Wall clock time and date at job start Tue Mar 31 2020 04:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39677 * 120.05103 * 112.35107 * 3 2 1 5 5 C 1.38534 * 120.08734 * 179.97438 * 4 3 2 6 6 O 1.35916 * 119.90825 * 180.02562 * 5 4 3 7 7 C 1.38595 * 120.18333 * 0.02562 * 5 4 3 8 8 C 1.39583 * 120.10482 * 359.97438 * 7 5 4 9 9 C 1.47876 * 120.04571 * 180.02562 * 8 7 5 10 10 O 1.21556 * 119.99731 * 216.16033 * 9 8 7 11 11 N 1.34778 * 120.00410 * 36.42807 * 9 8 7 12 12 C 1.46968 * 120.58523 * 5.20710 * 11 9 8 13 13 C 1.53815 * 108.39238 * 124.76249 * 12 11 9 14 14 N 1.46958 * 108.58372 * 49.63250 * 13 12 11 15 15 C 1.36941 * 120.59493 * 124.62341 * 14 13 12 16 16 H 1.07995 * 120.00244 * 205.03365 * 15 14 13 17 17 C 1.38811 * 119.99878 * 25.03855 * 15 14 13 18 18 N 1.31617 * 120.00022 * 16.44866 * 17 15 14 19 19 Si 1.86794 * 120.00027 * 196.45531 * 17 15 14 20 20 H 1.48499 * 109.47280 * 89.99682 * 19 17 15 21 21 H 1.48506 * 109.47483 * 209.99557 * 19 17 15 22 22 H 1.48494 * 109.47203 * 329.99711 * 19 17 15 23 23 C 1.46963 * 118.81231 * 304.64567 * 14 13 12 24 24 C 1.46958 * 120.59791 * 185.48661 * 11 9 8 25 25 C 1.39343 * 119.91650 * 0.29507 * 8 7 5 26 26 H 1.08009 * 119.95716 * 0.02562 * 4 3 2 27 27 H 0.96705 * 114.00503 * 269.98025 * 6 5 4 28 28 H 1.08006 * 119.94969 * 179.97438 * 7 5 4 29 29 H 1.09002 * 109.60890 * 244.53895 * 12 11 9 30 30 H 1.08994 * 109.61570 * 5.05389 * 12 11 9 31 31 H 1.09002 * 109.74181 * 289.84224 * 13 12 11 32 32 H 1.09005 * 109.53186 * 169.30207 * 13 12 11 33 33 H 0.97004 * 120.00330 * 180.02562 * 18 17 15 34 34 H 1.09002 * 109.61331 * 295.48189 * 23 14 13 35 35 H 1.09000 * 109.60777 * 174.96875 * 23 14 13 36 36 H 1.08996 * 109.60944 * 354.95207 * 24 11 9 37 37 H 1.09004 * 109.60909 * 115.29078 * 24 11 9 38 38 H 1.07992 * 120.09572 * 179.70646 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 0.4607 -1.1182 5 6 4.6526 0.4622 -1.1188 6 8 5.3293 0.9111 -2.2086 7 6 5.3504 0.0071 -0.0112 8 6 4.6595 -0.4544 1.1105 9 6 5.4053 -0.9392 2.2918 10 8 4.9784 -1.8764 2.9375 11 7 6.5556 -0.3385 2.6558 12 6 7.0220 0.8685 1.9588 13 6 7.2417 1.9771 3.0022 14 7 8.0550 1.4336 4.0989 15 6 9.2242 2.0435 4.4681 16 1 10.0009 1.4724 4.9547 17 6 9.4109 3.3958 4.2168 18 7 8.3787 4.1607 3.9308 19 14 11.1272 4.1300 4.2843 20 1 11.7541 4.0478 2.9407 21 1 11.0413 5.5519 4.7042 22 1 11.9508 3.3742 5.2618 23 6 7.5913 0.2235 4.7921 24 6 7.3689 -0.8820 3.7525 25 6 3.2661 -0.4630 1.1135 26 1 2.7272 0.8166 -1.9832 27 1 5.5262 0.2241 -2.8601 28 1 6.4304 0.0095 -0.0159 29 1 7.9594 0.6550 1.4451 30 1 6.2706 1.1874 1.2366 31 1 6.2802 2.3123 3.3912 32 1 7.7640 2.8146 2.5396 33 1 8.5093 5.1057 3.7548 34 1 6.6547 0.4338 5.3085 35 1 8.3447 -0.0972 5.5116 36 1 6.8466 -1.7194 4.2150 37 1 8.3293 -1.2200 3.3630 38 1 2.7287 -0.8239 1.9780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614369675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:15 Heat of formation + Delta-G solvation = 25.623123 kcal Electronic energy + Delta-G solvation = -23982.905383 eV Core-core repulsion = 20406.405519 eV Total energy + Delta-G solvation = -3576.499864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.74748 -39.22094 -37.52828 -36.89259 -36.13350 -34.08726 -32.37086 -31.01860 -30.30162 -30.08456 -27.16606 -24.80936 -24.21212 -23.33739 -22.57331 -21.18075 -19.87438 -18.50499 -17.53375 -17.06740 -16.74389 -16.46477 -15.81281 -15.52418 -15.17436 -14.86044 -14.62173 -14.11403 -13.74890 -13.66294 -13.50930 -13.40853 -13.27457 -13.23950 -12.70009 -12.38815 -12.23126 -12.03443 -11.63586 -11.35150 -11.18041 -10.90450 -10.79855 -10.56602 -10.27782 -10.11005 -9.92843 -9.70578 -9.21795 -9.04541 -8.66789 -8.37682 -6.81635 -5.89305 -3.33371 0.30575 0.66422 2.35033 2.36647 2.97620 3.18234 3.31377 3.38919 3.40022 3.44008 3.57133 3.95446 4.37521 4.41733 4.65402 4.68029 4.82503 5.17348 5.22473 5.27020 5.31052 5.68185 5.74706 5.75300 5.81604 5.84917 5.92239 6.00837 6.06768 6.16891 6.26998 6.33839 6.69993 6.82351 7.14169 7.19420 7.28335 7.46069 7.64357 7.73542 8.29123 8.31602 9.06769 9.69319 10.23663 11.17465 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.003972 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.936713 B = 7047.392614 C = 7691.764625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.259 3.741 3 C -0.020 4.020 4 C -0.079 4.079 5 C 0.101 3.899 6 O -0.488 6.488 7 C -0.084 4.084 8 C -0.103 4.103 9 C 0.552 3.448 10 O -0.548 6.548 11 N -0.586 5.586 12 C 0.064 3.936 13 C 0.152 3.848 14 N -0.592 5.592 15 C -0.253 4.253 16 H 0.070 0.930 17 C 0.000 4.000 18 N -0.904 5.904 19 Si 0.907 3.093 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.131 3.869 24 C 0.095 3.905 25 C -0.026 4.026 26 H 0.143 0.857 27 H 0.394 0.606 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.023 0.977 32 H 0.112 0.888 33 H 0.256 0.744 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.986 -8.420 -11.670 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.057 4.057 3 C -0.024 4.024 4 C -0.100 4.100 5 C 0.056 3.944 6 O -0.298 6.298 7 C -0.103 4.103 8 C -0.106 4.106 9 C 0.339 3.661 10 O -0.427 6.427 11 N -0.317 5.317 12 C -0.059 4.059 13 C 0.026 3.974 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.088 0.912 17 C -0.198 4.198 18 N -0.549 5.549 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.004 3.996 24 C -0.028 4.028 25 C -0.047 4.047 26 H 0.160 0.840 27 H 0.250 0.750 28 H 0.169 0.831 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.130 0.870 33 H 0.066 0.934 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.949 -8.163 -11.026 15.378 hybrid contribution 1.384 0.198 -0.269 1.424 sum -5.565 -7.965 -11.295 14.899 Atomic orbital electron populations 1.81268 1.11862 1.08391 1.07196 1.25475 0.92377 0.93829 0.93981 1.15588 0.84562 1.06089 0.96125 1.21549 0.93709 0.96983 0.97800 1.17981 0.89171 0.98573 0.88639 1.84919 1.76063 1.38044 1.30817 1.22133 1.01975 0.94013 0.92204 1.19741 0.93513 1.02095 0.95262 1.18125 0.81045 0.83047 0.83888 1.90759 1.67852 1.29583 1.54546 1.48015 1.21443 1.27611 1.34583 1.23307 0.98978 0.86367 0.97296 1.21434 0.95107 0.93558 0.87333 1.44054 1.24265 1.27973 1.35218 1.19273 0.91623 0.91121 1.36203 0.91197 1.25011 0.97417 0.95783 1.01575 1.69962 1.28044 1.05115 1.51811 0.86217 0.83914 0.78307 0.77900 1.21357 1.21716 1.20441 1.21296 0.98022 0.87509 0.92796 1.22278 0.94061 0.97871 0.88614 1.21226 0.92666 0.93886 0.96956 0.83959 0.74999 0.83062 0.91347 0.89846 0.95855 0.87011 0.93394 0.95691 0.91376 0.89750 0.91545 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.49 18.54 41.84 0.78 -4.72 16 2 C 0.26 2.91 15.32 -22.47 -0.34 2.57 16 3 C -0.02 -0.20 5.72 -107.02 -0.61 -0.81 16 4 C -0.08 -0.67 9.68 -38.94 -0.38 -1.05 16 5 C 0.10 0.91 6.69 -39.34 -0.26 0.64 16 6 O -0.49 -3.77 13.49 -19.48 -0.26 -4.04 16 7 C -0.08 -0.88 7.27 -38.95 -0.28 -1.16 16 8 C -0.10 -1.30 5.28 -105.04 -0.55 -1.85 16 9 C 0.55 8.84 7.37 -12.31 -0.09 8.75 16 10 O -0.55 -10.17 16.25 5.32 0.09 -10.09 16 11 N -0.59 -9.75 2.94 -173.32 -0.51 -10.26 16 12 C 0.06 1.06 5.01 -3.36 -0.02 1.04 16 13 C 0.15 3.32 5.56 -3.37 -0.02 3.30 16 14 N -0.59 -13.82 2.98 -171.77 -0.51 -14.33 16 15 C -0.25 -6.48 9.62 -15.06 -0.14 -6.63 16 16 H 0.07 1.76 7.87 -52.49 -0.41 1.34 16 17 C 0.00 0.01 4.97 -17.43 -0.09 -0.08 16 18 N -0.90 -24.72 10.89 55.49 0.60 -24.12 16 19 Si 0.91 20.57 29.58 -169.99 -5.03 15.54 16 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 23 C 0.13 2.59 6.67 -3.60 -0.02 2.57 16 24 C 0.10 1.62 6.60 -3.60 -0.02 1.60 16 25 C -0.03 -0.30 9.31 -38.75 -0.36 -0.66 16 26 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 27 H 0.39 1.04 9.06 45.56 0.41 1.45 16 28 H 0.15 1.54 6.13 -52.48 -0.32 1.22 16 29 H 0.07 1.10 8.11 -51.93 -0.42 0.67 16 30 H 0.08 1.20 4.36 -51.93 -0.23 0.98 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.11 2.72 5.69 -51.93 -0.30 2.42 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 1.28 7.92 -51.93 -0.41 0.87 16 36 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.15 1.66 8.01 -52.49 -0.42 1.24 16 LS Contribution 326.02 15.07 4.91 4.91 Total: -1.00 -31.62 326.02 -6.42 -38.04 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -3.28 Total: 0.83 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: -3.20 Total: 8.23 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.36 Total: -53.44 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.18 Total: -14.12 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.62 -6.42 -38.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614369675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.666 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds