Wall clock time and date at job start Tue Mar 31 2020 04:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00213 * 2 1 4 4 H 1.48500 * 109.47210 * 270.00098 * 3 2 1 5 5 H 1.48505 * 109.46892 * 30.00087 * 3 2 1 6 6 H 1.48498 * 109.47358 * 149.99671 * 3 2 1 7 7 C 1.37881 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99989 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99663 * 0.27523 * 7 2 1 10 10 O 1.42906 * 110.88367 * 59.02397 * 9 7 2 11 11 C 1.55153 * 111.00301 * 182.90327 * 9 7 2 12 12 C 1.54322 * 102.93956 * 153.57536 * 11 9 7 13 13 N 1.47014 * 107.27426 * 337.80950 * 12 11 9 14 14 C 1.34778 * 125.64841 * 178.90684 * 13 12 11 15 15 O 1.21597 * 120.00060 * 174.80462 * 14 13 12 16 16 C 1.47571 * 120.00159 * 354.80601 * 14 13 12 17 17 C 1.41755 * 120.01428 * 7.61616 * 16 14 13 18 18 C 1.35628 * 119.54156 * 179.73607 * 17 16 14 19 19 C 1.41169 * 119.50357 * 0.51869 * 18 17 16 20 20 N 1.32422 * 132.11101 * 179.75454 * 19 18 17 21 21 C 1.33596 * 109.22069 * 179.97438 * 20 19 18 22 22 C 1.34993 * 108.66146 * 0.02562 * 21 20 19 23 23 N 1.37013 * 107.14641 * 359.97438 * 22 21 20 24 24 C 1.35917 * 132.42260 * 180.02562 * 23 22 21 25 25 C 1.47469 * 108.72137 * 358.97324 * 13 12 11 26 26 H 0.97001 * 120.00031 * 0.02562 * 1 2 3 27 27 H 0.96696 * 114.00078 * 300.69661 * 10 9 7 28 28 H 1.08993 * 110.72218 * 271.94453 * 11 9 7 29 29 H 1.08999 * 110.72086 * 35.03699 * 11 9 7 30 30 H 1.09003 * 109.87944 * 97.22893 * 12 11 9 31 31 H 1.08998 * 109.88145 * 218.38876 * 12 11 9 32 32 H 1.08003 * 120.22371 * 359.97438 * 17 16 14 33 33 H 1.08006 * 120.24304 * 180.29484 * 18 17 16 34 34 H 1.08003 * 125.67073 * 180.02562 * 21 20 19 35 35 H 1.08005 * 126.43166 * 179.97438 * 22 21 20 36 36 H 1.08001 * 119.75741 * 0.02562 * 24 23 22 37 37 H 1.08998 * 110.34844 * 265.25181 * 25 13 12 38 38 H 1.09005 * 110.40616 * 142.91735 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0074 10 8 0.4059 -2.5934 -1.1559 11 6 2.2254 -3.7043 0.0666 12 6 1.3641 -4.8054 0.7202 13 7 0.2767 -4.1349 1.4477 14 6 -0.7044 -4.7510 2.1364 15 8 -1.5002 -4.0943 2.7800 16 6 -0.8129 -6.2224 2.1096 17 6 0.2033 -6.9973 1.4961 18 6 0.0965 -8.3493 1.4817 19 6 -1.0308 -8.9639 2.0684 20 7 -1.3868 -10.2335 2.1907 21 6 -2.5561 -10.3024 2.8333 22 6 -2.9605 -9.0490 3.1298 23 7 -2.0042 -8.1923 2.6516 24 6 -1.8946 -6.8377 2.6707 25 6 0.4358 -2.6765 1.2978 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2527 -1.8882 -1.2186 28 1 2.5434 -4.0050 -0.9316 29 1 3.0878 -3.4653 0.6888 30 1 0.9491 -5.4569 -0.0489 31 1 1.9706 -5.3874 1.4142 32 1 1.0585 -6.5145 1.0467 33 1 0.8665 -8.9509 1.0215 34 1 -3.0893 -11.2099 3.0752 35 1 -3.8677 -8.7733 3.6470 36 1 -2.6686 -6.2437 3.1339 37 1 0.9836 -2.2658 2.1460 38 1 -0.5379 -2.1954 1.2052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592838522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:46 Heat of formation + Delta-G solvation = 17.042239 kcal Electronic energy + Delta-G solvation = -24184.095032 eV Core-core repulsion = 20607.223073 eV Total energy + Delta-G solvation = -3576.871959 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -43.88806 -41.36017 -39.12894 -37.96928 -36.27026 -34.73471 -34.17967 -32.24321 -31.35243 -30.15878 -29.40385 -27.33587 -25.39241 -24.69190 -23.41603 -22.83078 -21.48632 -20.85879 -19.39465 -18.99915 -18.37499 -17.22125 -17.13590 -16.97916 -16.88344 -16.57043 -16.13256 -15.62440 -15.39073 -14.95850 -14.92133 -14.71086 -14.59382 -14.32671 -13.68408 -13.48458 -13.27468 -12.96777 -12.83260 -12.80887 -12.33958 -12.24288 -12.22404 -12.01255 -11.95236 -11.26265 -11.18775 -11.13738 -10.63386 -10.31898 -10.01610 -9.55444 -8.92816 -8.25049 -6.41224 -0.56541 0.01705 1.31902 1.43267 1.45984 1.47924 1.54633 2.00503 2.07325 2.39482 2.52714 3.01806 3.18285 3.31793 3.49942 3.63196 3.75740 3.88853 4.08196 4.12954 4.28835 4.38506 4.43120 4.46257 4.54311 4.72445 4.83900 4.89808 5.00385 5.04205 5.09157 5.26126 5.33746 5.40382 5.47839 5.60107 5.77192 5.87449 6.06381 6.52182 6.67787 6.75709 6.99027 7.30293 7.37354 8.80280 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.037796 B = 0.003411 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.637161 B = 8205.688541 C = 8635.975987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.588 6.588 11 C -0.115 4.115 12 C 0.089 3.911 13 N -0.601 5.601 14 C 0.570 3.430 15 O -0.590 6.590 16 C -0.155 4.155 17 C -0.114 4.114 18 C -0.081 4.081 19 C 0.205 3.795 20 N -0.521 5.521 21 C 0.024 3.976 22 C -0.097 4.097 23 N -0.372 5.372 24 C 0.128 3.872 25 C 0.108 3.892 26 H 0.269 0.731 27 H 0.375 0.625 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.197 0.803 33 H 0.183 0.817 34 H 0.214 0.786 35 H 0.217 0.783 36 H 0.182 0.818 37 H 0.049 0.951 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 -16.003 4.040 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.089 0.911 9 C 0.191 3.809 10 O -0.396 6.396 11 C -0.153 4.153 12 C -0.032 4.032 13 N -0.331 5.331 14 C 0.360 3.640 15 O -0.473 6.473 16 C -0.162 4.162 17 C -0.137 4.137 18 C -0.101 4.101 19 C -0.038 4.038 20 N -0.242 5.242 21 C -0.125 4.125 22 C -0.225 4.225 23 N -0.045 5.045 24 C 0.002 3.998 25 C -0.014 4.014 26 H 0.078 0.922 27 H 0.224 0.776 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.213 0.787 33 H 0.200 0.800 34 H 0.231 0.769 35 H 0.234 0.766 36 H 0.199 0.801 37 H 0.068 0.932 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.414 -16.832 4.051 17.318 hybrid contribution -0.989 2.582 0.544 2.818 sum -1.403 -14.251 4.595 15.039 Atomic orbital electron populations 1.69756 1.07156 1.28405 1.50341 1.25805 0.95713 1.02788 0.93159 0.85486 0.78769 0.78779 0.78185 1.20171 1.21403 1.18871 1.21836 0.94093 0.91161 1.52113 0.91053 1.19876 0.86749 0.93407 0.80908 1.86079 1.51459 1.54695 1.47383 1.22722 0.97363 0.93276 1.01935 1.22826 0.88126 0.96019 0.96211 1.48566 1.26504 1.08788 1.49248 1.17836 0.80166 0.87047 0.78934 1.90746 1.43944 1.67772 1.44869 1.19207 0.98029 0.92672 1.06270 1.22733 1.00135 0.93403 0.97380 1.20557 0.95521 0.94138 0.99877 1.21681 0.93527 0.87075 1.01522 1.70745 1.15760 1.15498 1.22154 1.23172 0.92895 0.98188 0.98279 1.23464 0.98499 0.89166 1.11405 1.42984 1.18303 1.05728 1.37452 1.21688 0.99234 0.81554 0.97341 1.22925 1.00437 0.77920 1.00148 0.92153 0.77562 0.89093 0.88817 0.88899 0.87139 0.78675 0.80012 0.76906 0.76636 0.80108 0.93239 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.54 10.69 21.45 0.23 -48.31 16 2 C 0.03 1.32 5.29 84.66 0.45 1.77 16 3 Si 0.96 40.54 29.54 68.60 2.03 42.56 16 4 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.55 -27.40 8.25 25.60 0.21 -27.19 16 8 H 0.07 3.39 7.78 -2.91 -0.02 3.37 16 9 C 0.23 10.47 0.88 -10.15 -0.01 10.46 16 10 O -0.59 -28.76 13.17 -148.98 -1.96 -30.72 16 11 C -0.12 -3.87 6.13 31.78 0.19 -3.68 16 12 C 0.09 2.51 4.86 86.73 0.42 2.93 16 13 N -0.60 -22.60 3.33 -826.16 -2.75 -25.35 16 14 C 0.57 21.43 7.79 86.71 0.68 22.10 16 15 O -0.59 -26.57 16.60 -4.02 -0.07 -26.63 16 16 C -0.16 -4.49 5.83 -20.35 -0.12 -4.60 16 17 C -0.11 -2.59 8.55 22.53 0.19 -2.40 16 18 C -0.08 -1.74 10.09 22.39 0.23 -1.52 16 19 C 0.21 5.29 7.81 134.16 1.05 6.34 16 20 N -0.52 -13.57 11.31 -194.15 -2.20 -15.76 16 21 C 0.02 0.46 11.82 83.68 0.99 1.45 16 22 C -0.10 -1.83 11.75 83.14 0.98 -0.85 16 23 N -0.37 -9.10 2.93 -351.04 -1.03 -10.13 16 24 C 0.13 3.36 10.49 83.66 0.88 4.24 16 25 C 0.11 5.00 5.50 86.84 0.48 5.48 16 26 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 27 H 0.37 19.57 7.24 -74.06 -0.54 19.03 16 28 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.09 2.89 8.02 -2.39 -0.02 2.87 16 30 H 0.09 2.32 6.63 -2.39 -0.02 2.31 16 31 H 0.11 2.25 6.80 -2.39 -0.02 2.24 16 32 H 0.20 3.67 2.81 -7.05 -0.02 3.65 16 33 H 0.18 2.79 8.06 -2.91 -0.02 2.77 16 34 H 0.21 2.45 8.06 -2.91 -0.02 2.43 16 35 H 0.22 2.39 8.06 -2.91 -0.02 2.37 16 36 H 0.18 4.48 7.58 -2.91 -0.02 4.46 16 37 H 0.05 2.38 8.03 -2.39 -0.02 2.36 16 38 H 0.05 2.47 7.54 -2.38 -0.02 2.45 16 Total: -1.00 -67.47 316.97 1.43 -66.04 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.57 Total: 33.78 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 6.61 Total: 14.53 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -5.75 Total: -99.56 kcal Atomic # 8 Polarization: -55.33 SS G_CDS: -2.03 Total: -57.36 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -67.47 1.43 -66.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592838522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.083 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds