Wall clock time and date at job start Tue Mar 31 2020 03:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47264 * 3.22957 * 3 2 1 5 5 C 1.37105 * 120.00319 * 263.73346 * 4 3 2 6 6 H 1.08000 * 120.00449 * 142.46400 * 5 4 3 7 7 C 1.38948 * 119.99638 * 322.46210 * 5 4 3 8 8 N 1.31413 * 120.00177 * 157.50665 * 7 5 4 9 9 Si 1.86808 * 120.00076 * 337.50961 * 7 5 4 10 10 H 1.48498 * 109.47041 * 95.70483 * 9 7 5 11 11 H 1.48499 * 109.46834 * 215.70353 * 9 7 5 12 12 H 1.48499 * 109.46988 * 335.70645 * 9 7 5 13 13 C 1.34782 * 120.00209 * 83.73080 * 4 3 2 14 14 O 1.21287 * 120.00161 * 179.97438 * 13 4 3 15 15 C 1.50693 * 119.99558 * 0.02562 * 13 4 3 16 16 N 1.46499 * 109.46993 * 179.97438 * 15 13 4 17 17 N 1.40160 * 126.01297 * 265.31116 * 16 15 13 18 18 H 0.97002 * 125.45435 * 359.97438 * 17 16 15 19 19 C 1.34332 * 109.08819 * 180.11793 * 17 16 15 20 20 C 1.38397 * 108.49998 * 359.61904 * 19 17 16 21 21 C 1.46807 * 134.77342 * 180.23833 * 20 19 17 22 22 O 1.22109 * 121.29841 * 0.02562 * 21 20 19 23 23 N 1.34410 * 117.40257 * 179.97438 * 21 20 19 24 24 C 1.31372 * 120.94575 * 359.97438 * 23 21 20 25 25 N 1.32033 * 123.74614 * 0.02562 * 24 23 21 26 26 C 1.32393 * 121.66532 * 0.02562 * 25 24 23 27 27 H 4.40643 * 5.51360 * 180.02562 * 4 1 2 28 28 H 1.08999 * 109.46939 * 243.23350 * 3 2 1 29 29 H 1.08997 * 109.47246 * 123.22934 * 3 2 1 30 30 H 0.97000 * 120.00122 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47532 * 59.99617 * 15 13 4 32 32 H 1.09000 * 109.47423 * 299.99626 * 15 13 4 33 33 H 1.08001 * 125.75111 * 179.87243 * 19 17 16 34 34 H 1.08006 * 118.12690 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3781 -0.0778 5 6 3.4860 -2.0467 1.0666 6 1 3.2666 -3.0994 1.1659 7 6 4.1242 -1.3696 2.0986 8 7 4.0715 -1.8401 3.3245 9 14 5.0570 0.2094 1.7435 10 1 4.1789 1.3753 2.0172 11 1 6.2591 0.2803 2.6125 12 1 5.4745 0.2279 0.3185 13 6 3.2398 -1.9895 -1.2744 14 8 3.6450 -3.1309 -1.3389 15 6 2.8544 -1.2545 -2.5322 16 7 3.0580 -2.1285 -3.6902 17 7 4.2016 -2.1714 -4.4994 18 1 4.9935 -1.6232 -4.3839 19 6 4.0242 -3.0910 -5.4624 20 6 2.7765 -3.6662 -5.2958 21 6 2.0152 -4.7063 -5.9986 22 8 2.4748 -5.2787 -6.9744 23 7 0.7931 -5.0047 -5.5253 24 6 0.3060 -4.3856 -4.4740 25 7 0.9538 -3.4451 -3.8113 26 6 2.1663 -3.0522 -4.1693 27 1 -1.0498 -0.0004 -0.0002 28 1 3.0091 0.4636 0.9175 29 1 3.0091 0.5640 -0.8596 30 1 4.5174 -1.3677 4.0449 31 1 3.4735 -0.3635 -2.6367 32 1 1.8055 -0.9635 -2.4762 33 1 4.7369 -3.3424 -6.2339 34 1 -0.6810 -4.6610 -4.1328 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798801051.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:17 Heat of formation + Delta-G solvation = 117.252859 kcal Electronic energy + Delta-G solvation = -23822.609711 eV Core-core repulsion = 20146.542867 eV Total energy + Delta-G solvation = -3676.066844 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.096 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -43.33019 -40.89329 -40.16762 -38.09393 -37.35508 -35.07968 -34.47819 -33.44071 -33.35332 -31.62010 -29.71055 -28.40817 -26.59930 -26.10899 -24.32979 -22.52958 -21.33715 -20.32427 -20.00513 -19.41256 -18.76340 -18.20058 -17.73034 -17.53647 -17.07179 -16.86036 -16.43914 -16.10846 -15.52025 -15.42911 -15.10005 -14.94263 -14.86652 -14.71801 -14.50617 -14.00984 -13.70067 -13.45855 -12.82870 -12.66727 -12.38906 -12.02968 -11.66619 -11.38205 -11.23414 -11.09423 -10.89849 -10.86784 -10.38377 -10.01349 -9.77492 -9.11837 -8.57449 -6.25556 -0.75164 -0.23336 0.66047 1.18461 1.28269 1.29796 1.43223 1.55310 1.78518 1.91746 2.09903 2.14446 2.60892 2.85258 3.03797 3.09802 3.21587 3.54427 3.55333 3.64116 3.66079 3.90443 3.97421 4.03789 4.14491 4.22750 4.37031 4.84243 5.07817 5.10031 5.39008 5.54948 5.90794 5.95499 6.30539 6.36874 6.72375 6.79556 7.05623 7.10261 7.59359 7.61182 8.59402 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.021912 B = 0.004412 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.541102 B = 6344.501813 C = 6732.945375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.242 4.242 3 C 0.185 3.815 4 N -0.458 5.458 5 C -0.340 4.340 6 H 0.035 0.965 7 C 0.011 3.989 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.238 1.238 11 H -0.289 1.289 12 H -0.229 1.229 13 C 0.442 3.558 14 O -0.598 6.598 15 C 0.122 3.878 16 N -0.350 5.350 17 N -0.381 5.381 18 H 0.486 0.514 19 C 0.303 3.697 20 C -0.425 4.425 21 C 0.547 3.453 22 O -0.580 6.580 23 N -0.686 5.686 24 C 0.425 3.575 25 N -0.649 5.649 26 C 0.452 3.548 27 H 0.249 0.751 28 H 0.089 0.911 29 H 0.143 0.857 30 H 0.282 0.718 31 H 0.181 0.819 32 H 0.145 0.855 33 H 0.278 0.722 34 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.908 14.947 -12.890 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.243 4.243 3 C 0.064 3.936 4 N -0.179 5.179 5 C -0.468 4.468 6 H 0.053 0.947 7 C -0.192 4.192 8 N -0.543 5.543 9 Si 0.766 3.234 10 H -0.162 1.162 11 H -0.216 1.216 12 H -0.151 1.151 13 C 0.231 3.769 14 O -0.481 6.481 15 C -0.001 4.001 16 N -0.143 5.143 17 N -0.089 5.089 18 H 0.341 0.659 19 C 0.145 3.855 20 C -0.444 4.444 21 C 0.336 3.664 22 O -0.463 6.463 23 N -0.433 5.433 24 C 0.134 3.866 25 N -0.388 5.388 26 C 0.200 3.800 27 H 0.265 0.735 28 H 0.107 0.893 29 H 0.160 0.840 30 H 0.092 0.908 31 H 0.198 0.802 32 H 0.163 0.837 33 H 0.293 0.707 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.902 14.206 -12.718 19.162 hybrid contribution 1.016 0.131 0.973 1.413 sum 2.918 14.338 -11.745 18.762 Atomic orbital electron populations 1.25733 0.96697 0.97184 0.99157 1.23725 0.95321 1.02982 1.02260 1.19213 0.84992 0.84262 1.05145 1.43668 1.56465 1.13093 1.04710 1.18502 1.40412 0.94975 0.92878 0.94728 1.26332 0.96153 1.03223 0.93465 1.69900 1.40477 1.43221 1.00677 0.85886 0.78516 0.77983 0.80981 1.16240 1.21621 1.15146 1.21327 0.81774 0.88266 0.85581 1.90645 1.50552 1.20195 1.86675 1.22244 1.07927 0.91601 0.78281 1.46224 1.06769 1.36301 1.25016 1.44303 1.09925 1.35081 1.19618 0.65912 1.23956 0.94495 0.79705 0.87309 1.22145 1.01694 1.12956 1.07582 1.18530 0.83876 0.80394 0.83574 1.90694 1.71668 1.55347 1.28616 1.69613 1.16904 1.36183 1.20580 1.25065 0.97594 0.81174 0.82782 1.67318 1.08873 1.24667 1.37983 1.18704 0.89347 0.84537 0.87457 0.73477 0.89308 0.83970 0.90789 0.80222 0.83737 0.70665 0.76372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.41 19.25 74.32 1.43 -2.98 16 2 C -0.24 -7.29 12.91 31.13 0.40 -6.88 16 3 C 0.18 5.59 4.27 84.57 0.36 5.95 16 4 N -0.46 -18.82 2.15 -645.43 -1.39 -20.21 16 5 C -0.34 -18.36 9.36 84.04 0.79 -17.58 16 6 H 0.03 2.31 7.91 -2.91 -0.02 2.29 16 7 C 0.01 0.59 5.26 84.93 0.45 1.03 16 8 N -0.91 -50.95 13.96 21.66 0.30 -50.65 16 9 Si 0.95 34.52 25.05 68.60 1.72 36.24 16 10 H -0.24 -7.45 6.69 99.48 0.67 -6.79 16 11 H -0.29 -10.97 7.11 99.48 0.71 -10.26 16 12 H -0.23 -7.00 7.11 99.48 0.71 -6.29 16 13 C 0.44 16.82 7.63 87.65 0.67 17.49 16 14 O -0.60 -29.57 16.30 -3.05 -0.05 -29.62 16 15 C 0.12 2.70 5.55 85.63 0.47 3.17 16 16 N -0.35 -8.02 3.16 -347.86 -1.10 -9.12 16 17 N -0.38 -4.37 7.14 -56.05 -0.40 -4.77 16 18 H 0.49 0.28 8.96 -213.28 -1.91 -1.63 16 19 C 0.30 4.32 12.05 84.35 1.02 5.33 16 20 C -0.43 -12.58 6.37 -20.05 -0.13 -12.71 16 21 C 0.55 21.75 8.00 86.54 0.69 22.44 16 22 O -0.58 -25.82 18.03 -5.67 -0.10 -25.92 16 23 N -0.69 -27.31 10.50 -319.71 -3.36 -30.67 16 24 C 0.42 14.41 12.18 180.94 2.20 16.61 16 25 N -0.65 -22.76 10.39 -197.26 -2.05 -24.81 16 26 C 0.45 14.17 8.09 134.46 1.09 15.26 16 27 H 0.25 4.29 7.80 -4.43 -0.03 4.25 16 28 H 0.09 2.90 3.62 -2.39 -0.01 2.90 16 29 H 0.14 2.46 6.70 -2.39 -0.02 2.45 16 30 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 31 H 0.18 1.61 7.42 -2.39 -0.02 1.60 16 32 H 0.15 3.07 7.48 -2.39 -0.02 3.05 16 33 H 0.28 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.22 5.56 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -103.19 312.81 2.25 -100.95 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -0.77 Total: 11.44 kcal Atomic # 6 Polarization: 37.70 SS G_CDS: 9.44 Total: 47.14 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -8.00 Total: -140.22 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -0.15 Total: -55.54 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 1.72 Total: 36.24 kcal Total: -103.19 2.25 -100.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798801051.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.198 kcal (2) G-P(sol) polarization free energy of solvation -103.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds