Wall clock time and date at job start Tue Mar 31 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85462 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.14546 * 0.02562 * 5 4 3 7 7 C 1.38322 * 120.28253 * 0.02562 * 6 5 4 8 8 C 1.37992 * 120.14666 * 359.68983 * 7 6 5 9 9 C 1.50703 * 120.07882 * 180.27907 * 8 7 6 10 10 C 1.50696 * 109.47301 * 265.30317 * 9 8 7 11 11 O 1.20821 * 120.00054 * 0.02562 * 10 9 8 12 12 O 1.34230 * 119.99785 * 179.97438 * 10 9 8 13 13 C 1.45201 * 117.00045 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47111 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00145 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99997 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00209 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.47361 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99511 * 359.97438 * 18 17 16 20 20 C 1.37867 * 119.99986 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00040 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00200 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47267 * 90.00135 * 22 20 18 24 24 H 1.48504 * 109.46966 * 210.00123 * 22 20 18 25 25 H 1.48498 * 109.47228 * 329.99937 * 22 20 18 26 26 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 27 27 H 1.07994 * 120.07089 * 359.95316 * 4 3 2 28 28 H 1.08005 * 119.93031 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.86212 * 179.97438 * 6 5 4 30 30 H 1.08005 * 119.93099 * 179.97438 * 7 6 5 31 31 H 1.08994 * 109.46589 * 25.30514 * 9 8 7 32 32 H 1.08997 * 109.46615 * 145.29847 * 9 8 7 33 33 H 1.09004 * 109.46955 * 300.00641 * 13 12 10 34 34 H 1.09003 * 109.46892 * 59.99949 * 13 12 10 35 35 H 0.97004 * 119.99910 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.47321 * 299.99853 * 17 16 14 37 37 H 1.09003 * 109.47485 * 59.99749 * 17 16 14 38 38 H 0.97003 * 120.00031 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0632 -1.1984 6 6 5.3751 0.0024 0.0001 7 6 4.6864 -0.0600 1.1981 8 6 3.3066 -0.0556 1.2053 9 6 2.5579 -0.1173 2.5117 10 6 2.2024 -1.5490 2.8199 11 8 2.5245 -2.4290 2.0573 12 8 1.5290 -1.8466 3.9423 13 6 1.2201 -3.2463 4.1742 14 6 0.4667 -3.3861 5.4718 15 8 0.2144 -2.4029 6.1355 16 7 0.0732 -4.6038 5.8947 17 6 -0.6587 -4.7399 7.1564 18 6 -0.9783 -6.1928 7.3976 19 1 -0.6676 -6.9399 6.6824 20 6 -1.6682 -6.5679 8.5308 21 7 -1.9475 -7.8357 8.7412 22 14 -2.2062 -5.2754 9.7676 23 1 -3.5594 -4.7800 9.4089 24 1 -2.2423 -5.8747 11.1258 25 1 -1.2445 -4.1440 9.7512 26 1 -1.0500 0.0005 0.0001 27 1 2.7702 0.1090 -2.1414 28 1 5.2297 0.1113 -2.1304 29 1 6.4551 0.0029 0.0002 30 1 5.2299 -0.1077 2.1302 31 1 3.1852 0.2811 3.3091 32 1 1.6462 0.4753 2.4363 33 1 0.6069 -3.6235 3.3558 34 1 2.1463 -3.8186 4.2278 35 1 0.2753 -5.3902 5.3640 36 1 -0.0456 -4.3624 7.9747 37 1 -1.5850 -4.1678 7.1026 38 1 -2.4332 -8.0996 9.5383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811258066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:30 Heat of formation + Delta-G solvation = -43.851368 kcal Electronic energy + Delta-G solvation = -22439.677483 eV Core-core repulsion = 18827.872228 eV Total energy + Delta-G solvation = -3611.805255 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.84255 -39.63729 -38.78830 -36.42457 -34.38808 -34.28091 -33.15251 -32.44349 -30.57535 -29.76620 -28.35222 -26.88669 -23.68474 -22.84174 -22.04844 -20.86287 -20.13524 -19.08989 -17.91171 -17.59139 -16.89332 -16.70120 -16.36651 -15.77763 -15.63198 -15.53580 -15.02382 -14.73437 -14.11954 -14.05023 -13.63145 -13.41076 -13.35680 -13.03156 -12.50316 -12.47938 -12.36644 -12.04960 -11.86266 -11.62831 -11.46227 -11.08392 -10.84468 -10.74263 -10.72931 -10.68355 -10.01379 -9.55717 -9.37278 -9.22013 -8.83099 -8.81833 -8.28515 -6.25289 -4.28470 0.57771 0.94665 2.07953 2.38569 2.45829 2.73757 3.01377 3.24383 3.31243 3.39039 3.63371 3.91363 3.96354 4.20217 4.29827 4.44295 4.66790 4.74645 4.82860 5.04221 5.08583 5.09281 5.09410 5.16288 5.21576 5.23904 5.32380 5.60626 5.75309 6.03749 6.10093 6.13524 6.27440 6.55596 6.71645 6.99364 7.07926 7.24313 7.30302 7.61577 8.03565 8.39879 8.66600 8.78451 9.33692 10.86454 Molecular weight = 301.11amu Principal moments of inertia in cm(-1) A = 0.032800 B = 0.002378 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.455243 B =11770.419621 C =11917.652444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.156 4.156 3 C 0.029 3.971 4 C -0.097 4.097 5 C -0.115 4.115 6 C -0.110 4.110 7 C -0.102 4.102 8 C -0.054 4.054 9 C -0.075 4.075 10 C 0.463 3.537 11 O -0.499 6.499 12 O -0.330 6.330 13 C 0.049 3.951 14 C 0.502 3.498 15 O -0.537 6.537 16 N -0.699 5.699 17 C 0.222 3.778 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.078 3.922 21 N -0.891 5.891 22 Si 0.877 3.123 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.260 1.260 26 H 0.226 0.774 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.399 0.601 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.338 17.356 -19.466 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.156 4.156 3 C 0.029 3.971 4 C -0.115 4.115 5 C -0.133 4.133 6 C -0.128 4.128 7 C -0.120 4.120 8 C -0.055 4.055 9 C -0.113 4.113 10 C 0.305 3.695 11 O -0.387 6.387 12 O -0.245 6.245 13 C -0.028 4.028 14 C 0.285 3.715 15 O -0.414 6.414 16 N -0.350 5.350 17 C 0.100 3.900 18 C -0.584 4.584 19 H 0.099 0.901 20 C -0.126 4.126 21 N -0.528 5.528 22 Si 0.703 3.297 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.185 1.185 26 H 0.242 0.758 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.233 0.767 36 H 0.046 0.954 37 H 0.041 0.959 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.141 17.621 -19.035 28.639 hybrid contribution -0.460 -0.167 0.350 0.601 sum 11.681 17.454 -18.685 28.110 Atomic orbital electron populations 1.24989 0.95856 0.98715 0.98695 1.19956 0.92027 1.01803 1.01830 1.15788 0.86562 1.01569 0.93189 1.21170 0.94259 0.99215 0.96813 1.21108 0.93833 0.99964 0.98434 1.21238 1.00223 0.99137 0.92200 1.20975 0.92756 0.99378 0.98893 1.19324 0.93548 1.00207 0.92379 1.20293 1.03177 0.91303 0.96508 1.23500 0.74928 0.92247 0.78799 1.90692 1.50488 1.49414 1.48081 1.86547 1.67906 1.28863 1.41190 1.22816 1.01645 0.80333 0.97998 1.19926 0.80677 0.84593 0.86264 1.90699 1.56220 1.37583 1.56919 1.46070 1.56443 1.06980 1.25496 1.19557 0.91462 0.98107 0.80829 1.21064 1.38246 0.90466 1.08604 0.90128 1.24792 0.94792 0.95485 0.97533 1.69879 1.39570 1.15531 1.27776 0.86812 0.80033 0.82110 0.80710 1.19789 1.20832 1.18467 0.75767 0.85460 0.85389 0.85428 0.85249 0.86160 0.86485 0.88376 0.88309 0.76699 0.95417 0.95875 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 19.25 29.55 0.57 -1.01 16 2 C -0.16 -1.73 11.79 -38.84 -0.46 -2.19 16 3 C 0.03 0.31 5.72 -107.00 -0.61 -0.30 16 4 C -0.10 -0.86 9.75 -39.20 -0.38 -1.25 16 5 C -0.12 -0.86 10.03 -39.64 -0.40 -1.26 16 6 C -0.11 -0.82 10.04 -39.50 -0.40 -1.21 16 7 C -0.10 -0.88 9.67 -39.64 -0.38 -1.26 16 8 C -0.05 -0.56 4.41 -104.23 -0.46 -1.02 16 9 C -0.08 -0.75 5.46 -29.04 -0.16 -0.91 16 10 C 0.46 6.25 7.95 36.00 0.29 6.54 16 11 O -0.50 -7.78 15.78 -18.75 -0.30 -8.08 16 12 O -0.33 -5.06 9.75 -45.90 -0.45 -5.51 16 13 C 0.05 0.74 5.94 36.00 0.21 0.95 16 14 C 0.50 9.61 7.91 -10.99 -0.09 9.52 16 15 O -0.54 -12.36 16.50 -14.11 -0.23 -12.60 16 16 N -0.70 -13.91 5.55 -61.47 -0.34 -14.25 16 17 C 0.22 5.38 4.50 -5.19 -0.02 5.35 16 18 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 19 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 20 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 21 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 22 Si 0.88 21.17 27.47 -169.99 -4.67 16.51 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 26 H 0.23 1.35 7.80 -54.09 -0.42 0.92 16 27 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 28 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 29 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 30 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 31 H 0.12 0.89 8.05 -51.93 -0.42 0.47 16 32 H 0.12 1.08 7.28 -51.93 -0.38 0.70 16 33 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 34 H 0.10 1.29 8.13 -51.93 -0.42 0.86 16 35 H 0.40 6.86 8.32 -40.82 -0.34 6.52 16 36 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 37 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 38 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -35.17 348.37 -7.13 -42.30 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -4.44 Total: 2.88 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.73 Total: -1.06 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.43 Total: -39.68 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.98 Total: -26.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.17 -7.13 -42.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811258066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.556 kcal (2) G-P(sol) polarization free energy of solvation -35.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds