Wall clock time and date at job start Tue Mar 31 2020 03:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47196 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47209 * 179.97438 * 60.93069 * 3 2 1 5 5 C 1.52998 * 109.46822 * 47.18816 * 4 3 2 6 6 H 1.08991 * 109.47186 * 304.99524 * 5 4 3 7 7 C 1.53007 * 109.46810 * 184.99855 * 5 4 3 8 8 O 1.42896 * 109.46879 * 304.99970 * 7 5 4 9 9 N 1.46495 * 109.47481 * 64.99917 * 5 4 3 10 10 S 1.65595 * 120.00389 * 214.99778 * 9 5 4 11 11 O 1.42104 * 104.27487 * 308.93143 * 10 9 5 12 12 O 1.42095 * 104.27935 * 181.07064 * 10 9 5 13 13 C 1.81405 * 104.44914 * 64.99649 * 10 9 5 14 14 C 1.53002 * 109.47092 * 181.39206 * 13 10 9 15 15 C 1.50699 * 115.54895 * 294.70295 * 14 13 10 16 16 H 1.07998 * 119.99782 * 95.19608 * 15 14 13 17 17 C 1.37875 * 119.99985 * 274.91113 * 15 14 13 18 18 N 1.31513 * 120.00149 * 6.47673 * 17 15 14 19 19 Si 1.86800 * 119.99869 * 186.46954 * 17 15 14 20 20 H 1.48498 * 109.47197 * 60.00607 * 19 17 15 21 21 H 1.48504 * 109.47158 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47013 * 300.00053 * 19 17 15 23 23 C 1.53001 * 117.49704 * 80.37571 * 14 13 10 24 24 C 1.53000 * 117.49481 * 149.03384 * 14 13 10 25 25 H 1.08997 * 109.47398 * 71.88483 * 1 2 3 26 26 H 1.09001 * 109.47315 * 191.87892 * 1 2 3 27 27 H 1.09003 * 109.47621 * 311.88113 * 1 2 3 28 28 H 1.09004 * 109.47007 * 287.18514 * 4 3 2 29 29 H 1.09005 * 109.46687 * 167.18511 * 4 3 2 30 30 H 1.08999 * 109.46925 * 64.99632 * 7 5 4 31 31 H 1.08993 * 109.46969 * 184.99737 * 7 5 4 32 32 H 0.96703 * 114.00100 * 180.02562 * 8 7 5 33 33 H 0.97004 * 119.99743 * 34.99518 * 9 5 4 34 34 H 1.09000 * 109.46964 * 61.39183 * 13 10 9 35 35 H 1.08999 * 109.47235 * 301.39355 * 13 10 9 36 36 H 0.96993 * 120.00132 * 185.07016 * 18 17 15 37 37 H 1.09000 * 117.49788 * 215.00235 * 23 14 13 38 38 H 1.09000 * 117.49965 * 0.02562 * 23 14 13 39 39 H 1.08995 * 117.50089 * 359.97438 * 24 14 13 40 40 H 1.09007 * 117.49574 * 144.97208 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1180 0.0009 -0.0006 5 6 4.6277 -0.9793 -1.0590 6 1 4.1935 -1.9632 -0.8821 7 6 6.1527 -1.0724 -0.9755 8 8 6.7167 0.2354 -1.0913 9 7 4.2395 -0.5063 -2.3900 10 16 3.8426 -1.5954 -3.5727 11 8 4.9281 -2.5124 -3.5832 12 8 3.5525 -0.7905 -4.7072 13 6 2.3361 -2.3994 -2.9605 14 6 1.8837 -3.4645 -3.9614 15 6 1.4450 -2.9472 -5.3071 16 1 2.1454 -2.9170 -6.1285 17 6 0.1477 -2.5179 -5.4911 18 7 -0.6708 -2.4394 -4.4647 19 14 -0.4471 -2.0475 -7.1983 20 1 -0.3244 -3.2171 -8.1049 21 1 -1.8682 -1.6224 -7.1276 22 1 0.3785 -0.9285 -7.7192 23 6 2.5959 -4.8181 -3.9227 24 6 1.1602 -4.6932 -3.4066 25 1 -0.3634 0.3195 -0.9767 26 1 -0.3634 -1.0057 0.2115 27 1 -0.3634 0.6861 0.7651 28 1 4.4818 -0.3027 0.9811 29 1 4.4809 1.0031 -0.2287 30 1 6.4382 -1.5078 -0.0179 31 1 6.5231 -1.7009 -1.7852 32 1 7.6826 0.2525 -1.0471 33 1 4.2149 0.4449 -2.5786 34 1 1.5492 -1.6545 -2.8420 35 1 2.5401 -2.8686 -1.9980 36 1 -1.6025 -2.2085 -4.6040 37 1 2.7472 -5.3345 -4.8707 38 1 3.3865 -4.9499 -3.1840 39 1 1.0069 -4.7430 -2.3287 40 1 0.3666 -5.1272 -4.0149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592111037.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:07 Heat of formation + Delta-G solvation = -86.152207 kcal Electronic energy + Delta-G solvation = -23572.135088 eV Core-core repulsion = 20093.939482 eV Total energy + Delta-G solvation = -3478.195606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.07013 -38.57469 -37.88633 -36.79882 -36.31340 -34.65975 -34.07786 -31.62711 -29.87836 -29.17910 -27.48865 -26.60356 -23.00537 -22.43754 -21.58049 -20.30523 -18.90735 -18.35488 -17.95026 -17.88900 -16.89900 -16.77087 -16.59510 -16.02917 -15.60731 -15.47204 -15.01572 -14.98983 -14.69747 -14.37148 -14.11038 -13.90762 -13.77301 -13.68379 -13.17925 -13.08686 -12.94276 -12.90598 -12.85584 -12.60105 -12.49061 -12.41738 -12.21978 -11.92114 -11.58709 -11.00599 -10.86555 -10.66360 -10.54769 -10.53060 -10.33805 -9.87973 -8.19542 -6.33405 -0.51027 1.37335 1.40761 1.47180 1.78985 1.84561 2.00522 2.39875 2.94153 3.07975 3.33984 3.37041 3.41958 3.45183 3.88243 4.02542 4.11411 4.20677 4.37889 4.43477 4.49956 4.60228 4.65104 4.79766 4.81202 4.81792 4.83767 4.92520 4.96600 4.99031 5.15832 5.20484 5.27932 5.46373 5.58703 5.71806 6.11862 6.22105 6.72434 6.79325 7.00986 7.38682 8.87985 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.006012 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.370748 B = 4656.086253 C = 5374.774596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.209 4.209 3 C -0.206 4.206 4 C 0.003 3.997 5 C 0.149 3.851 6 H 0.101 0.899 7 C 0.060 3.940 8 O -0.580 6.580 9 N -1.107 6.107 10 S 2.622 3.378 11 O -0.988 6.988 12 O -0.998 6.998 13 C -0.546 4.546 14 C 0.011 3.989 15 C -0.532 4.532 16 H 0.047 0.953 17 C 0.043 3.957 18 N -0.889 5.889 19 Si 0.931 3.069 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.281 1.281 23 C -0.197 4.197 24 C -0.135 4.135 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.048 0.952 32 H 0.396 0.604 33 H 0.419 0.581 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.897 3.392 13.889 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.209 4.209 3 C -0.206 4.206 4 C -0.034 4.034 5 C 0.042 3.958 6 H 0.119 0.881 7 C -0.019 4.019 8 O -0.388 6.388 9 N -0.867 5.867 10 S 2.719 3.281 11 O -0.978 6.978 12 O -0.988 6.988 13 C -0.678 4.678 14 C 0.008 3.992 15 C -0.570 4.570 16 H 0.065 0.935 17 C -0.160 4.160 18 N -0.525 5.525 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.206 1.206 23 C -0.234 4.234 24 C -0.174 4.174 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.118 0.882 28 H 0.145 0.855 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.246 0.754 33 H 0.254 0.746 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.612 3.361 13.141 16.067 hybrid contribution -0.713 0.409 -0.779 1.133 sum 7.899 3.769 12.361 15.146 Atomic orbital electron populations 1.18972 0.83984 1.03837 1.03333 1.23088 0.95003 1.01306 1.01504 1.22802 0.94390 1.01879 1.01559 1.18958 0.82890 1.01503 1.00094 1.21158 0.94484 0.98652 0.81528 0.88093 1.22736 0.91991 0.85170 1.02046 1.86401 1.27086 1.28256 1.97092 1.55535 1.84559 1.21150 1.25432 1.04402 0.76361 0.74014 0.73312 1.93459 1.51541 1.66062 1.86698 1.93486 1.86623 1.68478 1.50206 1.29830 1.18712 1.11186 1.08108 1.18389 1.01828 0.85317 0.93624 1.20683 0.97194 1.43922 0.95165 0.93513 1.25475 0.97033 0.93905 0.99602 1.70040 1.04995 1.46966 1.30458 0.86033 0.77629 0.79034 0.81694 1.19160 1.19715 1.20619 1.23276 0.95633 1.01962 1.02551 1.22482 0.93415 1.02789 0.98754 0.91013 0.89782 0.88162 0.85499 0.87874 0.88961 0.93354 0.75404 0.74576 0.86477 0.85627 0.92586 0.89831 0.88119 0.89487 0.91445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.13 10.32 70.18 0.72 -0.41 16 2 C -0.21 -6.08 14.13 31.12 0.44 -5.64 16 3 C -0.21 -5.56 13.06 31.13 0.41 -5.16 16 4 C 0.00 0.06 5.03 28.79 0.14 0.21 16 5 C 0.15 3.50 2.44 44.99 0.11 3.61 16 6 H 0.10 2.24 7.12 -2.39 -0.02 2.22 16 7 C 0.06 1.16 6.88 71.98 0.50 1.65 16 8 O -0.58 -10.50 12.83 -148.98 -1.91 -12.41 16 9 N -1.11 -34.24 5.01 -169.40 -0.85 -35.09 16 10 S 2.62 108.12 5.18 -56.49 -0.29 107.83 16 11 O -0.99 -41.87 17.05 -127.65 -2.18 -44.04 16 12 O -1.00 -50.66 17.49 -127.65 -2.23 -52.89 16 13 C -0.55 -23.08 5.83 71.98 0.42 -22.66 16 14 C 0.01 0.52 1.33 -52.93 -0.07 0.45 16 15 C -0.53 -29.97 7.98 25.60 0.20 -29.77 16 16 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 17 C 0.04 2.38 5.39 84.65 0.46 2.83 16 18 N -0.89 -49.09 12.93 21.45 0.28 -48.82 16 19 Si 0.93 44.59 29.55 68.60 2.03 46.62 16 20 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 23 C -0.20 -8.40 9.96 30.62 0.30 -8.10 16 24 C -0.14 -6.04 9.44 30.62 0.29 -5.75 16 25 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 2.05 7.73 -2.38 -0.02 2.03 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.15 7.36 -2.39 -0.02 1.13 16 32 H 0.40 3.68 9.12 -74.06 -0.68 3.01 16 33 H 0.42 12.40 8.80 -96.74 -0.85 11.55 16 34 H 0.12 5.39 8.14 -2.39 -0.02 5.37 16 35 H 0.13 4.35 7.35 -2.39 -0.02 4.33 16 36 H 0.26 13.92 8.32 -92.71 -0.77 13.14 16 37 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 40 H 0.07 3.23 8.14 -2.38 -0.02 3.21 16 Total: -1.00 -74.24 358.17 -1.70 -75.94 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: -0.46 Total: 31.59 kcal Atomic # 6 Polarization: -72.65 SS G_CDS: 3.92 Total: -68.72 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -0.57 Total: -83.90 kcal Atomic # 8 Polarization: -103.03 SS G_CDS: -6.32 Total: -109.35 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 108.12 SS G_CDS: -0.29 Total: 107.83 kcal Total: -74.24 -1.70 -75.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592111037.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.215 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds