Wall clock time and date at job start Tue Mar 31 2020 03:57:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45204 * 1
3 3 C 1.34229 * 116.99909 * 2 1
4 4 O 1.20820 * 120.00447 * 0.02562 * 3 2 1
5 5 C 1.50706 * 119.99671 * 180.02562 * 3 2 1
6 6 C 1.53002 * 110.38635 * 302.23496 * 5 3 2
7 7 C 1.54384 * 110.34267 * 64.46633 * 5 3 2
8 8 N 1.48141 * 104.61841 * 95.00370 * 7 5 3
9 9 C 1.34777 * 127.83838 * 219.60426 * 8 7 5
10 10 O 1.21285 * 120.00257 * 359.95033 * 9 8 7
11 11 C 1.50702 * 119.99816 * 179.97438 * 9 8 7
12 12 S 1.81008 * 109.46830 * 180.02562 * 11 9 8
13 13 C 1.76199 * 99.99665 * 179.97438 * 12 11 9
14 14 H 1.07998 * 120.00706 * 359.97438 * 13 12 11
15 15 C 1.38796 * 119.99690 * 179.97438 * 13 12 11
16 16 N 1.31638 * 120.00059 * 180.02562 * 15 13 12
17 17 Si 1.86801 * 120.00207 * 0.02562 * 15 13 12
18 18 H 1.48498 * 109.47213 * 90.00134 * 17 15 13
19 19 H 1.48509 * 109.47199 * 209.99989 * 17 15 13
20 20 H 1.48501 * 109.46906 * 329.99696 * 17 15 13
21 21 C 1.48150 * 104.32380 * 39.58435 * 8 7 5
22 22 C 1.54286 * 110.34211 * 180.02562 * 5 3 2
23 23 H 1.08997 * 110.34298 * 359.97438 * 22 5 3
24 24 C 1.52997 * 110.34370 * 122.25429 * 22 5 3
25 25 H 1.08992 * 109.47002 * 179.97438 * 1 2 3
26 26 H 1.08994 * 109.46900 * 300.00028 * 1 2 3
27 27 H 1.09004 * 109.46788 * 59.99588 * 1 2 3
28 28 H 1.09004 * 109.46776 * 297.76657 * 6 5 3
29 29 H 1.08991 * 109.47640 * 57.76753 * 6 5 3
30 30 H 1.09000 * 109.47101 * 177.77127 * 6 5 3
31 31 H 1.09006 * 110.40310 * 213.79035 * 7 5 3
32 32 H 1.09007 * 110.40957 * 336.21721 * 7 5 3
33 33 H 1.08998 * 109.47270 * 299.99802 * 11 9 8
34 34 H 1.08993 * 109.47407 * 60.00327 * 11 9 8
35 35 H 0.96994 * 119.99862 * 179.97438 * 16 15 13
36 36 H 1.09001 * 110.40703 * 201.63107 * 21 8 7
37 37 H 1.08996 * 110.40508 * 79.19821 * 21 8 7
38 38 H 1.09003 * 109.46909 * 60.00046 * 24 22 5
39 39 H 1.08997 * 109.47404 * 179.97438 * 24 22 5
40 40 H 1.09000 * 109.47555 * 300.00573 * 24 22 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0614 1.1960 0.0000
4 8 1.4034 2.2093 0.0005
5 6 3.5664 1.2748 -0.0006
6 6 4.1391 0.5385 1.2122
7 6 4.1345 0.6800 -1.3071
8 7 4.3205 1.8477 -2.1996
9 6 4.0788 1.9234 -3.5233
10 8 3.6576 0.9547 -4.1192
11 6 4.3325 3.2116 -4.2631
12 16 3.9141 2.9959 -6.0110
13 6 4.2943 4.6060 -6.6174
14 1 4.6655 5.3634 -5.9429
15 6 4.1167 4.9009 -7.9620
16 7 4.4011 6.1036 -8.4152
17 14 3.4739 3.5911 -9.1285
18 1 1.9910 3.6537 -9.1744
19 1 4.0217 3.8275 -10.4885
20 1 3.8983 2.2509 -8.6501
21 6 4.8321 2.9136 -1.3068
22 6 4.0264 2.7475 0.0002
23 1 3.1638 3.4139 0.0005
24 6 4.9162 3.0262 1.2132
25 1 -0.3633 -1.0276 -0.0005
26 1 -0.3633 0.5138 0.8899
27 1 -0.3633 0.5139 -0.8900
28 1 3.7916 1.0194 2.1266
29 1 3.8058 -0.4991 1.1981
30 1 5.2281 0.5708 1.1759
31 1 5.0897 0.1902 -1.1178
32 1 3.4257 -0.0234 -1.7442
33 1 3.7155 4.0028 -3.8372
34 1 5.3844 3.4820 -4.1717
35 1 4.2774 6.3095 -9.3549
36 1 4.6496 3.8954 -1.7437
37 1 5.8962 2.7726 -1.1175
38 1 5.7932 2.3799 1.1765
39 1 5.2330 4.0690 1.1995
40 1 4.3568 2.8280 2.1274
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601701954.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:57:52
Heat of formation + Delta-G solvation = -141.344691 kcal
Electronic energy + Delta-G solvation = -22916.797564 eV
Core-core repulsion = 19436.208632 eV
Total energy + Delta-G solvation = -3480.588932 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 301.118 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-42.30547 -40.77280 -39.10934 -37.54459 -34.82066 -34.69122 -32.42072 -31.18366
-28.75160 -27.98450 -27.60675 -26.76702 -25.17326 -22.83586 -20.99692 -20.08522
-19.62707 -18.54354 -18.38830 -17.70247 -17.60811 -17.17203 -16.88886 -16.62219
-15.81830 -15.49626 -15.28604 -14.94623 -14.80269 -14.71933 -14.32955 -13.94311
-13.65566 -13.46931 -13.36583 -13.12807 -13.07224 -13.03195 -12.99342 -12.70700
-12.41035 -12.18522 -11.90418 -11.89224 -11.81913 -11.52553 -11.44934 -11.19962
-11.10115 -10.59186 -9.92584 -9.05079 -8.54181 -6.26250 0.89954 1.01691
1.29313 1.41087 1.41201 1.49663 1.62342 1.94338 2.22746 2.63256
2.83989 3.11871 3.32753 3.62434 3.64061 3.89246 4.02856 4.11061
4.21130 4.22519 4.26746 4.33774 4.42784 4.51030 4.58147 4.60051
4.66789 4.75532 4.80118 4.93855 5.10840 5.14796 5.19248 5.26429
5.34394 5.53554 5.68152 6.08398 6.27070 6.57857 6.90560 6.94377
8.58367
Molecular weight = 301.12amu
Principal moments of inertia in cm(-1)
A = 0.021716 B = 0.003729 C = 0.003465
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1289.042860 B = 7507.387860 C = 8079.725604
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.358 6.358
3 C 0.466 3.534
4 O -0.535 6.535
5 C -0.060 4.060
6 C -0.133 4.133
7 C 0.116 3.884
8 N -0.627 5.627
9 C 0.554 3.446
10 O -0.562 6.562
11 C -0.103 4.103
12 S -0.173 6.173
13 C -0.530 4.530
14 H 0.062 0.938
15 C 0.048 3.952
16 N -0.915 5.915
17 Si 0.913 3.087
18 H -0.264 1.264
19 H -0.255 1.255
20 H -0.237 1.237
21 C 0.097 3.903
22 C -0.096 4.096
23 H 0.078 0.922
24 C -0.137 4.137
25 H 0.134 0.866
26 H 0.069 0.931
27 H 0.046 0.954
28 H 0.078 0.922
29 H 0.075 0.925
30 H 0.107 0.893
31 H 0.125 0.875
32 H 0.068 0.932
33 H 0.103 0.897
34 H 0.117 0.883
35 H 0.278 0.722
36 H 0.081 0.919
37 H 0.114 0.886
38 H 0.088 0.912
39 H 0.068 0.932
40 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.855 -12.411 25.675 28.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.274 6.274
3 C 0.310 3.690
4 O -0.425 6.425
5 C -0.062 4.062
6 C -0.190 4.190
7 C -0.006 4.006
8 N -0.361 5.361
9 C 0.342 3.658
10 O -0.440 6.440
11 C -0.253 4.253
12 S 0.054 5.946
13 C -0.678 4.678
14 H 0.080 0.920
15 C -0.157 4.157
16 N -0.553 5.553
17 Si 0.735 3.265
18 H -0.188 1.188
19 H -0.179 1.179
20 H -0.161 1.161
21 C -0.025 4.025
22 C -0.116 4.116
23 H 0.097 0.903
24 C -0.194 4.194
25 H 0.152 0.848
26 H 0.088 0.912
27 H 0.065 0.935
28 H 0.097 0.903
29 H 0.093 0.907
30 H 0.126 0.874
31 H 0.142 0.858
32 H 0.087 0.913
33 H 0.121 0.879
34 H 0.135 0.865
35 H 0.087 0.913
36 H 0.100 0.900
37 H 0.132 0.868
38 H 0.106 0.894
39 H 0.087 0.913
40 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -0.003 -13.411 24.536 27.962
hybrid contribution -0.476 1.468 -0.430 1.603
sum -0.479 -11.943 24.105 26.906
Atomic orbital electron populations
1.23534 0.75037 1.05788 1.02151 1.86478 1.24743 1.32661 1.83497
1.24099 0.92867 0.81180 0.70829 1.90638 1.67800 1.37435 1.46578
1.21624 0.85666 0.99512 0.99417 1.22005 1.03439 1.00077 0.93431
1.22578 1.03125 0.88339 0.86560 1.48917 1.65312 1.15925 1.05955
1.19626 0.76500 0.88757 0.80916 1.90687 1.46682 1.39334 1.67302
1.23194 1.06656 0.98459 0.97040 1.84689 1.87748 1.18291 1.03918
1.22428 1.50850 0.96519 0.97980 0.91951 1.25536 0.93967 0.97380
0.98837 1.70012 1.47539 1.21213 1.16560 0.85890 0.79877 0.81195
0.79552 1.18837 1.17937 1.16068 1.22931 0.99916 0.91255 0.88380
1.22278 0.99832 0.93006 0.96435 0.90344 1.21923 0.99342 1.03184
0.94957 0.84774 0.91203 0.93476 0.90297 0.90651 0.87445 0.85768
0.91306 0.87852 0.86528 0.91260 0.90013 0.86782 0.89359 0.91292
0.91088
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.49 10.56 113.37 1.20 1.69 16
2 O -0.36 -7.83 10.28 -51.41 -0.53 -8.36 16
3 C 0.47 11.35 6.53 71.24 0.46 11.81 16
4 O -0.54 -16.53 15.01 21.98 0.33 -16.20 16
5 C -0.06 -1.03 0.97 -52.02 -0.05 -1.08 16
6 C -0.13 -1.13 7.21 71.98 0.52 -0.61 16
7 C 0.12 2.43 6.13 86.53 0.53 2.96 16
8 N -0.63 -17.03 3.32 -807.87 -2.68 -19.71 16
9 C 0.55 20.96 7.93 87.66 0.70 21.66 16
10 O -0.56 -25.68 16.13 -3.04 -0.05 -25.73 16
11 C -0.10 -4.17 5.14 71.24 0.37 -3.80 16
12 S -0.17 -9.07 18.55 -56.49 -1.05 -10.12 16
13 C -0.53 -31.54 10.04 67.95 0.68 -30.86 16
14 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16
15 C 0.05 2.88 5.50 84.86 0.47 3.35 16
16 N -0.92 -56.30 13.97 21.65 0.30 -55.99 16
17 Si 0.91 45.63 27.74 68.60 1.90 47.54 16
18 H -0.26 -12.92 7.11 99.48 0.71 -12.22 16
19 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16
20 H -0.24 -11.82 6.74 99.48 0.67 -11.15 16
21 C 0.10 1.82 6.46 86.55 0.56 2.38 16
22 C -0.10 -1.60 3.25 -9.87 -0.03 -1.63 16
23 H 0.08 1.79 6.47 -2.39 -0.02 1.77 16
24 C -0.14 -1.18 7.94 71.98 0.57 -0.60 16
25 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16
26 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16
27 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16
28 H 0.08 0.57 6.80 -2.38 -0.02 0.56 16
29 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16
30 H 0.11 0.38 6.75 -2.39 -0.02 0.36 16
31 H 0.12 1.75 7.83 -2.38 -0.02 1.73 16
32 H 0.07 1.79 7.47 -2.38 -0.02 1.78 16
33 H 0.10 4.03 7.95 -2.40 -0.02 4.01 16
34 H 0.12 4.27 8.14 -2.40 -0.02 4.25 16
35 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16
36 H 0.08 1.66 7.30 -2.39 -0.02 1.65 16
37 H 0.11 1.42 7.83 -2.39 -0.02 1.40 16
38 H 0.09 0.38 6.75 -2.39 -0.02 0.36 16
39 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16
40 H 0.07 0.54 6.80 -2.39 -0.02 0.53 16
Total: -1.00 -81.16 340.65 5.20 -75.96
By element:
Atomic # 1 Polarization: 6.35 SS G_CDS: 1.00 Total: 7.36 kcal
Atomic # 6 Polarization: -0.71 SS G_CDS: 5.97 Total: 5.27 kcal
Atomic # 7 Polarization: -73.33 SS G_CDS: -2.38 Total: -75.70 kcal
Atomic # 8 Polarization: -50.04 SS G_CDS: -0.25 Total: -50.29 kcal
Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.54 kcal
Atomic # 16 Polarization: -9.07 SS G_CDS: -1.05 Total: -10.12 kcal
Total: -81.16 5.20 -75.96 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601701954.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.389 kcal
(2) G-P(sol) polarization free energy of solvation -81.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.548 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds