Wall clock time and date at job start Tue Mar 31 2020 03:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48494 * 109.47291 * 270.00171 * 3 2 1 5 5 H 1.48497 * 109.46970 * 30.00300 * 3 2 1 6 6 H 1.48502 * 109.47343 * 149.99894 * 3 2 1 7 7 C 1.37877 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46757 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46937 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99555 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99940 * 180.02562 * 11 10 9 14 14 C 1.46386 * 119.70199 * 356.89475 * 13 11 10 15 15 C 1.53180 * 109.51089 * 115.42922 * 14 13 11 16 16 S 1.81668 * 108.94783 * 58.25981 * 15 14 13 17 17 O 1.42101 * 108.65322 * 58.78361 * 16 15 14 18 18 O 1.42100 * 108.65088 * 190.00263 * 16 15 14 19 19 C 1.81665 * 101.38664 * 304.43625 * 16 15 14 20 20 C 1.46392 * 119.69618 * 176.62296 * 13 11 10 21 21 H 1.08997 * 109.46472 * 124.55952 * 20 13 11 22 22 C 1.52998 * 109.46298 * 4.57947 * 20 13 11 23 23 C 1.53003 * 117.49980 * 257.45558 * 22 20 13 24 24 C 1.53004 * 117.49690 * 188.83188 * 22 20 13 25 25 H 0.97001 * 120.00122 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46925 * 60.00712 * 9 7 2 27 27 H 1.08992 * 109.46985 * 300.00068 * 9 7 2 28 28 H 1.08997 * 109.47863 * 60.00280 * 10 9 7 29 29 H 1.09006 * 109.47363 * 299.99682 * 10 9 7 30 30 H 1.09003 * 109.46460 * 235.44175 * 14 13 11 31 31 H 1.09004 * 109.46296 * 355.42243 * 14 13 11 32 32 H 1.09004 * 109.55825 * 178.09608 * 15 14 13 33 33 H 1.08995 * 109.55781 * 298.41880 * 15 14 13 34 34 H 1.09004 * 109.56206 * 175.40805 * 19 16 15 35 35 H 1.09008 * 109.56069 * 295.72336 * 19 16 15 36 36 H 1.08994 * 115.55323 * 43.16983 * 22 20 13 37 37 H 1.09001 * 117.49503 * 0.02562 * 23 22 20 38 38 H 1.08997 * 117.50102 * 145.02723 * 23 22 20 39 39 H 1.08997 * 117.50326 * 214.98328 * 24 22 20 40 40 H 1.09001 * 117.49756 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 3.6281 -6.1275 -0.0686 15 6 4.2030 -6.7096 1.2264 16 16 3.5655 -8.3961 1.4491 17 8 3.9437 -9.1773 0.3239 18 8 3.9094 -8.8435 2.7533 19 6 1.7722 -8.1132 1.3835 20 6 1.4291 -7.3971 0.0735 21 1 1.7067 -8.0297 -0.7696 22 6 -0.0737 -7.1142 0.0255 23 6 -0.8475 -7.1803 1.3438 24 6 -1.0218 -8.2837 0.2983 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 3.9553 -6.7314 -0.9150 31 1 3.9811 -5.1039 -0.1947 32 1 5.2909 -6.7362 1.1631 33 1 3.9001 -6.0906 2.0708 34 1 1.2501 -9.0693 1.4243 35 1 1.4692 -7.4941 2.2279 36 1 -0.3890 -6.3711 -0.7068 37 1 -0.2858 -7.4249 2.2453 38 1 -1.6721 -6.4804 1.4790 39 1 -1.9610 -8.3097 -0.2543 40 1 -0.5748 -9.2546 0.5123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597722417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:13 Heat of formation + Delta-G solvation = -51.980541 kcal Electronic energy + Delta-G solvation = -23554.377961 eV Core-core repulsion = 20077.664150 eV Total energy + Delta-G solvation = -3476.713811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.62482 -37.46766 -37.25485 -36.31583 -36.10133 -33.60021 -31.83131 -31.11702 -30.18868 -26.37783 -24.94257 -23.82226 -22.32062 -21.92573 -20.35544 -19.47503 -18.60116 -17.25443 -16.97949 -16.51511 -16.16580 -16.06377 -15.96026 -15.27759 -14.89258 -14.48779 -14.26005 -14.16637 -13.73525 -13.42624 -12.71801 -12.63017 -12.48270 -12.31996 -12.28617 -12.21877 -12.16626 -11.83309 -11.34255 -11.24308 -11.03592 -10.99421 -10.66610 -10.57954 -10.40241 -10.17610 -10.02346 -9.64533 -9.19741 -8.85511 -8.43468 -8.40196 -6.04336 -4.09138 -0.28351 2.34832 2.73578 2.90997 3.27828 3.34676 3.35575 3.36441 3.69784 3.93140 4.10077 4.30838 4.40625 4.45360 4.60980 4.71166 4.82404 5.00316 5.12146 5.16891 5.25097 5.31236 5.35875 5.42316 5.55849 5.66805 5.71253 6.01158 6.03787 6.05152 6.26678 6.29662 6.68272 6.71494 7.36853 7.64427 7.74159 7.96589 8.27791 8.50954 8.98695 9.55200 11.06428 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.004168 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.253698 B = 6716.007115 C = 7723.109889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.134 4.134 11 C 0.516 3.484 12 O -0.501 6.501 13 N -0.635 5.635 14 C 0.118 3.882 15 C -0.623 4.623 16 S 2.418 3.582 17 O -0.936 6.936 18 O -0.943 6.943 19 C -0.627 4.627 20 C 0.190 3.810 21 H 0.099 0.901 22 C -0.130 4.130 23 C -0.169 4.169 24 C -0.201 4.201 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.147 0.853 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.914 -17.032 1.200 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.174 4.174 11 C 0.307 3.693 12 O -0.375 6.375 13 N -0.371 5.371 14 C -0.006 4.006 15 C -0.754 4.754 16 S 2.600 3.400 17 O -0.933 6.933 18 O -0.940 6.940 19 C -0.757 4.757 20 C 0.086 3.914 21 H 0.117 0.883 22 C -0.148 4.148 23 C -0.206 4.206 24 C -0.239 4.239 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.137 0.863 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.571 -17.693 1.327 18.597 hybrid contribution 0.156 1.580 0.232 1.605 sum 5.727 -16.113 1.559 17.172 Atomic orbital electron populations 1.69982 1.06064 1.26688 1.49972 1.25006 0.94808 0.99234 0.95181 0.86602 0.79774 0.83514 0.78116 1.20632 1.21205 1.19898 1.21185 0.92889 0.90964 1.51717 0.92644 1.18909 0.93105 0.89294 0.98672 1.22011 1.00965 0.91893 1.02508 1.21676 0.88675 0.85171 0.73763 1.90628 1.13994 1.85855 1.47042 1.48411 1.06057 1.06222 1.76432 1.21342 0.79478 1.05838 0.93965 1.30611 1.12686 1.23829 1.08279 1.07990 0.78729 0.78028 0.75221 1.93590 1.81061 1.65934 1.52757 1.93600 1.81922 1.79179 1.39267 1.30867 1.25543 1.11057 1.08246 1.20305 0.93107 0.84708 0.93296 0.88318 1.22923 0.89033 0.99650 1.03231 1.22948 1.03384 1.01263 0.92970 1.23180 1.02087 0.93855 1.04783 0.92891 0.95734 0.95777 0.90046 0.89961 0.88848 0.86277 0.83542 0.84158 0.83835 0.83932 0.82903 0.89322 0.88779 0.88891 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.19 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.40 7.74 -52.48 -0.41 0.99 16 9 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 10 C -0.13 -2.39 3.96 -27.88 -0.11 -2.50 16 11 C 0.52 8.41 7.59 -10.98 -0.08 8.33 16 12 O -0.50 -9.73 11.20 5.56 0.06 -9.66 16 13 N -0.63 -7.55 2.80 -166.06 -0.47 -8.02 16 14 C 0.12 1.04 6.10 -4.01 -0.02 1.01 16 15 C -0.62 -4.56 6.55 37.25 0.24 -4.32 16 16 S 2.42 22.14 5.29 -107.50 -0.57 21.57 16 17 O -0.94 -10.96 18.02 -57.82 -1.04 -12.00 16 18 O -0.94 -11.81 18.10 -57.82 -1.05 -12.86 16 19 C -0.63 -5.59 4.63 37.25 0.17 -5.41 16 20 C 0.19 2.09 3.12 -67.90 -0.21 1.88 16 21 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.13 -1.69 3.85 -90.62 -0.35 -2.04 16 23 C -0.17 -2.15 9.27 -26.73 -0.25 -2.39 16 24 C -0.20 -2.21 9.89 -26.73 -0.26 -2.47 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.08 1.31 7.98 -51.93 -0.41 0.89 16 29 H 0.08 1.32 7.55 -51.93 -0.39 0.93 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.12 1.00 5.75 -51.93 -0.30 0.70 16 32 H 0.15 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.14 1.03 6.88 -51.93 -0.36 0.68 16 35 H 0.14 1.24 6.48 -51.92 -0.34 0.90 16 36 H 0.15 2.45 5.75 -53.81 -0.31 2.14 16 37 H 0.09 1.00 5.85 -51.93 -0.30 0.70 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.08 0.78 7.08 -51.93 -0.37 0.41 16 LS Contribution 327.76 15.07 4.94 4.94 Total: -1.00 -35.63 327.76 -9.51 -45.14 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.70 Total: 0.68 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -1.40 Total: -20.04 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.27 Total: -33.66 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -2.03 Total: -34.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 22.14 SS G_CDS: -0.57 Total: 21.57 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.63 -9.51 -45.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.839 kcal (2) G-P(sol) polarization free energy of solvation -35.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds