 15 C 1.46498 * 120.00280 * 64.99456 * 14 11 10
16 16 H 1.09004 * 110.34092 * 22.72007 * 15 14 11
17 17 C 1.51099 * 110.38852 * 260.30955 * 15 14 11
18 18 C 1.30525 * 111.10158 * 257.62182 * 17 15 14
19 19 C 1.51098 * 111.10520 * 359.97438 * 18 17 15
20 20 H 1.08999 * 110.48405 * 224.70162 * 19 18 17
21 21 C 1.52997 * 110.38667 * 102.37567 * 19 18 17
22 22 O 1.42906 * 109.47429 * 69.69864 * 21 19 18
23 23 C 1.54631 * 110.38665 * 145.00176 * 15 14 11
24 24 C 1.52990 * 117.50171 * 302.93216 * 9 7 2
25 25 C 1.52989 * 60.03299 * 252.49891 * 24 9 7
26 26 H 0.97003 * 120.00167 * 5.00447 * 1 2 3
27 27 H 1.09008 * 109.46539 * 160.07122 * 10 9 7
28 28 H 1.08996 * 109.47265 * 280.07156 * 10 9 7
29 29 H 0.96998 * 119.99668 * 245.00551 * 14 11 10
30 30 H 1.07998 * 124.45050 * 77.60357 * 17 15 14
31 31 H 1.08005 * 124.44741 * 179.97438 * 18 17 15
32 32 H 1.09002 * 109.47693 * 189.69792 * 21 19 18
33 33 H 1.09000 * 109.47309 * 309.69851 * 21 19 18
34 34 H 0.96699 * 113.99875 * 180.02562 * 22 21 19
35 35 H 1.09002 * 111.03583 * 212.21639 * 23 15 14
36 36 H 1.09002 * 111.03791 * 336.10690 * 23 15 14
37 37 H 1.09000 * 117.49780 * 0.02562 * 24 9 7
38 38 H 1.09000 * 117.49729 * 144.99774 * 24 9 7
39 39 H 1.08998 * 117.50230 * 107.50177 * 25 24 9
40 40 H 1.09008 * 117.50025 * 252.51862 * 25 24 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7091 1.3463 -0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8905 2.3963 1.2125
7 6 2.0044 -1.1941 -0.0005
8 1 3.0784 -1.1975 -0.1140
9 6 1.2592 -2.4944 0.1572
10 6 0.7593 -3.1304 -1.1415
11 16 2.0214 -2.9442 -2.4310
12 8 2.0374 -1.6118 -2.9244
13 8 3.2237 -3.5990 -2.0503
14 7 1.4513 -3.8427 -3.7000
15 6 0.2149 -3.4483 -4.3798
16 1 0.0193 -2.3872 -4.2249
17 6 -0.9463 -4.2781 -3.8836
18 6 -1.2567 -5.2120 -4.7409
19 6 -0.3547 -5.1604 -5.9520
20 1 -0.9380 -5.2650 -6.8668
21 6 0.7091 -6.2571 -5.8713
22 8 0.0915 -7.5338 -6.0461
23 6 0.3067 -3.7642 -5.8907
24 6 0.3930 -2.6652 1.4066
25 6 1.7085 -3.4355 1.2777
26 1 -0.4850 0.8368 -0.0733
27 1 0.5632 -4.1897 -0.9752
28 1 -0.1592 -2.6362 -1.4580
29 1 1.9359 -4.6301 -3.9930
30 1 -1.4527 -4.1194 -2.9430
31 1 -2.0537 -5.9277 -4.6028
32 1 1.4510 -6.1021 -6.6548
33 1 1.1965 -6.2196 -4.8971
34 1 0.7079 -8.2777 -6.0062
35 1 -0.2570 -3.0386 -6.4771
36 1 1.3451 -3.8073 -6.2191
37 1 0.3618 -1.8368 2.1144
38 1 -0.5333 -3.2303 1.3034
39 1 2.5431 -3.1142 1.9008
40 1 1.6477 -4.5075 1.0892
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000572542765.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:29:47
Heat of formation + Delta-G solvation = -106.355306 kcal
Electronic energy + Delta-G solvation = -23594.975588 eV
Core-core repulsion = 20115.903910 eV
Total energy + Delta-G solvation = -3479.071678 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 301.118 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-40.52383 -38.53265 -37.86174 -37.26921 -36.68219 -34.28571 -34.07076 -30.77384
-29.83418 -28.66940 -27.49208 -24.95479 -22.95019 -21.60753 -21.52672 -20.34356
-19.60148 -18.73426 -18.31330 -18.09463 -17.44540 -16.88185 -16.61005 -16.45224
-16.00101 -15.62137 -15.37664 -15.01396 -14.86371 -13.94865 -13.77895 -13.58166
-13.54838 -13.05694 -12.93081 -12.88361 -12.84639 -12.77559 -12.68352 -12.44475
-12.40375 -12.12239 -12.07444 -11.88183 -11.77865 -11.55874 -10.90181 -10.81455
-10.56644 -10.41248 -10.07417 -9.89656 -8.22932 -6.40499 -0.42661 1.23852
1.34617 1.39380 1.48406 2.24749 2.38985 3.03531 3.07675 3.26830
3.35605 3.52121 3.63254 3.81741 3.99211 4.10121 4.20265 4.30675
4.41056 4.46630 4.53180 4.60503 4.61712 4.68857 4.80493 4.85156
4.91377 4.99049 5.06125 5.12040 5.20202 5.33232 5.41717 5.56292
5.62363 5.68190 5.89240 6.19088 6.21013 6.68851 6.92587 7.36760
8.83913
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.021648 B = 0.004867 C = 0.004640
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1293.137762 B = 5751.437565 C = 6033.039862
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.883 5.883
2 C 0.058 3.942
3 Si 0.928 3.072
4 H -0.272 1.272
5 H -0.277 1.277
6 H -0.267 1.267
7 C -0.555 4.555
8 H 0.046 0.954
9 C 0.012 3.988
10 C -0.551 4.551
11 S 2.633 3.367
12 O -0.988 6.988
13 O -1.005 7.005
14 N -1.106 6.106
15 C 0.156 3.844
16 H 0.085 0.915
17 C -0.201 4.201
18 C -0.120 4.120
19 C -0.072 4.072
20 H 0.097 0.903
21 C 0.082 3.918
22 O -0.588 6.588
23 C -0.118 4.118
24 C -0.136 4.136
25 C -0.192 4.192
26 H 0.267 0.733
27 H 0.133 0.867
28 H 0.123 0.877
29 H 0.417 0.583
30 H 0.129 0.871
31 H 0.136 0.864
32 H 0.065 0.935
33 H 0.045 0.955
34 H 0.396 0.604
35 H 0.104 0.896
36 H 0.093 0.907
37 H 0.063 0.937
38 H 0.086 0.914
39 H 0.079 0.921
40 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.279 -12.872 -11.707 17.706
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.518 5.518
2 C -0.147 4.147
3 Si 0.753 3.247
4 H -0.197 1.197
5 H -0.203 1.203
6 H -0.192 1.192
7 C -0.593 4.593
8 H 0.065 0.935
9 C 0.010 3.990
10 C -0.684 4.684
11 S 2.730 3.270
12 O -0.978 6.978
13 O -0.995 6.995
14 N -0.865 5.865
15 C 0.049 3.951
16 H 0.103 0.897
17 C -0.220 4.220
18 C -0.139 4.139
19 C -0.090 4.090
20 H 0.115 0.885
21 C 0.005 3.995
22 O -0.396 6.396
23 C -0.157 4.157
24 C -0.175 4.175
25 C -0.229 4.229
26 H 0.076 0.924
27 H 0.151 0.849
28 H 0.142 0.858
29 H 0.253 0.747
30 H 0.147 0.853
31 H 0.154 0.846
32 H 0.084 0.916
33 H 0.063 0.937
34 H 0.246 0.754
35 H 0.122 0.878
36 H 0.111 0.889
37 H 0.082 0.918
38 H 0.104 0.896
39 H 0.097 0.903
40 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -3.213 -11.711 -11.669 16.841
hybrid contribution 0.451 0.272 0.521 0.741
sum -2.762 -11.438 -11.148 16.209
Atomic orbital electron populations
1.69998 1.06595 1.27878 1.47308 1.25436 0.95524 1.01430 0.92356
0.85966 0.79676 0.80890 0.78162 1.19680 1.20261 1.19216 1.20751
0.92898 0.90861 1.54779 0.93545 1.18370 1.00765 0.94045 0.85857
1.29867 1.16642 1.08116 1.13738 1.04016 0.75323 0.72962 0.74687
1.93468 1.86979 1.38562 1.78805 1.93432 1.45223 1.76607 1.84277
1.55716 1.36307 1.44550 1.49955 1.20713 0.81907 0.98707 0.93758
0.89669 1.23757 0.98233 0.99048 1.01009 1.23364 0.98446 0.96910
0.95208 1.21067 0.95794 0.93626 0.98549 0.88502 1.22296 0.94148
0.82955 1.00134 1.86418 1.40529 1.16580 1.96095 1.22774 1.03046
0.96460 0.93442 1.22411 0.93075 1.00613 1.01414 1.23231 0.98401
0.97011 1.04285 0.92399 0.84898 0.85833 0.74713 0.85283 0.84589
0.91647 0.93677 0.75442 0.87768 0.88856 0.91798 0.89577 0.90269
0.88191
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -49.00 12.78 21.45 0.27 -48.73 16
2 C 0.06 3.20 5.37 84.66 0.45 3.66 16
3 Si 0.93 45.02 29.55 68.60 2.03 47.05 16
4 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16
5 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16
6 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16
7 C -0.56 -31.03 6.98 25.60 0.18 -30.85 16
8 H 0.05 2.73 7.82 -2.91 -0.02 2.70 16
9 C 0.01 0.56 1.71 -52.91 -0.09 0.47 16
10 C -0.55 -22.30 6.18 71.98 0.44 -21.85 16
11 S 2.63 109.14 4.58 -56.49 -0.26 108.88 16
12 O -0.99 -49.29 16.66 -127.65 -2.13 -51.42 16
13 O -1.00 -46.22 18.08 -127.65 -2.31 -48.53 16
14 N -1.11 -32.18 5.38 -169.66 -0.91 -33.09 16
15 C 0.16 4.05 3.46 44.93 0.16 4.21 16
16 H 0.09 2.56 7.54 -2.39 -0.02 2.54 16
17 C -0.20 -4.68 10.41 26.26 0.27 -4.40 16
18 C -0.12 -2.39 9.97 26.26 0.26 -2.12 16
19 C -0.07 -1.26 3.18 -10.86 -0.03 -1.30 16
20 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
21 C 0.08 1.31 6.30 71.98 0.45 1.76 16
22 O -0.59 -9.44 13.55 -148.98 -2.02 -11.46 16
23 C -0.12 -2.26 6.36 31.70 0.20 -2.06 16
24 C -0.14 -6.10 9.26 30.59 0.28 -5.82 16
25 C -0.19 -8.12 9.88 30.61 0.30 -7.82 16
26 H 0.27 14.06 8.32 -92.71 -0.77 13.29 16
27 H 0.13 4.30 7.95 -2.39 -0.02 4.28 16
28 H 0.12 5.05 8.14 -2.39 -0.02 5.03 16
29 H 0.42 10.04 7.18 -96.75 -0.69 9.35 16
30 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16
31 H 0.14 2.45 8.06 -2.91 -0.02 2.42 16
32 H 0.07 0.82 8.10 -2.39 -0.02 0.80 16
33 H 0.05 0.75 6.54 -2.39 -0.02 0.73 16
34 H 0.40 2.99 9.12 -74.06 -0.68 2.32 16
35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
36 H 0.09 1.63 7.81 -2.39 -0.02 1.61 16
37 H 0.06 3.11 8.14 -2.39 -0.02 3.10 16
38 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16
39 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16
40 H 0.10 3.56 8.09 -2.38 -0.02 3.54 16
Total: -1.00 -72.61 344.40 -2.75 -75.37
By element:
Atomic # 1 Polarization: 28.39 SS G_CDS: -0.32 Total: 28.07 kcal
Atomic # 6 Polarization: -69.02 SS G_CDS: 2.89 Total: -66.14 kcal
Atomic # 7 Polarization: -81.19 SS G_CDS: -0.64 Total: -81.82 kcal
Atomic # 8 Polarization: -104.95 SS G_CDS: -6.45 Total: -111.40 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal
Atomic # 16 Polarization: 109.14 SS G_CDS: -0.26 Total: 108.88 kcal
Total: -72.61 -2.75 -75.37 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000572542765.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.986 kcal
(2) G-P(sol) polarization free energy of solvation -72.615 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.601 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.370 kcal
(6) G-S(sol) free energy of system = (1) + (5) -106.355 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds