Wall clock time and date at job start Tue Mar 31 2020 03:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 119.99887 * 2 1 4 4 H 1.48494 * 109.47291 * 270.00171 * 3 2 1 5 5 H 1.48497 * 109.46970 * 30.00300 * 3 2 1 6 6 H 1.48502 * 109.47343 * 149.99894 * 3 2 1 7 7 C 1.37877 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99569 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00057 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46757 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.46937 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99555 * 359.97438 * 11 10 9 13 13 N 1.34772 * 119.99940 * 180.02562 * 11 10 9 14 14 C 1.46386 * 119.70199 * 356.89475 * 13 11 10 15 15 C 1.53180 * 109.51089 * 115.42922 * 14 13 11 16 16 S 1.81668 * 108.94783 * 58.25981 * 15 14 13 17 17 O 1.42101 * 108.65322 * 58.78361 * 16 15 14 18 18 O 1.42100 * 108.65088 * 190.00263 * 16 15 14 19 19 C 1.81665 * 101.38664 * 304.43625 * 16 15 14 20 20 C 1.46392 * 119.69618 * 176.62296 * 13 11 10 21 21 H 1.08997 * 109.46472 * 124.55952 * 20 13 11 22 22 C 1.52998 * 109.46298 * 4.57947 * 20 13 11 23 23 C 1.53003 * 117.49980 * 257.45558 * 22 20 13 24 24 C 1.53004 * 117.49690 * 188.83188 * 22 20 13 25 25 H 0.97001 * 120.00122 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46925 * 60.00712 * 9 7 2 27 27 H 1.08992 * 109.46985 * 300.00068 * 9 7 2 28 28 H 1.08997 * 109.47863 * 60.00280 * 10 9 7 29 29 H 1.09006 * 109.47363 * 299.99682 * 10 9 7 30 30 H 1.09003 * 109.46460 * 235.44175 * 14 13 11 31 31 H 1.09004 * 109.46296 * 355.42243 * 14 13 11 32 32 H 1.09004 * 109.55825 * 178.09608 * 15 14 13 33 33 H 1.08995 * 109.55781 * 298.41880 * 15 14 13 34 34 H 1.09004 * 109.56206 * 175.40805 * 19 16 15 35 35 H 1.09008 * 109.56069 * 295.72336 * 19 16 15 36 36 H 1.08994 * 115.55323 * 43.16983 * 22 20 13 37 37 H 1.09001 * 117.49503 * 0.02562 * 23 22 20 38 38 H 1.08997 * 117.50102 * 145.02723 * 23 22 20 39 39 H 1.08997 * 117.50326 * 214.98328 * 24 22 20 40 40 H 1.09001 * 117.49756 * 0.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2791 -4.9672 -0.0011 13 7 2.1658 -6.1343 -0.0008 14 6 3.6281 -6.1275 -0.0686 15 6 4.2030 -6.7096 1.2264 16 16 3.5655 -8.3961 1.4491 17 8 3.9437 -9.1773 0.3239 18 8 3.9094 -8.8435 2.7533 19 6 1.7722 -8.1132 1.3835 20 6 1.4291 -7.3971 0.0735 21 1 1.7067 -8.0297 -0.7696 22 6 -0.0737 -7.1142 0.0255 23 6 -0.8475 -7.1803 1.3438 24 6 -1.0218 -8.2837 0.2983 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6248 -2.5571 0.8896 28 1 2.8720 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 3.9553 -6.7314 -0.9150 31 1 3.9811 -5.1039 -0.1947 32 1 5.2909 -6.7362 1.1631 33 1 3.9001 -6.0906 2.0708 34 1 1.2501 -9.0693 1.4243 35 1 1.4692 -7.4941 2.2279 36 1 -0.3890 -6.3711 -0.7068 37 1 -0.2858 -7.4249 2.2453 38 1 -1.6721 -6.4804 1.4790 39 1 -1.9610 -8.3097 -0.2543 40 1 -0.5748 -9.2546 0.5123 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597722417.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:13 Heat of formation + Delta-G solvation = -78.267394 kcal Electronic energy + Delta-G solvation = -23555.517845 eV Core-core repulsion = 20077.664150 eV Total energy + Delta-G solvation = -3477.853695 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.71469 -38.55562 -38.11670 -37.15979 -37.05383 -35.54027 -33.14819 -32.31188 -31.20389 -27.97578 -26.06770 -24.78812 -23.59486 -23.15117 -21.53105 -20.45460 -19.57797 -18.65324 -17.93022 -17.67333 -17.19272 -17.10829 -16.91290 -16.51495 -16.18259 -15.85274 -15.33577 -15.12391 -14.95266 -14.31225 -14.17776 -13.84102 -13.60592 -13.36745 -13.23581 -13.19315 -13.08376 -12.94150 -12.82090 -12.70096 -12.45859 -12.28378 -11.91538 -11.85283 -11.55089 -11.52992 -11.23340 -11.15963 -11.07609 -10.54421 -9.84467 -9.64820 -8.16468 -6.29382 -0.99608 1.43693 1.45149 1.55717 1.65252 1.66412 1.80141 2.43689 2.65752 2.92572 3.03668 3.17611 3.26324 3.52641 3.77734 3.86406 3.89896 4.08053 4.15077 4.17909 4.22217 4.40285 4.49067 4.57484 4.66671 4.70481 4.79534 4.81627 4.90387 5.06815 5.12311 5.29183 5.32541 5.53319 5.65330 5.68110 5.88450 6.19766 6.24831 6.90130 7.28776 7.41192 8.95753 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019724 B = 0.004168 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.253698 B = 6716.007115 C = 7723.109889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.540 4.540 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.124 4.124 11 C 0.516 3.484 12 O -0.544 6.544 13 N -0.623 5.623 14 C 0.105 3.895 15 C -0.610 4.610 16 S 2.438 3.562 17 O -0.961 6.961 18 O -0.977 6.977 19 C -0.625 4.625 20 C 0.188 3.812 21 H 0.119 0.881 22 C -0.143 4.143 23 C -0.183 4.183 24 C -0.178 4.178 25 H 0.261 0.739 26 H -0.017 1.017 27 H -0.017 1.017 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.179 0.821 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.145 0.855 36 H 0.117 0.883 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.926 -17.901 1.318 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.179 1.179 7 C -0.578 4.578 8 H 0.094 0.906 9 C 0.006 3.994 10 C -0.164 4.164 11 C 0.306 3.694 12 O -0.422 6.422 13 N -0.358 5.358 14 C -0.018 4.018 15 C -0.743 4.743 16 S 2.623 3.377 17 O -0.958 6.958 18 O -0.974 6.974 19 C -0.755 4.755 20 C 0.084 3.916 21 H 0.136 0.864 22 C -0.162 4.162 23 C -0.220 4.220 24 C -0.216 4.216 25 H 0.070 0.930 26 H 0.001 0.999 27 H 0.001 0.999 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.197 0.803 33 H 0.169 0.831 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.135 0.865 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.632 -18.627 1.446 20.581 hybrid contribution -0.819 1.836 0.160 2.017 sum 7.813 -16.791 1.606 18.589 Atomic orbital electron populations 1.70162 1.08233 1.27630 1.51710 1.26055 0.95609 1.03702 0.94838 0.85412 0.78776 0.78192 0.78417 1.19883 1.21551 1.17878 1.21726 0.94001 0.91658 1.50369 0.90584 1.18679 0.93694 0.92292 0.94760 1.21774 0.99510 0.90268 1.04845 1.21349 0.88014 0.86074 0.73924 1.90670 1.15730 1.86651 1.49117 1.48261 1.07491 1.05189 1.74837 1.21734 0.77148 1.07249 0.95690 1.30532 1.14570 1.21356 1.07819 1.07290 0.78159 0.78473 0.73744 1.93557 1.81404 1.67584 1.53243 1.93561 1.82422 1.80574 1.40860 1.30854 1.25885 1.11826 1.06969 1.20417 0.91540 0.84356 0.95252 0.86369 1.22698 0.90954 1.00223 1.02330 1.22952 1.03096 1.02040 0.93935 1.23248 1.01470 0.94159 1.02716 0.93027 0.99853 0.99862 0.87565 0.87562 0.86454 0.85272 0.80330 0.83148 0.81859 0.83681 0.86534 0.87734 0.91544 0.88940 0.86859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 42.80 29.54 68.60 2.03 44.83 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.54 -29.00 9.11 25.60 0.23 -28.76 16 8 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.04 2.24 4.26 29.85 0.13 2.36 16 10 C -0.12 -4.33 3.96 29.85 0.12 -4.21 16 11 C 0.52 16.79 7.59 87.66 0.67 17.46 16 12 O -0.54 -22.36 11.20 -3.02 -0.03 -22.39 16 13 N -0.62 -13.64 2.80 -797.69 -2.24 -15.88 16 14 C 0.10 1.44 6.10 86.46 0.53 1.97 16 15 C -0.61 -6.46 6.55 72.04 0.47 -5.99 16 16 S 2.44 37.65 5.29 -56.49 -0.30 37.35 16 17 O -0.96 -19.70 18.02 -127.38 -2.30 -21.99 16 18 O -0.98 -22.34 18.10 -127.38 -2.31 -24.65 16 19 C -0.63 -9.60 4.63 72.04 0.33 -9.26 16 20 C 0.19 3.79 3.12 45.07 0.14 3.93 16 21 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 22 C -0.14 -3.75 3.85 -10.79 -0.04 -3.79 16 23 C -0.18 -4.75 9.27 30.60 0.28 -4.46 16 24 C -0.18 -3.74 9.89 30.60 0.30 -3.43 16 25 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 26 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 27 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 28 H 0.11 3.15 7.98 -2.39 -0.02 3.13 16 29 H 0.11 3.17 7.55 -2.38 -0.02 3.15 16 30 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.13 1.61 5.75 -2.38 -0.01 1.59 16 32 H 0.18 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.16 1.84 6.88 -2.39 -0.02 1.83 16 35 H 0.15 2.22 6.48 -2.38 -0.02 2.20 16 36 H 0.12 3.99 5.75 -32.11 -0.18 3.81 16 37 H 0.10 2.30 5.85 -2.39 -0.01 2.29 16 38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.11 1.73 7.08 -2.39 -0.02 1.72 16 Total: -1.00 -81.62 327.76 -0.36 -81.98 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.87 Total: 12.14 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 3.62 Total: -33.99 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -1.95 Total: -73.29 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -4.64 Total: -69.03 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: 37.65 SS G_CDS: -0.30 Total: 37.35 kcal Total: -81.62 -0.36 -81.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597722417.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.709 kcal (2) G-P(sol) polarization free energy of solvation -81.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds