Wall clock time and date at job start Tue Mar 31 2020 03:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47264 * 3.22957 * 3 2 1 5 5 C 1.37105 * 120.00319 * 263.73346 * 4 3 2 6 6 H 1.08000 * 120.00449 * 142.46400 * 5 4 3 7 7 C 1.38948 * 119.99638 * 322.46210 * 5 4 3 8 8 N 1.31413 * 120.00177 * 157.50665 * 7 5 4 9 9 Si 1.86808 * 120.00076 * 337.50961 * 7 5 4 10 10 H 1.48498 * 109.47041 * 95.70483 * 9 7 5 11 11 H 1.48499 * 109.46834 * 215.70353 * 9 7 5 12 12 H 1.48499 * 109.46988 * 335.70645 * 9 7 5 13 13 C 1.34782 * 120.00209 * 83.73080 * 4 3 2 14 14 O 1.21287 * 120.00161 * 179.97438 * 13 4 3 15 15 C 1.50693 * 119.99558 * 0.02562 * 13 4 3 16 16 N 1.46499 * 109.46993 * 179.97438 * 15 13 4 17 17 N 1.40160 * 126.01297 * 265.31116 * 16 15 13 18 18 H 0.97002 * 125.45435 * 359.97438 * 17 16 15 19 19 C 1.34332 * 109.08819 * 180.11793 * 17 16 15 20 20 C 1.38397 * 108.49998 * 359.61904 * 19 17 16 21 21 C 1.46807 * 134.77342 * 180.23833 * 20 19 17 22 22 O 1.22109 * 121.29841 * 0.02562 * 21 20 19 23 23 N 1.34410 * 117.40257 * 179.97438 * 21 20 19 24 24 C 1.31372 * 120.94575 * 359.97438 * 23 21 20 25 25 N 1.32033 * 123.74614 * 0.02562 * 24 23 21 26 26 C 1.32393 * 121.66532 * 0.02562 * 25 24 23 27 27 H 4.40643 * 5.51360 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.46939 * 243.23350 * 3 2 1 29 29 H 1.08997 * 109.47246 * 123.22934 * 3 2 1 30 30 H 0.97000 * 120.00122 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47532 * 59.99617 * 15 13 4 32 32 H 1.09000 * 109.47423 * 299.99626 * 15 13 4 33 33 H 1.08001 * 125.75111 * 179.87243 * 19 17 16 34 34 H 1.08006 * 118.12690 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3781 -0.0778 5 6 3.4860 -2.0467 1.0666 6 1 3.2666 -3.0994 1.1659 7 6 4.1242 -1.3696 2.0986 8 7 4.0715 -1.8401 3.3245 9 14 5.0570 0.2094 1.7435 10 1 4.1789 1.3753 2.0172 11 1 6.2591 0.2803 2.6125 12 1 5.4745 0.2279 0.3185 13 6 3.2398 -1.9895 -1.2744 14 8 3.6450 -3.1309 -1.3389 15 6 2.8544 -1.2545 -2.5322 16 7 3.0580 -2.1285 -3.6902 17 7 4.2016 -2.1714 -4.4994 18 1 4.9935 -1.6232 -4.3839 19 6 4.0242 -3.0910 -5.4624 20 6 2.7765 -3.6662 -5.2958 21 6 2.0152 -4.7063 -5.9986 22 8 2.4748 -5.2787 -6.9744 23 7 0.7931 -5.0047 -5.5253 24 6 0.3060 -4.3856 -4.4740 25 7 0.9538 -3.4451 -3.8113 26 6 2.1663 -3.0522 -4.1693 27 1 -1.0498 -0.0004 -0.0002 28 1 3.0091 0.4636 0.9175 29 1 3.0091 0.5640 -0.8596 30 1 4.5174 -1.3677 4.0449 31 1 3.4735 -0.3635 -2.6367 32 1 1.8055 -0.9635 -2.4762 33 1 4.7369 -3.3424 -6.2339 34 1 -0.6810 -4.6610 -4.1328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798801051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:19 Heat of formation + Delta-G solvation = 150.788726 kcal Electronic energy + Delta-G solvation = -23821.155487 eV Core-core repulsion = 20146.542867 eV Total energy + Delta-G solvation = -3674.612620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.096 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.27262 -39.41273 -38.88485 -36.77090 -35.78168 -33.88144 -32.90348 -32.22333 -31.88510 -30.45760 -28.44148 -27.06320 -25.09302 -24.82824 -23.17913 -21.29161 -20.03153 -19.06301 -18.68786 -18.25939 -17.25984 -16.87556 -16.48140 -16.14046 -15.82017 -15.61378 -15.12089 -14.86746 -14.37682 -14.14655 -13.68749 -13.61901 -13.55794 -13.35614 -12.96203 -12.54810 -12.37973 -12.14844 -11.24405 -11.07975 -11.07248 -10.57728 -10.40589 -10.04148 -9.84770 -9.71842 -9.58088 -9.45437 -8.94517 -8.46802 -8.24948 -7.83260 -6.69460 -4.29687 0.26246 0.70252 1.76593 2.58941 2.72065 2.85835 2.89351 2.92093 2.98459 3.10899 3.23651 3.82241 3.95025 4.07274 4.18120 4.40672 4.48967 4.52290 4.65550 4.77806 4.86642 4.94102 4.97085 5.09862 5.20169 5.38463 5.67064 5.94292 6.13138 6.17694 6.61317 6.73422 7.14670 7.58106 7.85090 7.90948 8.09319 8.38712 8.57378 8.86975 8.93389 9.25696 10.41642 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.004412 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.541102 B = 6344.501813 C = 6732.945375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.196 4.196 3 C 0.189 3.811 4 N -0.447 5.447 5 C -0.321 4.321 6 H 0.110 0.890 7 C 0.065 3.935 8 N -0.846 5.846 9 Si 0.869 3.131 10 H -0.270 1.270 11 H -0.279 1.279 12 H -0.264 1.264 13 C 0.444 3.556 14 O -0.539 6.539 15 C 0.110 3.890 16 N -0.342 5.342 17 N -0.421 5.421 18 H 0.459 0.541 19 C 0.251 3.749 20 C -0.385 4.385 21 C 0.565 3.435 22 O -0.532 6.532 23 N -0.649 5.649 24 C 0.429 3.571 25 N -0.629 5.629 26 C 0.478 3.522 27 H 0.216 0.784 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.279 0.721 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.221 0.779 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.352 10.441 -10.990 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.197 4.197 3 C 0.067 3.933 4 N -0.169 5.169 5 C -0.447 4.447 6 H 0.127 0.873 7 C -0.143 4.143 8 N -0.481 5.481 9 Si 0.695 3.305 10 H -0.196 1.196 11 H -0.205 1.205 12 H -0.188 1.188 13 C 0.230 3.770 14 O -0.419 6.419 15 C -0.014 4.014 16 N -0.136 5.136 17 N -0.128 5.128 18 H 0.308 0.692 19 C 0.098 3.902 20 C -0.405 4.405 21 C 0.351 3.649 22 O -0.411 6.411 23 N -0.394 5.394 24 C 0.138 3.862 25 N -0.368 5.368 26 C 0.224 3.776 27 H 0.233 0.767 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.132 0.868 32 H 0.152 0.848 33 H 0.237 0.763 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.348 9.592 -10.869 14.500 hybrid contribution 1.540 1.583 0.321 2.232 sum 1.887 11.175 -10.548 15.482 Atomic orbital electron populations 1.24838 0.95742 0.99433 1.00982 1.23516 0.94692 1.01042 1.00458 1.18964 0.84491 0.86747 1.03128 1.43628 1.56018 1.11492 1.05742 1.19052 1.38413 0.97274 0.89998 0.87287 1.25375 0.96071 0.98255 0.94615 1.69747 1.38930 1.40220 0.99165 0.87082 0.80810 0.83048 0.79554 1.19642 1.20526 1.18814 1.20246 0.83863 0.88947 0.83930 1.90670 1.48411 1.17380 1.85393 1.22214 1.05941 0.91244 0.81986 1.46191 1.05841 1.36872 1.24731 1.44028 1.10829 1.36206 1.21772 0.69178 1.23131 0.96385 0.82843 0.87845 1.22429 0.99001 1.12052 1.06969 1.18217 0.83350 0.79655 0.83659 1.90748 1.70668 1.53083 1.26557 1.69706 1.15789 1.34658 1.19244 1.24551 0.96656 0.81576 0.83453 1.67325 1.07691 1.24256 1.37545 1.18472 0.88993 0.83579 0.86573 0.76674 0.88027 0.89941 0.91067 0.86754 0.84755 0.76300 0.79160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 19.25 29.55 0.57 -2.20 16 2 C -0.20 -3.22 12.91 -37.12 -0.48 -3.70 16 3 C 0.19 3.21 4.27 -6.83 -0.03 3.18 16 4 N -0.45 -9.43 2.15 -117.94 -0.25 -9.68 16 5 C -0.32 -8.28 9.36 -14.93 -0.14 -8.42 16 6 H 0.11 3.29 7.91 -52.49 -0.42 2.87 16 7 C 0.06 1.62 5.26 -17.47 -0.09 1.53 16 8 N -0.85 -22.63 13.96 55.50 0.77 -21.85 16 9 Si 0.87 17.48 25.05 -169.99 -4.26 13.22 16 10 H -0.27 -5.00 6.69 56.52 0.38 -4.62 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 13 C 0.44 8.80 7.63 -10.99 -0.08 8.72 16 14 O -0.54 -13.15 16.30 5.55 0.09 -13.06 16 15 C 0.11 1.46 5.55 -5.20 -0.03 1.44 16 16 N -0.34 -4.57 3.16 -61.30 -0.19 -4.77 16 17 N -0.42 -3.59 7.14 30.93 0.22 -3.37 16 18 H 0.46 1.79 8.96 -182.55 -1.64 0.15 16 19 C 0.25 2.36 12.05 -16.40 -0.20 2.17 16 20 C -0.38 -5.98 6.37 -104.91 -0.67 -6.65 16 21 C 0.56 10.98 8.00 -12.96 -0.10 10.88 16 22 O -0.53 -11.50 18.03 4.82 0.09 -11.41 16 23 N -0.65 -12.43 10.50 -15.03 -0.16 -12.59 16 24 C 0.43 7.08 12.18 -92.31 -1.12 5.96 16 25 N -0.63 -11.03 10.39 -13.70 -0.14 -11.17 16 26 C 0.48 7.85 8.09 -155.78 -1.26 6.59 16 27 H 0.22 2.25 7.80 -54.10 -0.42 1.83 16 28 H 0.10 1.85 3.62 -51.93 -0.19 1.66 16 29 H 0.08 1.00 6.70 -51.93 -0.35 0.65 16 30 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.11 0.98 7.42 -51.93 -0.39 0.60 16 32 H 0.13 1.72 7.48 -51.93 -0.39 1.34 16 33 H 0.22 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.19 2.35 8.06 -52.48 -0.42 1.93 16 LS Contribution 312.81 15.07 4.71 4.71 Total: -1.00 -40.34 312.81 -6.54 -46.89 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -3.79 Total: 3.60 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: -3.64 Total: 19.48 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: 0.25 Total: -63.43 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.18 Total: -24.48 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -4.26 Total: 13.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -40.34 -6.54 -46.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798801051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.677 kcal (2) G-P(sol) polarization free energy of solvation -40.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds