Wall clock time and date at job start Tue Mar 31 2020 03:57:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45204 * 1
3 3 C 1.34229 * 116.99909 * 2 1
4 4 O 1.20820 * 120.00447 * 0.02562 * 3 2 1
5 5 C 1.50706 * 119.99671 * 180.02562 * 3 2 1
6 6 C 1.53002 * 110.38635 * 302.23496 * 5 3 2
7 7 C 1.54384 * 110.34267 * 64.46633 * 5 3 2
8 8 N 1.48141 * 104.61841 * 95.00370 * 7 5 3
9 9 C 1.34777 * 127.83838 * 219.60426 * 8 7 5
10 10 O 1.21285 * 120.00257 * 359.95033 * 9 8 7
11 11 C 1.50702 * 119.99816 * 179.97438 * 9 8 7
12 12 S 1.81008 * 109.46830 * 180.02562 * 11 9 8
13 13 C 1.76199 * 99.99665 * 179.97438 * 12 11 9
14 14 H 1.07998 * 120.00706 * 359.97438 * 13 12 11
15 15 C 1.38796 * 119.99690 * 179.97438 * 13 12 11
16 16 N 1.31638 * 120.00059 * 180.02562 * 15 13 12
17 17 Si 1.86801 * 120.00207 * 0.02562 * 15 13 12
18 18 H 1.48498 * 109.47213 * 90.00134 * 17 15 13
19 19 H 1.48509 * 109.47199 * 209.99989 * 17 15 13
20 20 H 1.48501 * 109.46906 * 329.99696 * 17 15 13
21 21 C 1.48150 * 104.32380 * 39.58435 * 8 7 5
22 22 C 1.54286 * 110.34211 * 180.02562 * 5 3 2
23 23 H 1.08997 * 110.34298 * 359.97438 * 22 5 3
24 24 C 1.52997 * 110.34370 * 122.25429 * 22 5 3
25 25 H 1.08992 * 109.47002 * 179.97438 * 1 2 3
26 26 H 1.08994 * 109.46900 * 300.00028 * 1 2 3
27 27 H 1.09004 * 109.46788 * 59.99588 * 1 2 3
28 28 H 1.09004 * 109.46776 * 297.76657 * 6 5 3
29 29 H 1.08991 * 109.47640 * 57.76753 * 6 5 3
30 30 H 1.09000 * 109.47101 * 177.77127 * 6 5 3
31 31 H 1.09006 * 110.40310 * 213.79035 * 7 5 3
32 32 H 1.09007 * 110.40957 * 336.21721 * 7 5 3
33 33 H 1.08998 * 109.47270 * 299.99802 * 11 9 8
34 34 H 1.08993 * 109.47407 * 60.00327 * 11 9 8
35 35 H 0.96994 * 119.99862 * 179.97438 * 16 15 13
36 36 H 1.09001 * 110.40703 * 201.63107 * 21 8 7
37 37 H 1.08996 * 110.40508 * 79.19821 * 21 8 7
38 38 H 1.09003 * 109.46909 * 60.00046 * 24 22 5
39 39 H 1.08997 * 109.47404 * 179.97438 * 24 22 5
40 40 H 1.09000 * 109.47555 * 300.00573 * 24 22 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5664 1.2748 -0.0006
6 6 4.1391 0.5385 1.2122
7 6 4.1345 0.6800 -1.3071
8 7 4.3205 1.8477 -2.1996
9 6 4.0788 1.9234 -3.5233
10 8 3.6576 0.9547 -4.1192
11 6 4.3325 3.2116 -4.2631
12 16 3.9141 2.9959 -6.0110
13 6 4.2943 4.6060 -6.6174
14 1 4.6655 5.3634 -5.9429
15 6 4.1167 4.9009 -7.9620
16 7 4.4011 6.1036 -8.4152
17 14 3.4739 3.5911 -9.1285
18 1 1.9910 3.6537 -9.1744
19 1 4.0217 3.8275 -10.4885
20 1 3.8983 2.2509 -8.6501
21 6 4.8321 2.9136 -1.3068
22 6 4.0264 2.7475 0.0002
23 1 3.1638 3.4139 0.0005
24 6 4.9162 3.0262 1.2132
25 1 -0.3633 -1.0276 -0.0005
26 1 -0.3633 0.5138 0.8899
27 1 -0.3633 0.5139 -0.8900
28 1 3.7916 1.0194 2.1266
29 1 3.8058 -0.4991 1.1981
30 1 5.2281 0.5708 1.1759
31 1 5.0897 0.1902 -1.1178
32 1 3.4257 -0.0234 -1.7442
33 1 3.7155 4.0028 -3.8372
34 1 5.3844 3.4820 -4.1717
35 1 4.2774 6.3095 -9.3549
36 1 4.6496 3.8954 -1.7437
37 1 5.8962 2.7726 -1.1175
38 1 5.7932 2.3799 1.1765
39 1 5.2330 4.0690 1.1995
40 1 4.3568 2.8280 2.1274
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601701954.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:57:53
Heat of formation + Delta-G solvation = -116.941268 kcal
Electronic energy + Delta-G solvation = -22915.739352 eV
Core-core repulsion = 19436.208632 eV
Total energy + Delta-G solvation = -3479.530720 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 301.118 amu
Computer time = 1.73 seconds
Orbital eigenvalues (eV)
-41.37092 -39.59754 -37.93618 -36.54817 -33.75434 -32.43367 -31.66217 -29.72279
-28.00074 -26.81207 -26.05057 -25.58402 -24.21440 -21.98349 -19.62372 -19.18733
-17.87122 -17.49585 -17.22566 -16.67516 -16.48249 -15.72216 -15.37291 -14.94392
-14.60632 -14.48876 -14.09131 -13.79399 -13.62514 -13.33887 -13.20942 -12.81228
-12.54583 -12.41539 -12.32946 -12.26438 -12.02586 -11.86495 -11.44996 -11.26972
-11.16994 -11.00701 -10.99997 -10.82698 -10.60369 -10.54026 -9.85858 -9.56898
-9.00058 -8.75730 -8.50153 -6.92070 -6.28460 -4.00410 1.97112 2.41153
2.63079 2.89822 3.15338 3.33844 3.50917 3.58464 3.92928 4.14878
4.33594 4.39245 4.61229 4.65709 4.74689 4.88688 4.97429 5.00975
5.05167 5.10608 5.11853 5.21307 5.23343 5.30059 5.37063 5.43007
5.54221 5.54976 5.62065 5.72232 5.76557 5.87294 5.98011 6.01251
6.18070 6.19097 7.50503 7.55177 7.94660 8.37733 8.42183 9.17680
10.80799
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.021716 B = 0.003729 C = 0.003465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.042860 B = 7507.387860 C = 8079.725604
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.355 6.355
3 C 0.474 3.526
4 O -0.499 6.499
5 C -0.066 4.066
6 C -0.137 4.137
7 C 0.120 3.880
8 N -0.631 5.631
9 C 0.555 3.445
10 O -0.516 6.516
11 C -0.118 4.118
12 S -0.142 6.142
13 C -0.521 4.521
14 H 0.088 0.912
15 C 0.097 3.903
16 N -0.880 5.880
17 Si 0.856 3.144
18 H -0.267 1.267
19 H -0.274 1.274
20 H -0.235 1.235
21 C 0.105 3.895
22 C -0.101 4.101
23 H 0.106 0.894
24 C -0.143 4.143
25 H 0.102 0.898
26 H 0.062 0.938
27 H 0.065 0.935
28 H 0.068 0.932
29 H 0.070 0.930
30 H 0.079 0.921
31 H 0.088 0.912
32 H 0.091 0.909
33 H 0.097 0.903
34 H 0.098 0.902
35 H 0.271 0.729
36 H 0.088 0.912
37 H 0.078 0.922
38 H 0.064 0.936
39 H 0.064 0.936
40 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.333 -10.930 23.574 25.987
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.059 4.059
2 O -0.271 6.271
3 C 0.317 3.683
4 O -0.385 6.385
5 C -0.068 4.068
6 C -0.195 4.195
7 C -0.004 4.004
8 N -0.368 5.368
9 C 0.343 3.657
10 O -0.390 6.390
11 C -0.268 4.268
12 S 0.085 5.915
13 C -0.668 4.668
14 H 0.106 0.894
15 C -0.112 4.112
16 N -0.517 5.517
17 Si 0.681 3.319
18 H -0.192 1.192
19 H -0.199 1.199
20 H -0.159 1.159
21 C -0.019 4.019
22 C -0.120 4.120
23 H 0.124 0.876
24 C -0.200 4.200
25 H 0.120 0.880
26 H 0.081 0.919
27 H 0.083 0.917
28 H 0.087 0.913
29 H 0.089 0.911
30 H 0.098 0.902
31 H 0.106 0.894
32 H 0.110 0.890
33 H 0.115 0.885
34 H 0.117 0.883
35 H 0.081 0.919
36 H 0.107 0.893
37 H 0.097 0.903
38 H 0.083 0.917
39 H 0.083 0.917
40 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -1.211 -11.936 22.373 25.386
hybrid contribution -0.083 0.981 0.039 0.985
sum -1.294 -10.955 22.411 24.979
Atomic orbital electron populations
1.23299 0.76078 1.03813 1.02682 1.86476 1.23583 1.33123 1.83965
1.23387 0.91568 0.81458 0.71927 1.90652 1.66741 1.36319 1.44787
1.21503 0.87578 0.98924 0.98815 1.21936 1.01962 1.00395 0.95159
1.22281 1.01704 0.89597 0.86780 1.48967 1.67171 1.13599 1.07051
1.19997 0.76285 0.90057 0.79312 1.90712 1.44147 1.38342 1.65787
1.23252 1.05516 0.97000 1.01025 1.84784 1.87337 1.20374 0.99025
1.22304 1.51144 0.95476 0.97913 0.89351 1.24700 0.93807 0.95425
0.97283 1.69939 1.46528 1.19550 1.15666 0.86744 0.80352 0.83908
0.80910 1.19201 1.19891 1.15918 1.22550 0.97880 0.92643 0.88793
1.22320 1.00317 0.93795 0.95583 0.87580 1.21918 0.99224 1.02275
0.96601 0.87953 0.91931 0.91650 0.91280 0.91061 0.90169 0.89412
0.89036 0.88489 0.88350 0.91930 0.89319 0.90341 0.91748 0.91739
0.91876
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.31 10.56 101.05 1.07 1.38 16
2 O -0.36 -4.01 10.28 -39.26 -0.40 -4.41 16
3 C 0.47 5.91 6.53 36.01 0.23 6.14 16
4 O -0.50 -7.57 15.01 -18.74 -0.28 -7.85 16
5 C -0.07 -0.64 0.97 -154.26 -0.15 -0.79 16
6 C -0.14 -0.86 7.21 37.16 0.27 -0.59 16
7 C 0.12 1.38 6.13 -2.41 -0.01 1.37 16
8 N -0.63 -9.04 3.32 -169.28 -0.56 -9.60 16
9 C 0.55 10.58 7.93 -10.98 -0.09 10.49 16
10 O -0.52 -11.67 16.13 5.55 0.09 -11.58 16
11 C -0.12 -2.38 5.14 36.01 0.18 -2.20 16
12 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16
13 C -0.52 -15.20 10.04 30.94 0.31 -14.88 16
14 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16
15 C 0.10 2.85 5.50 -17.43 -0.10 2.75 16
16 N -0.88 -26.76 13.97 55.49 0.78 -25.98 16
17 Si 0.86 22.01 27.74 -169.99 -4.71 17.29 16
18 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16
19 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16
20 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16
21 C 0.10 1.11 6.46 -2.38 -0.02 1.09 16
22 C -0.10 -0.95 3.25 -89.20 -0.29 -1.24 16
23 H 0.11 1.23 6.47 -51.93 -0.34 0.90 16
24 C -0.14 -0.89 7.94 37.16 0.30 -0.60 16
25 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16
26 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16
27 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16
28 H 0.07 0.39 6.80 -51.93 -0.35 0.04 16
29 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16
30 H 0.08 0.37 6.75 -51.93 -0.35 0.02 16
31 H 0.09 0.80 7.83 -51.93 -0.41 0.39 16
32 H 0.09 1.23 7.47 -51.93 -0.39 0.84 16
33 H 0.10 1.88 7.95 -51.92 -0.41 1.47 16
34 H 0.10 1.84 8.14 -51.92 -0.42 1.41 16
35 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16
36 H 0.09 0.97 7.30 -51.93 -0.38 0.59 16
37 H 0.08 0.66 7.83 -51.93 -0.41 0.25 16
38 H 0.06 0.32 6.75 -51.93 -0.35 -0.03 16
39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.06 0.36 6.80 -51.93 -0.35 0.01 16
LS Contribution 340.65 15.07 5.13 5.13
Total: -1.00 -36.11 340.65 -6.09 -42.21
By element:
Atomic # 1 Polarization: 3.38 SS G_CDS: -5.85 Total: -2.47 kcal
Atomic # 6 Polarization: 1.22 SS G_CDS: 1.71 Total: 2.93 kcal
Atomic # 7 Polarization: -35.80 SS G_CDS: 0.21 Total: -35.58 kcal
Atomic # 8 Polarization: -23.25 SS G_CDS: -0.60 Total: -23.85 kcal
Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal
Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal
Total LS contribution 5.13 Total: 5.13 kcal
Total: -36.11 -6.09 -42.21 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601701954.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.733 kcal
(2) G-P(sol) polarization free energy of solvation -36.115 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.847 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.941 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.73 seconds