Wall clock time and date at job start Tue Mar 31 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 H 1.08994 * 109.47445 * 7.89499 * 3 2 1 5 5 N 1.46504 * 109.46601 * 127.90029 * 3 2 1 6 6 S 1.65603 * 119.99554 * 264.99552 * 5 3 2 7 7 O 1.42105 * 104.27470 * 181.07533 * 6 5 3 8 8 O 1.42099 * 104.27751 * 308.92794 * 6 5 3 9 9 C 1.81400 * 104.44987 * 65.00159 * 6 5 3 10 10 C 1.52995 * 109.47023 * 179.97438 * 9 6 5 11 11 C 1.52998 * 109.47172 * 180.02562 * 10 9 6 12 12 C 1.50699 * 109.47449 * 180.02562 * 11 10 9 13 13 H 1.08003 * 120.00170 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00480 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99547 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00458 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46875 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47184 * 120.00037 * 16 14 12 19 19 H 1.48497 * 109.47358 * 240.00759 * 16 14 12 20 20 C 1.53001 * 109.46769 * 247.89559 * 3 2 1 21 21 H 1.08995 * 109.89605 * 64.48387 * 20 3 2 22 22 C 1.54383 * 109.82711 * 185.41794 * 20 3 2 23 23 C 1.55566 * 102.27674 * 140.86838 * 22 20 3 24 24 C 1.54944 * 100.82489 * 325.88222 * 23 22 20 25 25 O 1.43235 * 109.83049 * 303.54542 * 20 3 2 26 26 H 4.18738 * 15.03956 * 359.97438 * 4 2 1 27 27 H 0.96998 * 119.99993 * 85.00076 * 5 3 2 28 28 H 1.08995 * 109.47179 * 300.00119 * 9 6 5 29 29 H 1.09004 * 109.46867 * 60.00118 * 9 6 5 30 30 H 1.09004 * 109.47754 * 300.00162 * 10 9 6 31 31 H 1.09001 * 109.47298 * 60.00224 * 10 9 6 32 32 H 1.08998 * 109.47170 * 300.00010 * 11 10 9 33 33 H 1.08997 * 109.47165 * 60.00586 * 11 10 9 34 34 H 0.97006 * 119.99580 * 179.97438 * 15 14 12 35 35 H 1.09007 * 110.84628 * 259.06267 * 22 20 3 36 36 H 1.09002 * 110.85103 * 22.47208 * 22 20 3 37 37 H 1.08997 * 111.22347 * 207.97660 * 23 22 20 38 38 H 1.09003 * 111.13190 * 83.74257 * 23 22 20 39 39 H 1.09002 * 110.30953 * 277.47426 * 24 23 22 40 40 H 1.09000 * 110.30834 * 155.40499 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0099 -1.0170 -0.1411 5 7 3.1339 0.8494 -1.0900 6 16 3.5280 0.1761 -2.5507 7 8 3.9759 1.2743 -3.3333 8 8 4.4039 -0.8926 -2.2190 9 6 1.9569 -0.4644 -3.1926 10 6 2.1916 -1.1183 -4.5557 11 6 0.8664 -1.6579 -5.0974 12 6 1.0976 -2.3026 -6.4398 13 1 2.0906 -2.3255 -6.8640 14 6 0.0417 -2.8640 -7.1260 15 7 -1.1673 -2.8365 -6.6093 16 14 0.3282 -3.6625 -8.7903 17 1 1.7663 -3.5618 -9.1466 18 1 -0.0668 -5.0926 -8.7278 19 1 -0.4868 -2.9682 -9.8193 20 6 3.1557 0.5437 1.3365 21 1 2.8634 -0.1264 2.1449 22 6 4.6933 0.6759 1.2959 23 6 4.9311 2.0089 2.0619 24 6 3.6767 2.8147 1.6400 25 8 2.6151 1.8497 1.5683 26 1 -1.0500 -0.0012 0.0003 27 1 3.2261 1.8056 -0.9560 28 1 1.5552 -1.2031 -2.4991 29 1 1.2473 0.3559 -3.3009 30 1 2.5931 -0.3792 -5.2491 31 1 2.9014 -1.9385 -4.4479 32 1 0.4645 -2.3969 -4.4043 33 1 0.1570 -0.8374 -5.2055 34 1 -1.9103 -3.2312 -7.0923 35 1 5.1682 -0.1583 1.8125 36 1 5.0496 0.7468 0.2682 37 1 5.8446 2.4995 1.7259 38 1 4.9488 1.8452 3.1394 39 1 3.8341 3.2770 0.6655 40 1 3.4470 3.5752 2.3863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773057564.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:21 Heat of formation + Delta-G solvation = -102.022138 kcal Electronic energy + Delta-G solvation = -22704.142143 eV Core-core repulsion = 19225.258366 eV Total energy + Delta-G solvation = -3478.883778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79351 -38.28873 -37.16421 -36.88608 -36.49505 -34.19542 -33.34149 -32.82039 -30.74772 -29.67617 -26.72637 -25.64600 -22.92044 -22.45793 -22.20186 -20.62040 -19.47668 -18.96089 -18.60375 -17.78525 -17.48381 -17.09800 -16.84448 -16.48727 -16.21031 -15.88044 -15.56887 -14.86823 -14.54635 -14.47308 -14.11140 -13.86917 -13.57795 -13.29024 -13.21390 -13.19098 -13.02522 -12.79456 -12.71879 -12.64238 -12.55436 -12.18951 -12.10176 -11.78548 -11.73938 -11.48952 -11.41950 -11.26472 -11.19403 -10.80015 -10.59192 -10.38172 -8.23580 -6.34860 -0.83074 1.38101 1.39394 1.39934 1.53393 1.88530 2.13242 2.39158 2.64470 2.83528 3.09928 3.13881 3.36646 3.56868 3.67223 3.80375 3.85181 3.99820 4.05868 4.23799 4.32584 4.35769 4.44991 4.61927 4.71168 4.84299 4.91643 4.95044 4.98163 5.04277 5.07719 5.08532 5.30408 5.43928 5.60471 5.78074 5.89883 6.05516 6.18080 6.69017 6.80910 7.34646 8.88226 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.028633 B = 0.003328 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.667927 B = 8411.255090 C = 8984.448426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.234 4.234 3 C 0.243 3.757 4 H 0.131 0.869 5 N -1.096 6.096 6 S 2.630 3.370 7 O -0.986 6.986 8 O -0.975 6.975 9 C -0.609 4.609 10 C -0.105 4.105 11 C 0.032 3.968 12 C -0.552 4.552 13 H 0.061 0.939 14 C 0.002 3.998 15 N -0.930 5.930 16 Si 0.964 3.036 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.277 1.277 20 C 0.087 3.913 21 H 0.111 0.889 22 C -0.158 4.158 23 C -0.148 4.148 24 C 0.036 3.964 25 O -0.387 6.387 26 H 0.239 0.761 27 H 0.424 0.576 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.002 0.998 33 H 0.000 1.000 34 H 0.265 0.735 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 9.417 20.771 24.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.236 4.236 3 C 0.136 3.864 4 H 0.148 0.852 5 N -0.855 5.855 6 S 2.725 3.275 7 O -0.976 6.976 8 O -0.965 6.965 9 C -0.740 4.740 10 C -0.144 4.144 11 C -0.006 4.006 12 C -0.590 4.590 13 H 0.080 0.920 14 C -0.196 4.196 15 N -0.570 5.570 16 Si 0.789 3.211 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.203 1.203 20 C 0.027 3.973 21 H 0.129 0.871 22 C -0.196 4.196 23 C -0.186 4.186 24 C -0.040 4.040 25 O -0.307 6.307 26 H 0.255 0.745 27 H 0.261 0.739 28 H 0.156 0.844 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.190 9.223 20.370 24.573 hybrid contribution -1.137 -0.148 -0.932 1.478 sum 9.053 9.075 19.438 23.284 Atomic orbital electron populations 1.25690 0.96823 0.98694 0.97408 1.23531 0.95037 1.02062 1.02951 1.18333 0.83654 0.95901 0.88514 0.85184 1.55461 1.82882 1.19706 1.27468 1.04328 0.76547 0.73684 0.72964 1.93547 1.80564 1.53254 1.70244 1.93549 1.62142 1.58075 1.82763 1.30527 1.22593 1.12792 1.08084 1.21320 1.00911 0.99809 0.92353 1.18941 0.91912 0.94911 0.94824 1.21767 0.94961 1.37353 1.04886 0.92033 1.25956 0.94824 0.96641 1.02210 1.70088 1.00426 1.46250 1.40242 0.85405 0.78739 0.78112 0.78863 1.18665 1.20174 1.20261 1.23014 0.93877 0.86389 0.93992 0.87102 1.23326 0.93546 1.00120 1.02608 1.23310 0.98861 0.94713 1.01669 1.23645 0.86627 0.92214 1.01549 1.88493 1.32576 1.16575 1.93037 0.74488 0.73897 0.84357 0.84331 0.91482 0.91156 0.97963 0.98162 0.92635 0.87789 0.90531 0.88555 0.89072 0.92129 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 19.25 74.32 1.43 -2.23 16 2 C -0.23 -5.34 11.66 31.13 0.36 -4.98 16 3 C 0.24 4.91 2.56 43.19 0.11 5.02 16 4 H 0.13 2.41 7.48 -2.39 -0.02 2.39 16 5 N -1.10 -23.90 4.10 -177.01 -0.73 -24.62 16 6 S 2.63 75.58 5.44 -56.49 -0.31 75.27 16 7 O -0.99 -33.86 18.08 -127.65 -2.31 -36.17 16 8 O -0.98 -31.66 17.39 -127.65 -2.22 -33.88 16 9 C -0.61 -19.46 5.69 71.98 0.41 -19.05 16 10 C -0.10 -4.34 5.16 30.59 0.16 -4.18 16 11 C 0.03 1.70 4.97 29.85 0.15 1.85 16 12 C -0.55 -31.64 9.11 25.60 0.23 -31.41 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 14 C 0.00 0.11 5.46 84.65 0.46 0.57 16 15 N -0.93 -56.17 13.29 21.45 0.28 -55.88 16 16 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 17 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 C 0.09 1.42 3.34 31.06 0.10 1.52 16 21 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 22 C -0.16 -2.12 6.42 31.95 0.21 -1.92 16 23 C -0.15 -1.52 7.18 32.14 0.23 -1.29 16 24 C 0.04 0.48 7.51 72.65 0.55 1.02 16 25 O -0.39 -7.27 10.22 -148.98 -1.52 -8.79 16 26 H 0.24 3.79 7.80 -4.42 -0.03 3.75 16 27 H 0.42 8.18 7.82 -96.74 -0.76 7.43 16 28 H 0.14 4.07 7.73 -2.39 -0.02 4.05 16 29 H 0.14 4.13 8.14 -2.39 -0.02 4.11 16 30 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 31 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 35 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.08 1.24 6.95 -2.39 -0.02 1.22 16 37 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.79 7.71 -2.39 -0.02 0.77 16 40 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -74.99 350.64 -0.10 -75.09 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.27 Total: 17.66 kcal Atomic # 6 Polarization: -59.48 SS G_CDS: 4.40 Total: -55.07 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -0.44 Total: -80.50 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -6.05 Total: -78.84 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 16 Polarization: 75.58 SS G_CDS: -0.31 Total: 75.27 kcal Total: -74.99 -0.10 -75.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773057564.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.933 kcal (2) G-P(sol) polarization free energy of solvation -74.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds