Wall clock time and date at job start Tue Mar 31 2020 04:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00258 * 2 1 4 4 C 1.50698 * 109.47172 * 270.00043 * 3 2 1 5 5 H 1.07999 * 120.00336 * 0.02562 * 4 3 2 6 6 C 1.37886 * 120.00002 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99921 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47084 * 90.00122 * 8 6 4 10 10 H 1.48493 * 109.47154 * 210.00538 * 8 6 4 11 11 H 1.48499 * 109.47007 * 330.00551 * 8 6 4 12 12 C 1.34776 * 120.00134 * 180.02562 * 2 1 3 13 13 O 1.21581 * 120.00179 * 182.32495 * 12 2 1 14 14 C 1.47644 * 119.99945 * 2.32801 * 12 2 1 15 15 N 1.31085 * 120.39052 * 352.79672 * 14 12 2 16 16 N 1.27934 * 124.25767 * 180.02562 * 15 14 12 17 17 C 1.46494 * 118.24423 * 180.02562 * 16 15 14 18 18 C 1.34892 * 123.51077 * 0.02562 * 16 15 14 19 19 O 1.21744 * 120.76954 * 179.97438 * 18 16 15 20 20 C 1.46946 * 118.45573 * 0.02562 * 18 16 15 21 21 C 1.39126 * 122.91253 * 179.97438 * 20 18 16 22 22 C 1.37868 * 119.34368 * 180.02562 * 21 20 18 23 23 C 1.38877 * 120.74051 * 0.02562 * 22 21 20 24 24 C 1.37894 * 120.79469 * 359.97438 * 23 22 21 25 25 C 1.39061 * 119.39379 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.46878 * 263.82969 * 1 2 3 27 27 H 1.09006 * 109.46912 * 23.82920 * 1 2 3 28 28 H 1.08999 * 109.47006 * 143.82991 * 1 2 3 29 29 H 1.09000 * 109.46859 * 30.00057 * 3 2 1 30 30 H 1.09004 * 109.47171 * 150.00231 * 3 2 1 31 31 H 0.96992 * 119.99614 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.46776 * 269.97772 * 17 16 15 33 33 H 1.08993 * 109.47117 * 29.97423 * 17 16 15 34 34 H 1.08996 * 109.47224 * 149.97761 * 17 16 15 35 35 H 1.08003 * 120.32911 * 0.04559 * 21 20 18 36 36 H 1.07995 * 119.63296 * 179.97438 * 22 21 20 37 37 H 1.07996 * 119.60429 * 180.02562 * 23 22 21 38 38 H 1.07999 * 120.29850 * 179.72558 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5535 3.6181 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.3064 4.2603 -3.9001 10 1 4.6969 4.2007 -3.4966 11 1 3.5540 2.2206 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3539 -1.1676 0.0422 14 6 1.4016 -2.4453 -0.0530 15 7 0.0943 -2.4611 0.0425 16 7 -0.6176 -3.5235 0.0067 17 6 -2.0714 -3.3882 0.1251 18 6 -0.1011 -4.7617 -0.1343 19 8 -0.8259 -5.7395 -0.1617 20 6 1.3568 -4.9028 -0.2530 21 6 1.9875 -6.1340 -0.4012 22 6 3.3614 -6.1811 -0.5054 23 6 4.1168 -5.0166 -0.4632 24 6 3.5106 -3.7867 -0.3168 25 6 2.1259 -3.7168 -0.2100 26 1 -0.3633 -0.1105 1.0217 27 1 -0.3633 0.9401 -0.4152 28 1 -0.3633 -0.8296 -0.6065 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1383 0.5138 31 1 4.0303 4.4439 -0.8504 32 1 -2.3567 -3.4399 1.1759 33 1 -2.3819 -2.4289 -0.2888 34 1 -2.5573 -4.1950 -0.4235 35 1 1.4065 -7.0439 -0.4348 36 1 3.8558 -7.1344 -0.6202 37 1 5.1920 -5.0748 -0.5469 38 1 4.1062 -2.8865 -0.2806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917371851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:16 Heat of formation + Delta-G solvation = 30.322793 kcal Electronic energy + Delta-G solvation = -24324.773618 eV Core-core repulsion = 20748.477547 eV Total energy + Delta-G solvation = -3576.296071 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = -0.35 seconds Orbital eigenvalues (eV) -41.89245 -39.23273 -38.57896 -37.67936 -35.02096 -33.59090 -32.58204 -31.41794 -30.68018 -28.38994 -27.35299 -26.33861 -25.07202 -23.68836 -23.24885 -21.99290 -19.95668 -18.93000 -18.18892 -17.03651 -16.82204 -16.51334 -16.10513 -15.90331 -15.06418 -14.72623 -14.59025 -14.48259 -14.21428 -13.89769 -13.67524 -12.99047 -12.93395 -12.69442 -12.59851 -12.41739 -12.25924 -12.04750 -11.96290 -11.54714 -11.27686 -11.05649 -10.86408 -10.59827 -10.19959 -9.75461 -9.70747 -9.59518 -9.20200 -9.08115 -8.47683 -8.21919 -7.74509 -6.08918 -4.14085 0.45228 0.62111 1.68220 2.15097 2.59332 3.28219 3.34919 3.37577 3.46476 3.53676 3.86653 3.97943 4.39350 4.48073 4.63734 4.73501 4.95442 5.03384 5.10672 5.15723 5.23560 5.26192 5.40813 5.45623 5.54920 5.72400 5.91674 5.94527 6.07874 6.11269 6.32211 6.35734 6.45475 6.75418 6.96917 7.35580 7.41679 7.44806 7.86667 8.10045 8.15763 8.26100 8.75898 8.93735 9.51083 10.99139 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.004481 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.214083 B = 6246.630491 C = 7208.643023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.572 5.572 3 C 0.243 3.757 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.893 5.893 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.574 3.426 13 O -0.529 6.529 14 C 0.073 3.927 15 N -0.200 5.200 16 N -0.374 5.374 17 C 0.084 3.916 18 C 0.513 3.487 19 O -0.516 6.516 20 C -0.143 4.143 21 C -0.060 4.060 22 C -0.120 4.120 23 C -0.092 4.092 24 C -0.089 4.089 25 C -0.030 4.030 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.264 0.736 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.585 -15.826 1.986 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.302 5.302 3 C 0.124 3.876 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.358 3.642 13 O -0.406 6.406 14 C -0.106 4.106 15 N -0.023 5.023 16 N -0.194 5.194 17 C -0.056 4.056 18 C 0.307 3.693 19 O -0.392 6.392 20 C -0.149 4.149 21 C -0.079 4.079 22 C -0.140 4.140 23 C -0.110 4.110 24 C -0.108 4.108 25 C -0.034 4.034 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -7.101 -15.673 2.149 17.340 hybrid contribution 0.526 -0.212 -1.069 1.211 sum -6.574 -15.885 1.080 17.226 Atomic orbital electron populations 1.22160 0.80284 1.03017 1.01152 1.48117 1.07155 1.07138 1.67809 1.19461 0.92782 0.77489 0.97861 1.21402 1.36816 1.06491 0.92058 0.92320 1.24918 0.95242 0.96297 0.97469 1.69927 1.38204 1.14307 1.30755 0.86489 0.77713 0.78633 0.84557 1.20618 1.21045 1.19864 1.17060 0.86433 0.81605 0.79119 1.90629 1.12378 1.85438 1.52110 1.23214 0.87595 0.95212 1.04615 1.71034 1.08275 1.13264 1.09746 1.46236 1.09240 1.02603 1.61297 1.22104 0.74558 1.05006 1.03910 1.19096 0.89154 0.83424 0.77601 1.90831 1.61763 1.36813 1.49758 1.19904 0.91775 0.94872 1.08331 1.20891 0.94617 0.96103 0.96320 1.21315 0.93379 0.99018 1.00250 1.21557 1.00762 0.92059 0.96630 1.22165 0.93385 1.00363 0.94901 1.19352 0.94939 0.90446 0.98705 0.93334 0.91102 0.89815 0.94426 0.93290 0.92625 0.90459 0.88592 0.88722 0.84416 0.85014 0.84776 0.80720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 9.35 59.84 0.56 1.83 16 2 N -0.57 -11.99 2.86 -184.16 -0.53 -12.51 16 3 C 0.24 6.10 5.15 -5.19 -0.03 6.08 16 4 C -0.53 -14.48 9.39 -34.44 -0.32 -14.81 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.57 11.84 7.64 -12.42 -0.09 11.75 16 13 O -0.53 -12.17 13.30 5.29 0.07 -12.10 16 14 C 0.07 1.27 6.91 -80.72 -0.56 0.72 16 15 N -0.20 -3.04 6.48 34.51 0.22 -2.82 16 16 N -0.37 -5.17 3.62 -68.29 -0.25 -5.41 16 17 C 0.08 0.80 10.52 59.84 0.63 1.43 16 18 C 0.51 7.77 7.68 -12.68 -0.10 7.67 16 19 O -0.52 -8.32 16.16 5.15 0.08 -8.23 16 20 C -0.14 -2.12 5.90 -104.83 -0.62 -2.74 16 21 C -0.06 -0.74 9.70 -39.39 -0.38 -1.12 16 22 C -0.12 -1.26 10.01 -39.48 -0.40 -1.65 16 23 C -0.09 -1.06 10.01 -39.47 -0.40 -1.45 16 24 C -0.09 -1.33 9.35 -39.40 -0.37 -1.70 16 25 C -0.03 -0.49 5.90 -104.75 -0.62 -1.11 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.15 8.03 -51.93 -0.42 0.74 16 28 H 0.08 1.27 5.28 -52.00 -0.27 0.99 16 29 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.05 1.36 7.39 -51.93 -0.38 0.98 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 33 H 0.10 0.74 8.12 -51.93 -0.42 0.32 16 34 H 0.09 0.86 7.32 -51.93 -0.38 0.48 16 35 H 0.14 1.50 7.88 -52.48 -0.41 1.08 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.18 2.95 5.26 -52.49 -0.28 2.67 16 LS Contribution 325.38 15.07 4.90 4.90 Total: -1.00 -32.38 325.38 -6.78 -39.17 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.22 Total: -0.83 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -2.79 Total: 6.55 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 0.19 Total: -45.73 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.15 Total: -20.33 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.38 -6.78 -39.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917371851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.491 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.35 seconds