Wall clock time and date at job start Tue Mar 31 2020 03:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47196 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47209 * 179.97438 * 60.93069 * 3 2 1 5 5 C 1.52998 * 109.46822 * 47.18816 * 4 3 2 6 6 H 1.08991 * 109.47186 * 304.99524 * 5 4 3 7 7 C 1.53007 * 109.46810 * 184.99855 * 5 4 3 8 8 O 1.42896 * 109.46879 * 304.99970 * 7 5 4 9 9 N 1.46495 * 109.47481 * 64.99917 * 5 4 3 10 10 S 1.65595 * 120.00389 * 214.99778 * 9 5 4 11 11 O 1.42104 * 104.27487 * 308.93143 * 10 9 5 12 12 O 1.42095 * 104.27935 * 181.07064 * 10 9 5 13 13 C 1.81405 * 104.44914 * 64.99649 * 10 9 5 14 14 C 1.53002 * 109.47092 * 181.39206 * 13 10 9 15 15 C 1.50699 * 115.54895 * 294.70295 * 14 13 10 16 16 H 1.07998 * 119.99782 * 95.19608 * 15 14 13 17 17 C 1.37875 * 119.99985 * 274.91113 * 15 14 13 18 18 N 1.31513 * 120.00149 * 6.47673 * 17 15 14 19 19 Si 1.86800 * 119.99869 * 186.46954 * 17 15 14 20 20 H 1.48498 * 109.47197 * 60.00607 * 19 17 15 21 21 H 1.48504 * 109.47158 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47013 * 300.00053 * 19 17 15 23 23 C 1.53001 * 117.49704 * 80.37571 * 14 13 10 24 24 C 1.53000 * 117.49481 * 149.03384 * 14 13 10 25 25 H 1.08997 * 109.47398 * 71.88483 * 1 2 3 26 26 H 1.09001 * 109.47315 * 191.87892 * 1 2 3 27 27 H 1.09003 * 109.47621 * 311.88113 * 1 2 3 28 28 H 1.09004 * 109.47007 * 287.18514 * 4 3 2 29 29 H 1.09005 * 109.46687 * 167.18511 * 4 3 2 30 30 H 1.08999 * 109.46925 * 64.99632 * 7 5 4 31 31 H 1.08993 * 109.46969 * 184.99737 * 7 5 4 32 32 H 0.96703 * 114.00100 * 180.02562 * 8 7 5 33 33 H 0.97004 * 119.99743 * 34.99518 * 9 5 4 34 34 H 1.09000 * 109.46964 * 61.39183 * 13 10 9 35 35 H 1.08999 * 109.47235 * 301.39355 * 13 10 9 36 36 H 0.96993 * 120.00132 * 185.07016 * 18 17 15 37 37 H 1.09000 * 117.49788 * 215.00235 * 23 14 13 38 38 H 1.09000 * 117.49965 * 0.02562 * 23 14 13 39 39 H 1.08995 * 117.50089 * 359.97438 * 24 14 13 40 40 H 1.09007 * 117.49574 * 144.97208 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0009 -0.0006 5 6 4.6277 -0.9793 -1.0590 6 1 4.1935 -1.9632 -0.8821 7 6 6.1527 -1.0724 -0.9755 8 8 6.7167 0.2354 -1.0913 9 7 4.2395 -0.5063 -2.3900 10 16 3.8426 -1.5954 -3.5727 11 8 4.9281 -2.5124 -3.5832 12 8 3.5525 -0.7905 -4.7072 13 6 2.3361 -2.3994 -2.9605 14 6 1.8837 -3.4645 -3.9614 15 6 1.4450 -2.9472 -5.3071 16 1 2.1454 -2.9170 -6.1285 17 6 0.1477 -2.5179 -5.4911 18 7 -0.6708 -2.4394 -4.4647 19 14 -0.4471 -2.0475 -7.1983 20 1 -0.3244 -3.2171 -8.1049 21 1 -1.8682 -1.6224 -7.1276 22 1 0.3785 -0.9285 -7.7192 23 6 2.5959 -4.8181 -3.9227 24 6 1.1602 -4.6932 -3.4066 25 1 -0.3634 0.3195 -0.9767 26 1 -0.3634 -1.0057 0.2115 27 1 -0.3634 0.6861 0.7651 28 1 4.4818 -0.3027 0.9811 29 1 4.4809 1.0031 -0.2287 30 1 6.4382 -1.5078 -0.0179 31 1 6.5231 -1.7009 -1.7852 32 1 7.6826 0.2525 -1.0471 33 1 4.2149 0.4449 -2.5786 34 1 1.5492 -1.6545 -2.8420 35 1 2.5401 -2.8686 -1.9980 36 1 -1.6025 -2.2085 -4.6040 37 1 2.7472 -5.3345 -4.8707 38 1 3.3865 -4.9499 -3.1840 39 1 1.0069 -4.7430 -2.3287 40 1 0.3666 -5.1272 -4.0149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592111037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:08 Heat of formation + Delta-G solvation = -59.869069 kcal Electronic energy + Delta-G solvation = -23570.995366 eV Core-core repulsion = 20093.939482 eV Total energy + Delta-G solvation = -3477.055883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -38.09097 -36.74709 -36.16489 -35.39053 -35.04795 -33.56235 -32.01646 -30.52562 -28.20187 -28.13220 -25.67032 -25.43230 -21.42978 -21.20537 -19.79643 -18.72081 -17.70834 -16.88462 -16.62169 -16.39739 -15.63120 -15.07509 -14.78893 -14.52043 -14.40619 -14.07443 -13.82650 -13.67267 -13.36239 -13.18768 -13.05564 -12.89444 -12.12191 -11.86623 -11.80111 -11.64412 -11.27748 -11.19525 -11.09016 -10.99089 -10.88046 -10.58208 -10.45785 -10.13357 -10.08221 -9.76641 -9.56509 -9.50110 -9.15032 -8.93177 -8.52172 -8.08750 -6.12246 -4.22020 1.12449 2.87727 2.93846 3.34214 3.36216 3.43770 3.45359 4.19221 4.34858 4.40162 4.59800 4.90082 4.93244 5.11085 5.16560 5.21618 5.23632 5.32837 5.46482 5.70095 5.71135 5.77051 5.80973 5.84738 5.94993 6.02124 6.15623 6.22032 6.30232 6.41203 6.62781 6.71113 6.99209 7.25650 7.37220 7.39161 7.57386 7.82582 7.86971 8.21720 8.83484 9.49176 10.96058 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.006012 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.370748 B = 4656.086253 C = 5374.774596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.175 4.175 3 C -0.202 4.202 4 C -0.002 4.002 5 C 0.164 3.836 6 H 0.095 0.905 7 C 0.056 3.944 8 O -0.567 6.567 9 N -1.118 6.118 10 S 2.605 3.395 11 O -0.978 6.978 12 O -0.948 6.948 13 C -0.550 4.550 14 C 0.044 3.956 15 C -0.512 4.512 16 H 0.068 0.932 17 C 0.082 3.918 18 N -0.874 5.874 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.269 1.269 23 C -0.211 4.211 24 C -0.139 4.139 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.377 0.623 33 H 0.415 0.585 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.262 0.738 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 3.482 11.990 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.175 4.175 3 C -0.202 4.202 4 C -0.040 4.040 5 C 0.055 3.945 6 H 0.113 0.887 7 C -0.023 4.023 8 O -0.372 6.372 9 N -0.874 5.874 10 S 2.702 3.298 11 O -0.968 6.968 12 O -0.939 6.939 13 C -0.684 4.684 14 C 0.042 3.958 15 C -0.549 4.549 16 H 0.086 0.914 17 C -0.123 4.123 18 N -0.510 5.510 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.248 4.248 24 C -0.178 4.178 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.223 0.777 33 H 0.248 0.752 34 H 0.153 0.847 35 H 0.112 0.888 36 H 0.072 0.928 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.598 3.463 11.241 14.003 hybrid contribution -0.479 0.357 -0.250 0.648 sum 7.119 3.820 10.991 13.641 Atomic orbital electron populations 1.18895 0.84753 1.03051 1.03263 1.22437 0.93894 1.00533 1.00605 1.22104 0.93410 1.02433 1.02226 1.18825 0.84653 1.01548 0.98965 1.20731 0.92648 0.97957 0.83143 0.88731 1.22832 0.93712 0.85014 1.00781 1.86449 1.25118 1.28664 1.96998 1.55929 1.84976 1.21759 1.24721 1.05189 0.76893 0.74206 0.73518 1.93480 1.51581 1.65388 1.86324 1.93556 1.86059 1.67257 1.46994 1.29976 1.18954 1.12098 1.07328 1.18282 0.99689 0.83876 0.93972 1.20500 0.97150 1.43339 0.93891 0.91426 1.24916 0.96779 0.93703 0.96917 1.70000 1.04859 1.46541 1.29558 0.86694 0.77642 0.79530 0.84627 1.19970 1.21144 1.19435 1.23219 0.95409 1.04157 1.02045 1.22528 0.93454 1.03965 0.97903 0.89614 0.89992 0.90699 0.88983 0.88351 0.92851 0.91270 0.77664 0.75171 0.84721 0.88792 0.92802 0.89518 0.90727 0.91610 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.56 10.32 34.37 0.35 -0.20 16 2 C -0.17 -2.62 14.13 -37.13 -0.52 -3.15 16 3 C -0.20 -2.91 13.06 -37.12 -0.48 -3.39 16 4 C 0.00 -0.02 5.03 -29.52 -0.15 -0.17 16 5 C 0.16 2.15 2.44 -67.93 -0.17 1.98 16 6 H 0.09 1.19 7.12 -51.93 -0.37 0.82 16 7 C 0.06 0.63 6.88 37.16 0.26 0.89 16 8 O -0.57 -5.99 12.83 -35.23 -0.45 -6.44 16 9 N -1.12 -17.94 5.01 -4.89 -0.02 -17.97 16 10 S 2.60 54.05 5.18 -107.50 -0.56 53.50 16 11 O -0.98 -21.18 17.05 -57.54 -0.98 -22.16 16 12 O -0.95 -23.53 17.49 -57.54 -1.01 -24.54 16 13 C -0.55 -11.80 5.83 37.16 0.22 -11.59 16 14 C 0.04 1.08 1.33 -155.66 -0.21 0.87 16 15 C -0.51 -14.14 7.98 -34.44 -0.27 -14.42 16 16 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 17 C 0.08 2.24 5.39 -17.82 -0.10 2.14 16 18 N -0.87 -23.96 12.93 55.43 0.72 -23.25 16 19 Si 0.89 21.55 29.55 -169.99 -5.02 16.53 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 C -0.21 -4.63 9.96 -26.69 -0.27 -4.90 16 24 C -0.14 -3.17 9.44 -26.69 -0.25 -3.42 16 25 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.12 7.73 -51.93 -0.40 0.72 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.90 7.36 -51.93 -0.38 0.52 16 32 H 0.38 2.33 9.12 45.56 0.42 2.74 16 33 H 0.41 6.29 8.80 -34.47 -0.30 5.99 16 34 H 0.13 3.07 8.14 -51.92 -0.42 2.65 16 35 H 0.09 1.72 7.35 -51.92 -0.38 1.34 16 36 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 37 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 38 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -34.30 358.17 -8.72 -43.02 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -5.20 Total: 11.27 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: -1.59 Total: -35.35 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.69 Total: -41.21 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -2.44 Total: -53.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 54.05 SS G_CDS: -0.56 Total: 53.50 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.30 -8.72 -43.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592111037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.849 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds