Wall clock time and date at job start Tue Mar 31 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99473 * 2 1 4 4 H 1.48504 * 109.47174 * 239.99674 * 3 2 1 5 5 H 1.48502 * 109.47511 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46943 * 119.99994 * 3 2 1 7 7 C 1.37868 * 120.00400 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00493 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00137 * 359.97438 * 7 2 1 10 10 O 1.42909 * 110.91462 * 297.55721 * 9 7 2 11 11 C 1.55440 * 111.11990 * 173.55700 * 9 7 2 12 12 C 1.54324 * 102.97102 * 206.46406 * 11 9 7 13 13 N 1.47020 * 107.26815 * 22.19664 * 12 11 9 14 14 C 1.34781 * 125.64777 * 181.07917 * 13 12 11 15 15 O 1.21599 * 119.99837 * 174.41169 * 14 13 12 16 16 C 1.47519 * 120.00005 * 354.41652 * 14 13 12 17 17 C 1.46503 * 120.16650 * 6.77881 * 16 14 13 18 18 C 1.35529 * 119.04696 * 179.70860 * 17 16 14 19 19 C 1.41232 * 119.42705 * 0.56576 * 18 17 16 20 20 C 1.37904 * 132.97429 * 179.70435 * 19 18 17 21 21 N 1.33451 * 107.66086 * 179.97438 * 20 19 18 22 22 C 1.30742 * 109.93500 * 359.97438 * 21 20 19 23 23 N 1.35920 * 109.20926 * 359.97438 * 22 21 20 24 24 C 1.36326 * 120.16990 * 187.05337 * 16 14 13 25 25 C 1.47419 * 108.70549 * 1.05538 * 13 12 11 26 26 H 0.97003 * 120.00692 * 359.97438 * 1 2 3 27 27 H 0.96694 * 114.00198 * 62.44459 * 10 9 7 28 28 H 1.09002 * 110.70481 * 88.09322 * 11 9 7 29 29 H 1.08998 * 110.71009 * 324.83914 * 11 9 7 30 30 H 1.09000 * 109.88607 * 262.77901 * 12 11 9 31 31 H 1.08997 * 110.00989 * 141.68042 * 12 11 9 32 32 H 1.08004 * 120.47466 * 0.02562 * 17 16 14 33 33 H 1.08003 * 120.29102 * 180.28945 * 18 17 16 34 34 H 1.08000 * 126.17276 * 359.97438 * 20 19 18 35 35 H 1.08004 * 125.39782 * 180.02562 * 22 21 20 36 36 H 1.08002 * 119.74453 * 0.02562 * 24 16 14 37 37 H 1.09005 * 110.36856 * 94.71288 * 25 13 12 38 38 H 1.09001 * 110.37115 * 216.92530 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 0.4617 -2.6325 1.1832 11 6 2.2190 -3.7045 -0.1639 12 6 1.3240 -4.7820 -0.8116 13 7 0.2039 -4.0860 -1.4616 14 6 -0.8112 -4.6774 -2.1222 15 8 -1.7394 -4.0089 -2.5348 16 6 -0.7963 -6.1356 -2.3446 17 6 0.2401 -6.9645 -1.7239 18 6 0.2288 -8.3026 -1.9386 19 6 -0.7710 -8.8647 -2.7627 20 6 -1.0402 -10.1554 -3.1668 21 7 -2.1187 -10.1173 -3.9519 22 6 -2.5437 -8.8861 -4.0659 23 7 -1.7374 -8.0658 -3.3419 24 6 -1.7435 -6.7181 -3.1332 25 6 0.3746 -2.6343 -1.2706 26 1 -0.4851 0.8400 0.0004 27 1 -0.2246 -1.9577 1.2764 28 1 2.5847 -4.0393 0.8068 29 1 3.0488 -3.4461 -0.8216 30 1 0.9455 -5.4589 -0.0457 31 1 1.8926 -5.3426 -1.5534 32 1 0.9992 -6.5162 -1.0999 33 1 0.9804 -8.9331 -1.4871 34 1 -0.4794 -11.0380 -2.8966 35 1 -3.4003 -8.5710 -4.6433 36 1 -2.5053 -6.1078 -3.5954 37 1 0.8818 -2.1956 -2.1300 38 1 -0.5925 -2.1555 -1.1168 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592851265.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:02 Heat of formation + Delta-G solvation = 33.041784 kcal Electronic energy + Delta-G solvation = -24149.143284 eV Core-core repulsion = 20572.965117 eV Total energy + Delta-G solvation = -3576.178167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.83489 -39.85958 -37.57142 -36.73172 -34.62528 -33.44096 -32.31455 -31.22117 -30.17181 -28.52114 -27.89326 -25.73240 -24.01504 -23.43179 -22.21577 -21.94310 -19.83360 -19.39897 -18.21070 -17.37234 -17.18625 -16.01248 -15.78273 -15.74565 -15.19486 -15.14589 -14.78096 -14.56481 -14.40087 -13.66776 -13.41199 -13.34357 -13.15419 -12.92658 -12.20930 -11.95145 -11.91585 -11.61608 -11.30956 -11.06980 -10.95952 -10.77590 -10.66572 -10.56556 -10.41747 -10.28998 -9.69123 -9.44305 -9.37104 -8.77296 -8.49677 -8.01642 -7.66308 -6.35315 -4.45683 0.55770 0.91724 2.34708 2.70053 3.02575 3.16975 3.23687 3.24750 3.43968 3.60956 4.20015 4.30639 4.42727 4.49925 4.67280 4.72201 4.81789 4.91265 5.19245 5.26873 5.35461 5.43177 5.58318 5.68300 5.78880 5.81726 6.00392 6.06492 6.30694 6.35596 6.42272 6.59068 6.71192 6.79275 6.95387 7.12966 7.23900 7.66000 7.67111 7.91918 7.98811 8.45750 8.58337 9.20837 9.29626 10.71669 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.037248 B = 0.003395 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.531340 B = 8246.341869 C = 8693.659312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.250 3.750 10 O -0.582 6.582 11 C -0.121 4.121 12 C 0.092 3.908 13 N -0.597 5.597 14 C 0.573 3.427 15 O -0.547 6.547 16 C -0.138 4.138 17 C -0.133 4.133 18 C -0.087 4.087 19 C 0.008 3.992 20 C -0.027 4.027 21 N -0.454 5.454 22 C 0.145 3.855 23 N -0.374 5.374 24 C 0.116 3.884 25 C 0.093 3.907 26 H 0.271 0.729 27 H 0.382 0.618 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.177 0.823 33 H 0.150 0.850 34 H 0.180 0.820 35 H 0.213 0.787 36 H 0.179 0.821 37 H 0.064 0.936 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.766 -13.834 -4.105 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.209 3.791 10 O -0.391 6.391 11 C -0.159 4.159 12 C -0.030 4.030 13 N -0.328 5.328 14 C 0.360 3.640 15 O -0.427 6.427 16 C -0.144 4.144 17 C -0.152 4.152 18 C -0.106 4.106 19 C -0.100 4.100 20 C -0.180 4.180 21 N -0.168 5.168 22 C -0.130 4.130 23 N -0.046 5.046 24 C -0.007 4.007 25 C -0.027 4.027 26 H 0.081 0.919 27 H 0.232 0.768 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.194 0.806 33 H 0.168 0.832 34 H 0.197 0.803 35 H 0.230 0.770 36 H 0.196 0.804 37 H 0.083 0.917 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.031 -14.551 -4.728 15.300 hybrid contribution 0.335 2.076 0.169 2.110 sum 0.304 -12.475 -4.559 13.285 Atomic orbital electron populations 1.69696 1.06000 1.28153 1.49206 1.25076 0.95048 0.99808 0.93243 0.86451 0.79529 0.82027 0.78845 1.19993 1.21069 1.19961 1.21398 0.93648 0.89953 1.52816 0.91480 1.19668 0.86543 0.91636 0.81257 1.86104 1.51550 1.57203 1.44238 1.22755 0.97616 0.95128 1.00404 1.22544 0.88425 0.96232 0.95850 1.48566 1.22453 1.10279 1.51454 1.17287 0.82063 0.85474 0.79130 1.90788 1.34259 1.65094 1.52516 1.20609 0.97418 0.94915 1.01499 1.23705 0.98645 0.93324 0.99533 1.20492 0.97259 0.95085 0.97799 1.19851 0.94759 0.92305 1.03127 1.22527 0.98221 0.94765 1.02500 1.69930 1.11253 1.18917 1.16660 1.25157 1.00509 0.84351 1.02938 1.42970 1.21962 1.06435 1.33275 1.21690 0.99642 0.81402 0.97927 1.23387 1.03144 0.75939 1.00268 0.91852 0.76797 0.90392 0.90099 0.91009 0.91494 0.80617 0.83216 0.80256 0.77025 0.80362 0.91733 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.93 10.69 55.43 0.59 -22.34 16 2 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 3 Si 0.90 19.64 29.54 -169.99 -5.02 14.62 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.33 8.28 -34.44 -0.29 -13.62 16 8 H 0.07 1.62 7.79 -52.49 -0.41 1.21 16 9 C 0.25 5.64 0.88 -89.47 -0.08 5.56 16 10 O -0.58 -14.01 13.17 -35.23 -0.46 -14.47 16 11 C -0.12 -2.16 6.15 -24.74 -0.15 -2.31 16 12 C 0.09 1.42 4.84 -3.07 -0.01 1.40 16 13 N -0.60 -11.34 3.33 -172.75 -0.57 -11.91 16 14 C 0.57 10.73 7.80 -12.48 -0.10 10.64 16 15 O -0.55 -11.95 16.53 5.28 0.09 -11.86 16 16 C -0.14 -2.05 5.98 -103.47 -0.62 -2.66 16 17 C -0.13 -1.62 8.69 -37.22 -0.32 -1.95 16 18 C -0.09 -0.93 10.09 -39.41 -0.40 -1.33 16 19 C 0.01 0.10 6.78 -84.02 -0.57 -0.47 16 20 C -0.03 -0.32 12.00 -16.97 -0.20 -0.52 16 21 N -0.45 -5.88 11.19 -13.78 -0.15 -6.03 16 22 C 0.15 1.67 12.76 -89.37 -1.14 0.53 16 23 N -0.37 -4.72 2.94 -61.94 -0.18 -4.90 16 24 C 0.12 1.54 10.50 -16.22 -0.17 1.37 16 25 C 0.09 2.10 5.41 -2.53 -0.01 2.09 16 26 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.38 9.52 7.57 45.56 0.34 9.87 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.35 8.04 -51.93 -0.42 0.93 16 30 H 0.07 1.02 6.68 -51.93 -0.35 0.67 16 31 H 0.07 0.84 6.66 -51.93 -0.35 0.49 16 32 H 0.18 1.95 2.96 -53.78 -0.16 1.79 16 33 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.21 1.62 8.06 -52.48 -0.42 1.19 16 36 H 0.18 2.15 7.58 -52.49 -0.40 1.75 16 37 H 0.06 1.50 8.03 -51.93 -0.42 1.08 16 38 H 0.09 2.32 7.27 -51.93 -0.38 1.94 16 LS Contribution 317.34 15.07 4.78 4.78 Total: -1.00 -30.07 317.34 -8.44 -38.51 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -3.35 Total: 13.16 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.16 Total: 0.43 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.32 Total: -45.18 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -0.38 Total: -26.33 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.07 -8.44 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592851265.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.554 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds