Wall clock time and date at job start Tue Mar 31 2020 03:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48506 * 109.47297 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47261 * 60.00248 * 3 2 1 6 6 H 1.48500 * 109.47454 * 300.00241 * 3 2 1 7 7 C 1.37875 * 120.00380 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00559 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99838 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47111 * 180.02562 * 9 7 2 11 11 O 1.42103 * 108.57712 * 294.48452 * 10 9 7 12 12 O 1.42100 * 108.57971 * 65.51085 * 10 9 7 13 13 C 1.81404 * 101.91908 * 179.97438 * 10 9 7 14 14 H 1.08992 * 109.30287 * 299.99781 * 13 10 9 15 15 C 1.53186 * 109.30270 * 180.40327 * 13 10 9 16 16 C 1.52468 * 108.46375 * 286.71169 * 15 13 10 17 17 H 1.08998 * 109.31866 * 51.87483 * 16 15 13 18 18 C 1.52754 * 110.97538 * 172.66665 * 16 15 13 19 19 C 1.53195 * 108.87515 * 180.53538 * 18 16 15 20 20 C 1.52893 * 109.96002 * 300.57265 * 19 18 16 21 21 C 1.53331 * 109.27316 * 59.36544 * 20 19 18 22 22 C 1.52709 * 108.82460 * 299.39777 * 21 20 19 23 23 H 1.09003 * 108.75960 * 304.05414 * 22 21 20 24 24 N 1.45384 * 111.69326 * 184.00258 * 22 21 20 25 25 C 1.33626 * 123.19155 * 216.73461 * 24 22 21 26 26 O 1.21280 * 118.04783 * 183.81239 * 25 24 22 27 27 H 0.97001 * 119.99667 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46894 * 300.00433 * 9 7 2 29 29 H 1.08998 * 109.47107 * 60.00164 * 9 7 2 30 30 H 1.09003 * 109.71343 * 46.26068 * 15 13 10 31 31 H 1.08996 * 109.71453 * 166.90092 * 15 13 10 32 32 H 1.09003 * 109.57280 * 300.35431 * 18 16 15 33 33 H 1.09006 * 109.57541 * 60.71885 * 18 16 15 34 34 H 1.09002 * 109.39144 * 60.72093 * 19 18 16 35 35 H 1.08999 * 109.39518 * 180.42240 * 19 18 16 36 36 H 1.08997 * 109.39234 * 179.06830 * 20 19 18 37 37 H 1.09003 * 109.38958 * 298.86744 * 20 19 18 38 38 H 1.08990 * 108.93442 * 179.97438 * 21 20 19 39 39 H 1.09005 * 110.25950 * 59.59350 * 21 20 19 40 40 H 0.96999 * 118.40040 * 36.75323 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 1.2125 6 1 1.8903 2.3965 -1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 8 3.1485 -3.8592 -1.2264 12 8 3.1486 -3.8592 1.2252 13 6 1.3244 -5.3161 0.0003 14 1 0.6974 -5.2880 0.8913 15 6 2.1620 -6.5986 0.0105 16 6 2.7814 -6.7819 -1.3705 17 1 3.2957 -5.8653 -1.6596 18 6 3.7729 -7.9439 -1.3753 19 6 4.3746 -8.0763 -2.7779 20 6 3.2659 -8.3307 -3.7996 21 6 2.2711 -7.1644 -3.7679 22 6 1.6620 -7.0741 -2.3705 23 1 1.2119 -8.0351 -2.1215 24 7 0.6379 -6.0448 -2.2962 25 6 0.4532 -5.2730 -1.2211 26 8 -0.4739 -4.4912 -1.2328 27 1 -0.4850 -0.8401 0.0004 28 1 0.6247 -2.5570 0.8897 29 1 0.6242 -2.5567 -0.8903 30 1 2.9531 -6.5152 0.7557 31 1 1.5251 -7.4519 0.2436 32 1 4.5669 -7.7495 -0.6543 33 1 3.2556 -8.8664 -1.1115 34 1 4.8992 -7.1560 -3.0350 35 1 5.0783 -8.9085 -2.7929 36 1 3.7021 -8.4068 -4.7956 37 1 2.7561 -9.2628 -3.5557 38 1 1.4839 -7.3511 -4.4982 39 1 2.7781 -6.2293 -4.0063 40 1 0.0605 -5.9121 -3.0642 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905268273.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:35 Heat of formation + Delta-G solvation = -133.764413 kcal Electronic energy + Delta-G solvation = -24152.308200 eV Core-core repulsion = 20672.047974 eV Total energy + Delta-G solvation = -3480.260226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.84947 -38.40801 -36.27791 -35.40576 -34.73681 -33.91573 -33.58360 -30.20250 -29.36770 -28.51351 -24.74871 -23.14115 -22.86690 -22.51627 -20.35470 -19.95633 -18.16439 -17.23640 -17.11983 -16.73673 -16.38702 -15.44342 -15.03382 -14.91369 -14.70827 -14.50788 -14.02695 -13.78385 -13.75463 -13.39869 -13.05512 -12.81727 -12.64845 -12.24361 -12.11083 -11.91646 -11.80765 -11.56164 -11.54571 -11.33835 -11.08367 -10.77994 -10.70051 -10.65913 -10.45020 -10.27433 -10.15104 -9.72565 -9.41929 -9.08863 -8.96259 -8.54452 -6.58731 -4.35482 0.60383 2.64775 3.08499 3.40309 3.44357 3.58035 3.61048 3.98318 4.13322 4.31254 4.37129 4.41574 4.54271 4.77375 4.84613 4.88721 4.94409 5.06419 5.16021 5.17832 5.23422 5.23808 5.36404 5.51251 5.54980 5.63511 5.66447 5.85380 5.89319 5.93554 5.99140 6.04951 6.29249 6.49025 6.62440 6.76194 7.21861 7.52651 8.12135 8.17958 8.58747 9.40680 10.84274 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.004882 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.939397 B = 5733.713133 C = 5955.291473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.035 3.965 3 Si 1.079 2.921 4 H -0.283 1.283 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.610 4.610 8 H 0.065 0.935 9 C -0.412 4.412 10 S 2.411 3.589 11 O -0.940 6.940 12 O -0.942 6.942 13 C -0.621 4.621 14 H 0.163 0.837 15 C -0.098 4.098 16 C -0.137 4.137 17 H 0.114 0.886 18 C -0.106 4.106 19 C -0.125 4.125 20 C -0.113 4.113 21 C -0.133 4.133 22 C 0.147 3.853 23 H 0.072 0.928 24 N -0.705 5.705 25 C 0.544 3.456 26 O -0.528 6.528 27 H 0.276 0.724 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.705 -19.182 -5.409 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.173 4.173 3 Si 0.905 3.095 4 H -0.209 1.209 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.649 4.649 8 H 0.084 0.916 9 C -0.548 4.548 10 S 2.593 3.407 11 O -0.938 6.938 12 O -0.940 6.940 13 C -0.725 4.725 14 H 0.180 0.820 15 C -0.136 4.136 16 C -0.156 4.156 17 H 0.132 0.868 18 C -0.144 4.144 19 C -0.163 4.163 20 C -0.151 4.151 21 C -0.171 4.171 22 C 0.042 3.958 23 H 0.090 0.910 24 N -0.358 5.358 25 C 0.328 3.672 26 O -0.404 6.404 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.062 -17.289 -5.211 18.754 hybrid contribution -1.034 -1.972 -0.146 2.231 sum 4.028 -19.261 -5.356 20.394 Atomic orbital electron populations 1.70680 1.06835 1.31441 1.43607 1.25969 0.96365 1.02561 0.92431 0.83423 0.74715 0.73955 0.77416 1.20862 1.20722 1.20755 1.21306 0.94059 0.89446 1.60060 0.91636 1.27581 1.10117 1.10316 1.06773 1.08788 0.79143 0.77524 0.75282 1.93435 1.69638 1.85155 1.45533 1.93494 1.69335 1.85484 1.45640 1.30679 1.15262 1.21694 1.04839 0.81955 1.21328 0.98948 0.94943 0.98385 1.21879 0.96585 1.02969 0.94178 0.86776 1.21475 0.98056 0.97155 0.97743 1.21615 0.97832 1.02439 0.94402 1.21510 0.96425 0.97615 0.99574 1.21923 0.99326 1.00463 0.95358 1.20821 0.88026 0.90507 0.96463 0.91031 1.45293 1.36045 1.37054 1.17413 1.18737 0.84653 0.80599 0.83210 1.90860 1.30492 1.37500 1.81591 0.91308 0.90469 0.88897 0.89260 0.89527 0.90837 0.91496 0.91192 0.91616 0.91362 0.91716 0.91311 0.90068 0.75835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.26 13.65 55.43 0.76 -26.50 16 2 C 0.04 1.02 5.46 -17.82 -0.10 0.93 16 3 Si 1.08 25.48 29.90 -169.99 -5.08 20.40 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.61 -17.79 9.13 -34.44 -0.31 -18.11 16 8 H 0.07 1.89 7.71 -52.49 -0.40 1.49 16 9 C -0.41 -10.63 4.21 36.01 0.15 -10.48 16 10 S 2.41 51.93 4.01 -107.50 -0.43 51.50 16 11 O -0.94 -21.39 15.51 -57.83 -0.90 -22.29 16 12 O -0.94 -22.08 18.04 -57.83 -1.04 -23.12 16 13 C -0.62 -10.22 2.87 -28.08 -0.08 -10.30 16 14 H 0.16 2.36 8.14 -51.92 -0.42 1.94 16 15 C -0.10 -1.26 4.80 -26.91 -0.13 -1.39 16 16 C -0.14 -1.70 1.87 -91.06 -0.17 -1.87 16 17 H 0.11 1.75 5.32 -51.93 -0.28 1.47 16 18 C -0.11 -0.98 5.33 -26.76 -0.14 -1.12 16 19 C -0.13 -1.04 5.88 -26.69 -0.16 -1.20 16 20 C -0.11 -0.85 5.94 -26.61 -0.16 -1.01 16 21 C -0.13 -1.23 5.55 -26.71 -0.15 -1.38 16 22 C 0.15 1.61 2.74 -68.72 -0.19 1.43 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 N -0.71 -9.67 5.23 -55.19 -0.29 -9.96 16 25 C 0.54 9.47 6.69 -11.79 -0.08 9.39 16 26 O -0.53 -11.10 15.64 5.56 0.09 -11.01 16 27 H 0.28 8.43 7.22 -40.82 -0.29 8.13 16 28 H 0.08 1.95 8.01 -51.92 -0.42 1.53 16 29 H 0.09 2.47 6.33 -51.93 -0.33 2.14 16 30 H 0.09 1.09 8.02 -51.93 -0.42 0.67 16 31 H 0.09 0.89 8.12 -51.93 -0.42 0.47 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.40 4.91 8.72 -40.82 -0.36 4.56 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -35.88 324.66 -9.46 -45.34 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.94 Total: 5.86 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: -1.51 Total: -35.11 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.47 Total: -36.46 kcal Atomic # 8 Polarization: -54.57 SS G_CDS: -1.85 Total: -56.42 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Atomic # 16 Polarization: 51.93 SS G_CDS: -0.43 Total: 51.50 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.88 -9.46 -45.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905268273.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.425 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds