Wall clock time and date at job start Tue Mar 31 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39556 * 120.14159 * 92.91655 * 3 2 1 5 5 C 1.37946 * 119.85462 * 179.97438 * 4 3 2 6 6 C 1.38371 * 120.14546 * 0.02562 * 5 4 3 7 7 C 1.38322 * 120.28253 * 0.02562 * 6 5 4 8 8 C 1.37992 * 120.14666 * 359.68983 * 7 6 5 9 9 C 1.50703 * 120.07882 * 180.27907 * 8 7 6 10 10 C 1.50696 * 109.47301 * 265.30317 * 9 8 7 11 11 O 1.20821 * 120.00054 * 0.02562 * 10 9 8 12 12 O 1.34230 * 119.99785 * 179.97438 * 10 9 8 13 13 C 1.45201 * 117.00045 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47111 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00145 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99997 * 180.02562 * 14 13 12 17 17 C 1.46497 * 120.00209 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.47361 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99511 * 359.97438 * 18 17 16 20 20 C 1.37867 * 119.99986 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00040 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00200 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47267 * 90.00135 * 22 20 18 24 24 H 1.48504 * 109.46966 * 210.00123 * 22 20 18 25 25 H 1.48498 * 109.47228 * 329.99937 * 22 20 18 26 26 H 4.52083 * 14.01991 * 0.02562 * 4 2 1 27 27 H 1.07994 * 120.07089 * 359.95316 * 4 3 2 28 28 H 1.08005 * 119.93031 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.86212 * 179.97438 * 6 5 4 30 30 H 1.08005 * 119.93099 * 179.97438 * 7 6 5 31 31 H 1.08994 * 109.46589 * 25.30514 * 9 8 7 32 32 H 1.08997 * 109.46615 * 145.29847 * 9 8 7 33 33 H 1.09004 * 109.46955 * 300.00641 * 13 12 10 34 34 H 1.09003 * 109.46892 * 59.99949 * 13 12 10 35 35 H 0.97004 * 119.99910 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.47321 * 299.99853 * 17 16 14 37 37 H 1.09003 * 109.47485 * 59.99749 * 17 16 14 38 38 H 0.97003 * 120.00031 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3067 0.0624 -1.2053 5 6 4.6862 0.0632 -1.1984 6 6 5.3751 0.0024 0.0001 7 6 4.6864 -0.0600 1.1981 8 6 3.3066 -0.0556 1.2053 9 6 2.5579 -0.1173 2.5117 10 6 2.2024 -1.5490 2.8199 11 8 2.5245 -2.4290 2.0573 12 8 1.5290 -1.8466 3.9423 13 6 1.2201 -3.2463 4.1742 14 6 0.4667 -3.3861 5.4718 15 8 0.2144 -2.4029 6.1355 16 7 0.0732 -4.6038 5.8947 17 6 -0.6587 -4.7399 7.1564 18 6 -0.9783 -6.1928 7.3976 19 1 -0.6676 -6.9399 6.6824 20 6 -1.6682 -6.5679 8.5308 21 7 -1.9475 -7.8357 8.7412 22 14 -2.2062 -5.2754 9.7676 23 1 -3.5594 -4.7800 9.4089 24 1 -2.2423 -5.8747 11.1258 25 1 -1.2445 -4.1440 9.7512 26 1 -1.0500 0.0005 0.0001 27 1 2.7702 0.1090 -2.1414 28 1 5.2297 0.1113 -2.1304 29 1 6.4551 0.0029 0.0002 30 1 5.2299 -0.1077 2.1302 31 1 3.1852 0.2811 3.3091 32 1 1.6462 0.4753 2.4363 33 1 0.6069 -3.6235 3.3558 34 1 2.1463 -3.8186 4.2278 35 1 0.2753 -5.3902 5.3640 36 1 -0.0456 -4.3624 7.9747 37 1 -1.5850 -4.1678 7.1026 38 1 -2.4332 -8.0996 9.5383 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811258066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:29 Heat of formation + Delta-G solvation = -65.436757 kcal Electronic energy + Delta-G solvation = -22440.613496 eV Core-core repulsion = 18827.872228 eV Total energy + Delta-G solvation = -3612.741268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.115 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.89377 -40.64932 -40.05490 -37.58305 -36.21785 -34.95411 -34.47546 -33.87069 -31.30302 -31.14562 -29.53397 -28.25927 -24.40943 -24.18894 -23.32998 -21.81379 -21.72151 -19.76616 -19.36349 -18.91466 -18.15755 -17.98788 -17.22876 -17.09023 -16.74762 -16.65588 -16.11933 -16.05152 -15.82959 -14.86783 -14.72379 -14.63696 -14.38626 -14.23824 -14.05880 -13.86934 -13.57596 -13.18081 -13.09239 -12.71326 -12.47894 -12.22245 -12.14696 -11.94557 -11.93377 -11.77499 -11.67530 -11.43048 -10.99840 -10.93031 -10.06130 -9.85448 -9.46713 -8.40592 -6.48443 -0.08006 0.31407 1.05193 1.27914 1.33693 1.37135 1.47307 1.49577 1.72077 2.05182 2.27841 2.46709 2.94685 3.00788 3.31440 3.50236 3.61246 3.81971 3.82515 4.00980 4.04984 4.13102 4.26563 4.42241 4.51778 4.62128 4.70095 4.73668 4.99274 4.99558 5.15590 5.20532 5.24766 5.38178 5.45075 5.49166 5.52255 5.97963 6.04643 6.50379 6.52459 6.55695 6.70481 7.09973 7.25216 8.73942 Molecular weight = 301.11amu Principal moments of inertia in cm(-1) A = 0.032800 B = 0.002378 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.455243 B =11770.419621 C =11917.652444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.191 4.191 3 C 0.002 3.998 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.112 4.112 7 C -0.111 4.111 8 C -0.073 4.073 9 C -0.071 4.071 10 C 0.466 3.534 11 O -0.523 6.523 12 O -0.345 6.345 13 C 0.058 3.942 14 C 0.506 3.494 15 O -0.576 6.576 16 N -0.697 5.697 17 C 0.232 3.768 18 C -0.548 4.548 19 H 0.061 0.939 20 C 0.026 3.974 21 N -0.930 5.930 22 Si 0.938 3.062 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.258 1.258 26 H 0.252 0.748 27 H 0.136 0.864 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.413 0.587 36 H 0.018 0.982 37 H 0.017 0.983 38 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.412 18.693 -20.196 30.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.191 4.191 3 C 0.002 3.998 4 C -0.128 4.128 5 C -0.132 4.132 6 C -0.129 4.129 7 C -0.128 4.128 8 C -0.074 4.074 9 C -0.108 4.108 10 C 0.310 3.690 11 O -0.411 6.411 12 O -0.261 6.261 13 C -0.019 4.019 14 C 0.292 3.708 15 O -0.457 6.457 16 N -0.348 5.348 17 C 0.109 3.891 18 C -0.586 4.586 19 H 0.079 0.921 20 C -0.175 4.175 21 N -0.569 5.569 22 Si 0.761 3.239 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.182 1.182 26 H 0.269 0.731 27 H 0.154 0.846 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.249 0.751 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.230 18.951 -19.798 30.433 hybrid contribution -0.741 -0.602 0.467 1.062 sum 12.490 18.349 -19.331 29.434 Atomic orbital electron populations 1.25755 0.96673 0.97870 0.97626 1.20482 0.92878 1.02791 1.02936 1.16106 0.86792 1.02760 0.94187 1.21421 0.95203 0.99446 0.96732 1.21478 0.93370 0.98618 0.99772 1.21627 1.01675 0.97900 0.91727 1.21294 0.92335 0.98936 1.00281 1.19457 0.94340 1.01435 0.92126 1.20416 1.03943 0.88952 0.97514 1.24142 0.73813 0.93356 0.77664 1.90676 1.51459 1.50388 1.48576 1.86551 1.68466 1.28809 1.42282 1.22706 1.02390 0.81058 0.95753 1.20527 0.79803 0.83352 0.87141 1.90677 1.57734 1.38749 1.58490 1.45869 1.56242 1.08243 1.24487 1.19183 0.91459 0.95919 0.82541 1.21265 1.37699 0.91536 1.08133 0.92117 1.25610 0.94982 0.97324 0.99546 1.69982 1.40744 1.17391 1.28786 0.85848 0.79810 0.79561 0.78633 1.18946 1.19888 1.18231 0.73130 0.84626 0.82733 0.82721 0.83527 0.83566 0.86056 0.86393 0.85993 0.75124 0.96397 0.96538 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 19.25 74.32 1.43 -1.56 16 2 C -0.19 -4.21 11.79 30.02 0.35 -3.86 16 3 C 0.00 0.03 5.72 -21.40 -0.12 -0.09 16 4 C -0.11 -1.88 9.75 22.52 0.22 -1.66 16 5 C -0.11 -1.48 10.03 22.23 0.22 -1.26 16 6 C -0.11 -1.39 10.04 22.32 0.22 -1.17 16 7 C -0.11 -1.70 9.67 22.23 0.21 -1.49 16 8 C -0.07 -1.43 4.41 -19.61 -0.09 -1.52 16 9 C -0.07 -1.34 5.46 29.10 0.16 -1.18 16 10 C 0.47 12.02 7.95 71.23 0.57 12.59 16 11 O -0.52 -15.71 15.78 21.98 0.35 -15.36 16 12 O -0.35 -10.14 9.75 -45.07 -0.44 -10.58 16 13 C 0.06 1.62 5.94 71.23 0.42 2.05 16 14 C 0.51 18.84 7.91 87.66 0.69 19.53 16 15 O -0.58 -26.23 16.50 15.76 0.26 -25.97 16 16 N -0.70 -27.17 5.55 -466.78 -2.59 -29.76 16 17 C 0.23 11.15 4.50 85.64 0.39 11.54 16 18 C -0.55 -29.80 9.83 25.60 0.25 -29.55 16 19 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 20 C 0.03 1.45 5.47 84.65 0.46 1.91 16 21 N -0.93 -55.11 13.96 21.44 0.30 -54.81 16 22 Si 0.94 43.39 27.47 68.60 1.88 45.28 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 25 H -0.26 -11.77 6.54 99.48 0.65 -11.12 16 26 H 0.25 2.66 7.80 -4.42 -0.03 2.62 16 27 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 28 H 0.16 1.06 8.06 -2.91 -0.02 1.04 16 29 H 0.16 1.02 8.06 -2.91 -0.02 0.99 16 30 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.15 1.88 8.05 -2.39 -0.02 1.87 16 32 H 0.12 2.15 7.28 -2.39 -0.02 2.14 16 33 H 0.12 2.88 8.13 -2.38 -0.02 2.86 16 34 H 0.12 2.90 8.13 -2.39 -0.02 2.88 16 35 H 0.41 13.82 8.32 -92.71 -0.77 13.04 16 36 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16 37 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 38 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -75.77 348.37 5.42 -70.35 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 0.26 Total: 16.59 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.40 Total: 4.27 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -2.29 Total: -84.58 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: 0.17 Total: -51.92 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.28 kcal Total: -75.77 5.42 -70.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811258066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.916 kcal (2) G-P(sol) polarization free energy of solvation -75.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds