Wall clock time and date at job start Tue Mar 31 2020 03:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99996 * 2 1 4 4 H 1.48498 * 109.47006 * 269.99900 * 3 2 1 5 5 H 1.48499 * 109.47115 * 29.99697 * 3 2 1 6 6 H 1.48504 * 109.47219 * 149.99846 * 3 2 1 7 7 C 1.37879 * 120.00220 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00036 * 173.01512 * 7 2 1 9 9 C 1.50704 * 119.99525 * 353.01774 * 7 2 1 10 10 C 1.52998 * 115.55252 * 84.78437 * 9 7 2 11 11 S 1.81402 * 109.46980 * 39.91449 * 10 9 7 12 12 O 1.42091 * 110.54626 * 62.31305 * 11 10 9 13 13 O 1.42103 * 110.54315 * 285.56064 * 11 10 9 14 14 N 1.65597 * 104.44937 * 173.93849 * 11 10 9 15 15 C 1.47193 * 126.70440 * 89.99938 * 14 11 10 16 16 C 1.53726 * 106.50149 * 211.45949 * 15 14 11 17 17 H 1.08998 * 112.53144 * 217.40933 * 16 15 14 18 18 C 1.54554 * 108.96992 * 91.81402 * 16 15 14 19 19 O 1.44619 * 104.49290 * 222.99600 * 18 16 15 20 20 C 1.44624 * 104.50530 * 42.79056 * 19 18 16 21 21 C 1.54545 * 104.49354 * 317.20705 * 20 19 18 22 22 H 1.09001 * 112.57209 * 263.21731 * 21 20 19 23 23 C 1.47312 * 126.77599 * 270.04096 * 14 11 10 24 24 C 1.53003 * 117.51274 * 230.48091 * 9 7 2 25 25 C 1.52998 * 117.49714 * 299.10918 * 9 7 2 26 26 H 0.96995 * 119.99454 * 5.03627 * 1 2 3 27 27 H 1.08992 * 109.47200 * 279.91398 * 10 9 7 28 28 H 1.08999 * 109.47132 * 159.90957 * 10 9 7 29 29 H 1.08997 * 110.06063 * 92.18775 * 15 14 11 30 30 H 1.09003 * 110.06064 * 330.73391 * 15 14 11 31 31 H 1.08995 * 110.43352 * 341.75241 * 18 16 15 32 32 H 1.09002 * 110.42345 * 104.12146 * 18 16 15 33 33 H 1.09002 * 110.42820 * 75.96318 * 20 19 18 34 34 H 1.08997 * 110.43027 * 198.44985 * 20 19 18 35 35 H 1.08996 * 110.04570 * 29.28744 * 23 14 11 36 36 H 1.09005 * 110.05583 * 267.80073 * 23 14 11 37 37 H 1.08996 * 117.49791 * 214.96851 * 24 9 7 38 38 H 1.08994 * 117.50144 * 359.97438 * 24 9 7 39 39 H 1.08995 * 117.50361 * 359.97438 * 25 9 7 40 40 H 1.09002 * 117.49663 * 145.00305 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0786 -1.1975 -0.1132 9 6 1.2594 -2.4942 0.1598 10 6 0.6801 -3.0848 -1.1273 11 16 1.8651 -2.8604 -2.4823 12 8 3.0722 -3.5588 -2.2099 13 8 1.8832 -1.5053 -2.9097 14 7 1.1969 -3.6814 -3.7558 15 6 0.2746 -3.1380 -4.7661 16 6 -0.6434 -4.2967 -5.1875 17 1 -0.8793 -4.2770 -6.2515 18 6 -1.9080 -4.2844 -4.2991 19 8 -2.1276 -5.6737 -3.9627 20 6 -0.8102 -6.1840 -3.6533 21 6 0.1026 -5.5878 -4.7486 22 1 0.2705 -6.2785 -5.5749 23 6 1.4074 -5.0982 -4.0998 24 6 1.7652 -3.4733 1.2212 25 6 0.4653 -2.6997 1.4513 26 1 -0.4849 0.8368 -0.0737 27 1 -0.2525 -2.5769 -1.3724 28 1 0.4882 -4.1483 -0.9849 29 1 0.8355 -2.7735 -5.6267 30 1 -0.3169 -2.3297 -4.3362 31 1 -1.7339 -3.6975 -3.3974 32 1 -2.7582 -3.8862 -4.8530 33 1 -0.4928 -5.8449 -2.6672 34 1 -0.8027 -7.2728 -3.7027 35 1 1.6160 -5.6745 -3.1984 36 1 2.2338 -5.1930 -4.8042 37 1 1.6851 -4.5381 1.0026 38 1 2.6372 -3.1774 1.8042 39 1 0.4822 -1.8948 2.1860 40 1 -0.4699 -3.2556 1.3840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601980227.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:37 Heat of formation + Delta-G solvation = -108.304276 kcal Electronic energy + Delta-G solvation = -24324.410229 eV Core-core repulsion = 20845.254038 eV Total energy + Delta-G solvation = -3479.156192 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 4.47 seconds Orbital eigenvalues (eV) -41.27635 -38.57811 -37.93567 -37.39069 -36.73002 -34.13364 -31.94492 -31.76809 -29.93122 -27.56704 -27.19218 -25.32789 -23.00134 -22.88185 -21.39574 -20.97921 -19.95858 -18.74353 -18.27790 -17.34453 -16.96258 -16.85727 -16.56853 -16.31598 -16.27974 -15.85345 -15.50526 -14.97424 -14.72809 -14.15890 -13.99188 -13.76987 -13.73674 -13.09421 -13.07669 -12.97342 -12.86771 -12.83089 -12.66255 -12.44115 -12.42008 -12.13980 -12.00472 -11.88265 -11.80902 -11.71941 -11.59825 -10.90332 -10.81286 -10.55669 -10.14520 -9.79290 -8.25889 -6.44006 -0.55637 1.33684 1.39297 1.44394 2.02112 2.37004 2.97349 3.03283 3.09017 3.14015 3.32832 3.57081 3.59154 3.82667 3.98011 4.13143 4.19042 4.22763 4.32429 4.41941 4.49848 4.55074 4.56122 4.66443 4.79023 4.79523 4.82878 4.89558 4.94687 4.96671 4.99331 5.10827 5.15277 5.18774 5.36188 5.55990 5.57502 5.65341 5.77438 6.17106 6.65293 7.33971 8.81026 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.019500 B = 0.005822 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.517857 B = 4807.973280 C = 5001.189564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.059 3.941 3 Si 0.926 3.074 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.560 4.560 8 H 0.048 0.952 9 C 0.014 3.986 10 C -0.551 4.551 11 S 2.649 3.351 12 O -0.995 6.995 13 O -0.982 6.982 14 N -1.024 6.024 15 C 0.119 3.881 16 C -0.119 4.119 17 H 0.136 0.864 18 C 0.039 3.961 19 O -0.391 6.391 20 C 0.038 3.962 21 C -0.118 4.118 22 H 0.139 0.861 23 C 0.117 3.883 24 C -0.189 4.189 25 C -0.142 4.142 26 H 0.267 0.733 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.111 0.889 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.111 -12.360 -10.806 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.146 4.146 3 Si 0.751 3.249 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.597 4.597 8 H 0.066 0.934 9 C 0.012 3.988 10 C -0.684 4.684 11 S 2.748 3.252 12 O -0.986 6.986 13 O -0.972 6.972 14 N -0.862 5.862 15 C -0.007 4.007 16 C -0.139 4.139 17 H 0.154 0.846 18 C -0.037 4.037 19 O -0.310 6.310 20 C -0.038 4.038 21 C -0.138 4.138 22 H 0.156 0.844 23 C -0.007 4.007 24 C -0.226 4.226 25 C -0.181 4.181 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.146 0.854 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.129 0.871 33 H 0.069 0.931 34 H 0.135 0.865 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.599 -11.824 -10.697 16.346 hybrid contribution 0.024 1.245 0.621 1.391 sum -3.575 -10.579 -10.077 15.041 Atomic orbital electron populations 1.69988 1.06675 1.28007 1.47089 1.25443 0.95514 1.01490 0.92143 0.86040 0.79787 0.80609 0.78502 1.20461 1.19245 1.18956 1.20741 0.93007 0.90819 1.55148 0.93375 1.18320 1.00277 0.94094 0.86088 1.29890 1.15706 1.07894 1.14912 1.03668 0.75215 0.72341 0.73989 1.93426 1.43913 1.75373 1.85855 1.93470 1.86994 1.36039 1.80698 1.59004 1.63151 1.22054 1.42017 1.21876 0.90966 0.96411 0.91415 1.23492 0.94269 0.93715 1.02407 0.84608 1.23780 0.98669 0.83444 0.97854 1.89214 1.28437 1.24232 1.89111 1.23849 0.81941 1.01022 0.97004 1.23491 0.93841 0.97240 0.99211 0.84363 1.21960 0.98223 0.79572 1.00990 1.23207 0.97905 0.96796 1.04674 1.22468 0.93780 1.01013 1.00795 0.92368 0.86366 0.85447 0.90172 0.91265 0.93556 0.87094 0.93072 0.86500 0.90045 0.89950 0.88117 0.90021 0.91631 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.34 12.96 21.45 0.28 -49.06 16 2 C 0.06 3.32 5.39 84.65 0.46 3.78 16 3 Si 0.93 45.04 29.55 68.60 2.03 47.07 16 4 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 5 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.56 -31.40 6.89 25.60 0.18 -31.23 16 8 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 9 C 0.01 0.69 1.64 -52.93 -0.09 0.61 16 10 C -0.55 -22.96 6.29 71.98 0.45 -22.51 16 11 S 2.65 112.92 4.87 -56.49 -0.27 112.64 16 12 O -1.00 -46.22 17.67 -127.65 -2.26 -48.47 16 13 O -0.98 -50.15 16.79 -127.65 -2.14 -52.30 16 14 N -1.02 -31.16 3.63 -509.57 -1.85 -33.00 16 15 C 0.12 2.97 6.21 86.49 0.54 3.51 16 16 C -0.12 -2.12 4.20 -9.18 -0.04 -2.16 16 17 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 18 C 0.04 0.83 7.02 72.51 0.51 1.34 16 19 O -0.39 -9.13 11.69 -148.98 -1.74 -10.88 16 20 C 0.04 0.72 7.02 72.51 0.51 1.23 16 21 C -0.12 -1.94 4.20 -9.19 -0.04 -1.98 16 22 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 23 C 0.12 2.62 6.22 86.47 0.54 3.16 16 24 C -0.19 -7.96 9.88 30.60 0.30 -7.66 16 25 C -0.14 -6.38 9.50 30.59 0.29 -6.09 16 26 H 0.27 14.20 8.32 -92.71 -0.77 13.43 16 27 H 0.12 5.09 8.14 -2.39 -0.02 5.07 16 28 H 0.13 4.28 7.95 -2.39 -0.02 4.26 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.07 1.90 7.64 -2.39 -0.02 1.88 16 31 H 0.05 1.16 7.57 -2.39 -0.02 1.15 16 32 H 0.11 1.90 8.14 -2.39 -0.02 1.89 16 33 H 0.05 1.08 7.57 -2.39 -0.02 1.06 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.75 7.64 -2.39 -0.02 1.74 16 36 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 37 H 0.10 3.57 8.08 -2.39 -0.02 3.55 16 38 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -72.36 336.94 -1.33 -73.69 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 1.02 Total: 18.31 kcal Atomic # 6 Polarization: -61.61 SS G_CDS: 3.61 Total: -58.01 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.57 Total: -82.07 kcal Atomic # 8 Polarization: -105.50 SS G_CDS: -6.14 Total: -111.64 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Atomic # 16 Polarization: 112.92 SS G_CDS: -0.27 Total: 112.64 kcal Total: -72.36 -1.33 -73.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601980227.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.612 kcal (2) G-P(sol) polarization free energy of solvation -72.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.47 seconds