Wall clock time and date at job start Tue Mar 31 2020 04:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39677 * 120.05103 * 112.35107 * 3 2 1 5 5 C 1.38534 * 120.08734 * 179.97438 * 4 3 2 6 6 O 1.35916 * 119.90825 * 180.02562 * 5 4 3 7 7 C 1.38595 * 120.18333 * 0.02562 * 5 4 3 8 8 C 1.39583 * 120.10482 * 359.97438 * 7 5 4 9 9 C 1.47876 * 120.04571 * 180.02562 * 8 7 5 10 10 O 1.21556 * 119.99731 * 216.16033 * 9 8 7 11 11 N 1.34778 * 120.00410 * 36.42807 * 9 8 7 12 12 C 1.46968 * 120.58523 * 5.20710 * 11 9 8 13 13 C 1.53815 * 108.39238 * 124.76249 * 12 11 9 14 14 N 1.46958 * 108.58372 * 49.63250 * 13 12 11 15 15 C 1.36941 * 120.59493 * 124.62341 * 14 13 12 16 16 H 1.07995 * 120.00244 * 205.03365 * 15 14 13 17 17 C 1.38811 * 119.99878 * 25.03855 * 15 14 13 18 18 N 1.31617 * 120.00022 * 16.44866 * 17 15 14 19 19 Si 1.86794 * 120.00027 * 196.45531 * 17 15 14 20 20 H 1.48499 * 109.47280 * 89.99682 * 19 17 15 21 21 H 1.48506 * 109.47483 * 209.99557 * 19 17 15 22 22 H 1.48494 * 109.47203 * 329.99711 * 19 17 15 23 23 C 1.46963 * 118.81231 * 304.64567 * 14 13 12 24 24 C 1.46958 * 120.59791 * 185.48661 * 11 9 8 25 25 C 1.39343 * 119.91650 * 0.29507 * 8 7 5 26 26 H 1.08009 * 119.95716 * 0.02562 * 4 3 2 27 27 H 0.96705 * 114.00503 * 269.98025 * 6 5 4 28 28 H 1.08006 * 119.94969 * 179.97438 * 7 5 4 29 29 H 1.09002 * 109.60890 * 244.53895 * 12 11 9 30 30 H 1.08994 * 109.61570 * 5.05389 * 12 11 9 31 31 H 1.09002 * 109.74181 * 289.84224 * 13 12 11 32 32 H 1.09005 * 109.53186 * 169.30207 * 13 12 11 33 33 H 0.97004 * 120.00330 * 180.02562 * 18 17 15 34 34 H 1.09002 * 109.61331 * 295.48189 * 23 14 13 35 35 H 1.09000 * 109.60777 * 174.96875 * 23 14 13 36 36 H 1.08996 * 109.60944 * 354.95207 * 24 11 9 37 37 H 1.09004 * 109.60909 * 115.29078 * 24 11 9 38 38 H 1.07992 * 120.09572 * 179.70646 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2673 0.4607 -1.1182 5 6 4.6526 0.4622 -1.1188 6 8 5.3293 0.9111 -2.2086 7 6 5.3504 0.0071 -0.0112 8 6 4.6595 -0.4544 1.1105 9 6 5.4053 -0.9392 2.2918 10 8 4.9784 -1.8764 2.9375 11 7 6.5556 -0.3385 2.6558 12 6 7.0220 0.8685 1.9588 13 6 7.2417 1.9771 3.0022 14 7 8.0550 1.4336 4.0989 15 6 9.2242 2.0435 4.4681 16 1 10.0009 1.4724 4.9547 17 6 9.4109 3.3958 4.2168 18 7 8.3787 4.1607 3.9308 19 14 11.1272 4.1300 4.2843 20 1 11.7541 4.0478 2.9407 21 1 11.0413 5.5519 4.7042 22 1 11.9508 3.3742 5.2618 23 6 7.5913 0.2235 4.7921 24 6 7.3689 -0.8820 3.7525 25 6 3.2661 -0.4630 1.1135 26 1 2.7272 0.8166 -1.9832 27 1 5.5262 0.2241 -2.8601 28 1 6.4304 0.0095 -0.0159 29 1 7.9594 0.6550 1.4451 30 1 6.2706 1.1874 1.2366 31 1 6.2802 2.3123 3.3912 32 1 7.7640 2.8146 2.5396 33 1 8.5093 5.1057 3.7548 34 1 6.6547 0.4338 5.3085 35 1 8.3447 -0.0972 5.5116 36 1 6.8466 -1.7194 4.2150 37 1 8.3293 -1.2200 3.3630 38 1 2.7287 -0.8239 1.9780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614369675.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:14 Heat of formation + Delta-G solvation = 4.257452 kcal Electronic energy + Delta-G solvation = -23983.831868 eV Core-core repulsion = 20406.405519 eV Total energy + Delta-G solvation = -3577.426349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.78227 -40.27925 -38.53745 -38.20699 -37.03015 -35.70025 -33.68897 -32.51896 -31.56665 -31.09627 -28.78812 -26.09567 -25.33281 -24.74298 -23.89884 -22.36708 -21.13791 -19.86436 -18.55367 -18.23230 -17.82179 -17.39643 -17.04700 -16.85399 -16.59728 -16.15269 -15.68634 -15.42398 -15.16024 -15.06249 -15.00666 -14.78190 -14.33983 -14.18847 -14.03889 -13.43031 -13.30185 -13.20501 -12.93590 -12.85539 -12.63903 -12.45729 -12.19203 -12.02532 -11.88402 -11.83009 -11.67765 -10.95909 -10.57572 -10.13288 -9.90710 -9.79014 -8.67170 -7.84519 -5.31938 -0.52388 -0.16323 1.39788 1.46934 1.52253 1.53819 1.61898 1.82974 2.04921 2.53576 2.60361 2.66157 3.16966 3.29525 3.41395 3.61618 3.86607 3.88962 3.98114 4.23649 4.25927 4.34531 4.43366 4.50472 4.59429 4.66479 4.77983 4.82385 4.98804 5.00529 5.07213 5.10348 5.26095 5.40989 5.54575 5.63366 5.70409 6.30913 6.37248 6.40495 6.88007 7.03259 7.13410 7.81712 8.32651 9.19516 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.018119 B = 0.003972 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.936713 B = 7047.392614 C = 7691.764625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.281 3.719 3 C -0.017 4.017 4 C -0.060 4.060 5 C 0.117 3.883 6 O -0.494 6.494 7 C -0.083 4.083 8 C -0.120 4.120 9 C 0.554 3.446 10 O -0.577 6.577 11 N -0.592 5.592 12 C 0.084 3.916 13 C 0.156 3.844 14 N -0.609 5.609 15 C -0.261 4.261 16 H 0.073 0.927 17 C -0.049 4.049 18 N -0.935 5.935 19 Si 0.969 3.031 20 H -0.281 1.281 21 H -0.300 1.300 22 H -0.272 1.272 23 C 0.130 3.870 24 C 0.105 3.895 25 C -0.030 4.030 26 H 0.170 0.830 27 H 0.419 0.581 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.109 0.891 31 H -0.006 1.006 32 H 0.087 0.913 33 H 0.251 0.749 34 H 0.008 0.992 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 -8.926 -13.877 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.034 4.034 3 C -0.020 4.020 4 C -0.080 4.080 5 C 0.072 3.928 6 O -0.308 6.308 7 C -0.102 4.102 8 C -0.124 4.124 9 C 0.343 3.657 10 O -0.459 6.459 11 N -0.323 5.323 12 C -0.039 4.039 13 C 0.029 3.971 14 N -0.333 5.333 15 C -0.390 4.390 16 H 0.091 0.909 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.197 1.197 23 C 0.004 3.996 24 C -0.018 4.018 25 C -0.051 4.051 26 H 0.188 0.812 27 H 0.279 0.721 28 H 0.175 0.825 29 H 0.099 0.901 30 H 0.127 0.873 31 H 0.012 0.988 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.026 0.974 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.332 -8.710 -13.259 17.081 hybrid contribution 1.162 0.338 0.396 1.273 sum -5.170 -8.373 -12.863 16.195 Atomic orbital electron populations 1.81296 1.12981 1.09821 1.08447 1.25540 0.92366 0.92660 0.92827 1.15475 0.83721 1.06561 0.96280 1.21806 0.93629 0.94891 0.97720 1.17863 0.89191 0.97145 0.88616 1.84877 1.75746 1.39341 1.30813 1.22171 1.02276 0.93753 0.92027 1.19432 0.93638 1.04462 0.94841 1.18583 0.80387 0.82343 0.84376 1.90737 1.68316 1.30898 1.55922 1.48039 1.21898 1.27677 1.34636 1.23062 1.00536 0.84545 0.95750 1.21266 0.92943 0.94800 0.88046 1.44317 1.24057 1.28702 1.36209 1.19590 0.92481 0.91416 1.35544 0.90939 1.25707 1.00473 0.96205 1.01994 1.70127 1.29764 1.04972 1.53275 0.85239 0.80139 0.76834 0.78025 1.20758 1.22650 1.19668 1.21376 0.97257 0.87274 0.93715 1.22096 0.94978 0.96623 0.88145 1.21150 0.92341 0.94219 0.97396 0.81214 0.72063 0.82527 0.90053 0.87335 0.98799 0.89540 0.93942 0.97429 0.90655 0.89205 0.90183 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -11.56 18.54 19.00 0.35 -11.21 16 2 C 0.28 5.88 15.32 88.33 1.35 7.23 16 3 C -0.02 -0.30 5.72 -21.42 -0.12 -0.42 16 4 C -0.06 -0.79 9.68 22.69 0.22 -0.57 16 5 C 0.12 1.65 6.69 22.43 0.15 1.80 16 6 O -0.49 -5.48 13.49 -92.60 -1.25 -6.73 16 7 C -0.08 -1.52 7.27 22.68 0.16 -1.35 16 8 C -0.12 -2.86 5.28 -20.13 -0.11 -2.97 16 9 C 0.55 17.32 7.37 86.80 0.64 17.96 16 10 O -0.58 -21.32 16.25 -3.89 -0.06 -21.38 16 11 N -0.59 -19.19 2.94 -820.52 -2.41 -21.60 16 12 C 0.08 2.70 5.01 86.56 0.43 3.13 16 13 C 0.16 6.89 5.56 86.57 0.48 7.37 16 14 N -0.61 -28.70 2.98 -697.35 -2.08 -30.78 16 15 C -0.26 -13.39 9.62 84.03 0.81 -12.59 16 16 H 0.07 3.61 7.87 -2.91 -0.02 3.59 16 17 C -0.05 -2.55 4.97 84.86 0.42 -2.13 16 18 N -0.93 -52.15 10.89 21.65 0.24 -51.91 16 19 Si 0.97 42.35 29.58 68.60 2.03 44.38 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C 0.13 5.19 6.67 86.42 0.58 5.77 16 24 C 0.11 3.50 6.60 86.42 0.57 4.07 16 25 C -0.03 -0.64 9.31 22.81 0.21 -0.43 16 26 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 27 H 0.42 0.27 9.06 -74.05 -0.67 -0.40 16 28 H 0.16 2.71 6.13 -2.91 -0.02 2.69 16 29 H 0.08 2.43 8.11 -2.39 -0.02 2.41 16 30 H 0.11 2.93 4.36 -2.39 -0.01 2.92 16 31 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.09 4.29 5.69 -2.38 -0.01 4.28 16 33 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 35 H 0.08 2.83 7.92 -2.39 -0.02 2.81 16 36 H 0.09 2.91 6.99 -2.39 -0.02 2.89 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.14 3.13 8.01 -2.91 -0.02 3.11 16 Total: -1.00 -69.13 326.02 3.07 -66.06 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: 0.45 Total: 6.29 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 5.80 Total: 26.89 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -3.91 Total: -115.50 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.31 Total: -28.12 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.13 3.07 -66.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614369675.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.314 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds