Wall clock time and date at job start Tue Mar 31 2020 03:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00259 * 2 1 4 4 H 1.48505 * 109.46738 * 269.99700 * 3 2 1 5 5 H 1.48501 * 109.47307 * 29.99690 * 3 2 1 6 6 H 1.48501 * 109.47103 * 149.99760 * 3 2 1 7 7 C 1.37883 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99665 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99874 * 179.97438 * 7 2 1 10 10 S 1.81405 * 109.47025 * 180.02562 * 9 7 2 11 11 O 1.42093 * 110.54145 * 68.37634 * 10 9 7 12 12 O 1.42098 * 110.53935 * 291.62679 * 10 9 7 13 13 N 1.65598 * 104.45088 * 180.02562 * 10 9 7 14 14 C 1.46504 * 119.99885 * 65.00072 * 13 10 9 15 15 H 1.09002 * 112.82991 * 16.60998 * 14 13 10 16 16 C 1.53855 * 113.58749 * 245.49918 * 14 13 10 17 17 H 1.09000 * 116.71428 * 150.32141 * 16 14 13 18 18 C 1.54415 * 113.76250 * 13.28655 * 16 14 13 19 19 C 1.54450 * 104.15468 * 266.14539 * 18 16 14 20 20 O 1.44357 * 104.80412 * 24.37850 * 19 18 16 21 21 C 1.44261 * 105.49729 * 319.48135 * 20 19 18 22 22 H 1.09002 * 114.87984 * 270.94362 * 21 20 19 23 23 C 1.52820 * 113.71315 * 134.16768 * 21 20 19 24 24 C 1.52990 * 121.06031 * 152.47861 * 23 21 20 25 25 C 1.53934 * 86.80510 * 209.49560 * 24 23 21 26 26 C 1.52971 * 121.07797 * 44.14750 * 23 21 20 27 27 H 0.97002 * 119.99582 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47037 * 60.00488 * 9 7 2 29 29 H 1.09001 * 109.47537 * 300.00425 * 9 7 2 30 30 H 0.97000 * 120.00233 * 245.00186 * 13 10 9 31 31 H 1.09008 * 110.49304 * 147.48346 * 18 16 14 32 32 H 1.08994 * 110.61092 * 24.87328 * 18 16 14 33 33 H 1.08993 * 110.37427 * 265.54146 * 19 18 16 34 34 H 1.08998 * 110.46050 * 143.25555 * 19 18 16 35 35 H 1.08995 * 113.65916 * 323.98024 * 24 23 21 36 36 H 1.09008 * 113.65423 * 95.01863 * 24 23 21 37 37 H 1.08997 * 113.58434 * 270.18851 * 25 24 23 38 38 H 1.09000 * 113.65012 * 139.39852 * 25 24 23 39 39 H 1.09006 * 113.65808 * 264.96853 * 26 23 21 40 40 H 1.09002 * 113.66564 * 35.91218 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0000 10 16 4.1161 -2.9045 0.0001 11 8 3.8195 -3.5383 -1.2366 12 8 3.8204 -3.5377 1.2373 13 7 5.7657 -2.7596 0.0001 14 6 6.4485 -2.1613 1.1500 15 1 5.8200 -2.1181 2.0396 16 6 7.1490 -0.8303 0.8260 17 1 7.2316 -0.1094 1.6393 18 6 6.7351 -0.2241 -0.5325 19 6 7.8034 -0.7441 -1.5193 20 8 8.3066 -1.9543 -0.9142 21 6 8.4145 -1.6646 0.4949 22 1 9.3698 -1.2402 0.8040 23 6 7.8524 -2.7654 1.3935 24 6 8.3883 -2.9781 2.8106 25 6 8.0188 -4.4621 2.6350 26 6 8.1523 -4.2399 1.1176 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6798 0.8895 29 1 3.8746 -0.6809 -0.8905 30 1 6.2800 -3.0709 -0.7611 31 1 6.7559 0.8649 -0.4867 32 1 5.7446 -0.5740 -0.8231 33 1 8.6048 -0.0138 -1.6305 34 1 7.3533 -0.9628 -2.4877 35 1 9.4599 -2.8021 2.9040 36 1 7.8056 -2.4703 3.5793 37 1 7.0038 -4.6995 2.9534 38 1 8.7612 -5.1486 3.0421 39 1 7.3810 -4.7411 0.5326 40 1 9.1572 -4.4178 0.7346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579798685.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:50 Heat of formation + Delta-G solvation = -93.096204 kcal Electronic energy + Delta-G solvation = -24398.737678 eV Core-core repulsion = 20920.240958 eV Total energy + Delta-G solvation = -3478.496720 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.38225 -38.57797 -38.04039 -36.91033 -35.74862 -35.33820 -32.80218 -31.92341 -31.32427 -26.53482 -25.54714 -25.34681 -25.05010 -22.80723 -21.17980 -20.32002 -19.62407 -19.43620 -18.25599 -17.48723 -17.19804 -17.03512 -16.93411 -16.34711 -16.06114 -15.92157 -15.23046 -15.03452 -14.70540 -14.42787 -14.31762 -13.57419 -13.56162 -13.34134 -13.14122 -13.11693 -13.03115 -12.89591 -12.61689 -12.51381 -12.36513 -12.22037 -12.02915 -11.85248 -11.73203 -11.43160 -11.19327 -11.18297 -10.92598 -10.81931 -10.35423 -10.17176 -8.44394 -6.61758 -0.53879 1.33671 1.37291 1.48825 1.96343 2.28485 2.76145 2.86502 2.92822 3.20369 3.37932 3.55883 3.63278 3.79019 3.92837 4.01034 4.10544 4.20484 4.34411 4.37847 4.41750 4.47451 4.54724 4.64764 4.66827 4.83473 4.92383 4.95238 4.97318 5.08805 5.11986 5.13525 5.18972 5.26436 5.32350 5.52771 5.58212 5.81282 6.01751 6.18641 6.42781 7.06912 8.71001 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.018224 B = 0.006142 C = 0.005433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.029547 B = 4557.970160 C = 5152.410422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.024 3.976 3 Si 0.951 3.049 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.221 1.221 7 C -0.556 4.556 8 H 0.035 0.965 9 C -0.474 4.474 10 S 2.622 3.378 11 O -1.008 7.008 12 O -1.002 7.002 13 N -1.086 6.086 14 C 0.143 3.857 15 H 0.102 0.898 16 C -0.150 4.150 17 H 0.143 0.857 18 C -0.163 4.163 19 C 0.047 3.953 20 O -0.376 6.376 21 C 0.072 3.928 22 H 0.113 0.887 23 C -0.106 4.106 24 C -0.093 4.093 25 C -0.145 4.145 26 C -0.122 4.122 27 H 0.276 0.724 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.422 0.578 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.783 2.417 3.665 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.143 1.143 7 C -0.595 4.595 8 H 0.053 0.947 9 C -0.607 4.607 10 S 2.720 3.280 11 O -0.998 6.998 12 O -0.992 6.992 13 N -0.845 5.845 14 C 0.034 3.966 15 H 0.120 0.880 16 C -0.171 4.171 17 H 0.161 0.839 18 C -0.201 4.201 19 C -0.030 4.030 20 O -0.295 6.295 21 C 0.015 3.985 22 H 0.131 0.869 23 C -0.108 4.108 24 C -0.131 4.131 25 C -0.183 4.183 26 C -0.160 4.160 27 H 0.085 0.915 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.260 0.740 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 23.084 1.493 3.685 23.424 hybrid contribution -0.600 0.961 -0.593 1.278 sum 22.484 2.454 3.092 22.828 Atomic orbital electron populations 1.70032 1.08695 1.29302 1.49109 1.26070 0.95680 1.03950 0.92023 0.85649 0.80509 0.76601 0.80147 1.18272 1.20536 1.14336 1.20331 0.88290 0.94763 1.56099 0.94721 1.28283 1.04537 1.20140 1.07767 1.04350 0.72768 0.78373 0.72549 1.93452 1.83902 1.75633 1.46847 1.93451 1.84048 1.74683 1.47014 1.55136 1.24414 1.77016 1.27978 1.21944 0.93554 0.93259 0.87824 0.88039 1.24587 0.96860 0.96130 0.99499 0.83933 1.23052 1.00159 1.02288 0.94592 1.23571 0.95600 0.86756 0.97040 1.88952 1.86282 1.35064 1.19244 1.23981 0.97691 0.95155 0.81679 0.86939 1.23271 0.94346 0.95147 0.98028 1.22593 1.02414 0.95533 0.92527 1.22860 1.01664 0.97764 0.95970 1.22574 1.01779 0.94686 0.96969 0.91492 0.87156 0.87550 0.74011 0.88636 0.91864 0.90275 0.89120 0.86953 0.90075 0.91746 0.89813 0.93385 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.96 21.45 0.30 -56.68 16 2 C 0.02 1.36 5.47 84.66 0.46 1.82 16 3 Si 0.95 39.67 27.47 68.60 1.88 41.55 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 6 H -0.22 -7.73 6.54 99.48 0.65 -7.08 16 7 C -0.56 -31.65 9.68 25.60 0.25 -31.40 16 8 H 0.03 2.24 7.96 -2.91 -0.02 2.21 16 9 C -0.47 -20.41 3.86 71.24 0.27 -20.13 16 10 S 2.62 110.32 5.35 -56.49 -0.30 110.01 16 11 O -1.01 -49.07 18.08 -127.65 -2.31 -51.38 16 12 O -1.00 -47.83 17.56 -127.65 -2.24 -50.07 16 13 N -1.09 -33.35 3.38 -165.68 -0.56 -33.91 16 14 C 0.14 3.56 4.20 45.88 0.19 3.75 16 15 H 0.10 2.65 7.74 -2.39 -0.02 2.63 16 16 C -0.15 -2.83 5.06 -9.29 -0.05 -2.88 16 17 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 18 C -0.16 -3.31 6.29 31.57 0.20 -3.11 16 19 C 0.05 0.87 7.63 72.47 0.55 1.42 16 20 O -0.38 -8.26 9.68 -148.98 -1.44 -9.70 16 21 C 0.07 1.29 5.09 31.27 0.16 1.45 16 22 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 23 C -0.11 -2.09 0.92 -51.66 -0.05 -2.14 16 24 C -0.09 -1.39 7.85 30.91 0.24 -1.14 16 25 C -0.15 -2.73 8.08 31.22 0.25 -2.48 16 26 C -0.12 -2.61 7.61 30.90 0.24 -2.38 16 27 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 28 H 0.11 4.17 7.20 -2.39 -0.02 4.15 16 29 H 0.11 4.06 6.17 -2.39 -0.01 4.04 16 30 H 0.42 12.31 7.39 -96.75 -0.71 11.60 16 31 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.06 1.56 4.37 -2.39 -0.01 1.55 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.25 7.71 -2.38 -0.02 1.24 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -76.66 326.24 -1.66 -78.32 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.28 Total: 29.09 kcal Atomic # 6 Polarization: -59.95 SS G_CDS: 2.72 Total: -57.23 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -0.26 Total: -90.59 kcal Atomic # 8 Polarization: -105.16 SS G_CDS: -5.99 Total: -111.16 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.88 Total: 41.55 kcal Atomic # 16 Polarization: 110.32 SS G_CDS: -0.30 Total: 110.01 kcal Total: -76.66 -1.66 -78.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579798685.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.772 kcal (2) G-P(sol) polarization free energy of solvation -76.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds