Wall clock time and date at job start Tue Mar 31 2020 04:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00258 * 2 1 4 4 C 1.50698 * 109.47172 * 270.00043 * 3 2 1 5 5 H 1.07999 * 120.00336 * 0.02562 * 4 3 2 6 6 C 1.37886 * 120.00002 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99921 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00050 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47084 * 90.00122 * 8 6 4 10 10 H 1.48493 * 109.47154 * 210.00538 * 8 6 4 11 11 H 1.48499 * 109.47007 * 330.00551 * 8 6 4 12 12 C 1.34776 * 120.00134 * 180.02562 * 2 1 3 13 13 O 1.21581 * 120.00179 * 182.32495 * 12 2 1 14 14 C 1.47644 * 119.99945 * 2.32801 * 12 2 1 15 15 N 1.31085 * 120.39052 * 352.79672 * 14 12 2 16 16 N 1.27934 * 124.25767 * 180.02562 * 15 14 12 17 17 C 1.46494 * 118.24423 * 180.02562 * 16 15 14 18 18 C 1.34892 * 123.51077 * 0.02562 * 16 15 14 19 19 O 1.21744 * 120.76954 * 179.97438 * 18 16 15 20 20 C 1.46946 * 118.45573 * 0.02562 * 18 16 15 21 21 C 1.39126 * 122.91253 * 179.97438 * 20 18 16 22 22 C 1.37868 * 119.34368 * 180.02562 * 21 20 18 23 23 C 1.38877 * 120.74051 * 0.02562 * 22 21 20 24 24 C 1.37894 * 120.79469 * 359.97438 * 23 22 21 25 25 C 1.39061 * 119.39379 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.46878 * 263.82969 * 1 2 3 27 27 H 1.09006 * 109.46912 * 23.82920 * 1 2 3 28 28 H 1.08999 * 109.47006 * 143.82991 * 1 2 3 29 29 H 1.09000 * 109.46859 * 30.00057 * 3 2 1 30 30 H 1.09004 * 109.47171 * 150.00231 * 3 2 1 31 31 H 0.96992 * 119.99614 * 179.97438 * 7 6 4 32 32 H 1.09008 * 109.46776 * 269.97772 * 17 16 15 33 33 H 1.08993 * 109.47117 * 29.97423 * 17 16 15 34 34 H 1.08996 * 109.47224 * 149.97761 * 17 16 15 35 35 H 1.08003 * 120.32911 * 0.04559 * 21 20 18 36 36 H 1.07995 * 119.63296 * 179.97438 * 22 21 20 37 37 H 1.07996 * 119.60429 * 180.02562 * 23 22 21 38 38 H 1.07999 * 120.29850 * 179.72558 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1261 2.8780 -1.6727 7 7 3.5535 3.6181 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.3064 4.2603 -3.9001 10 1 4.6969 4.2007 -3.4966 11 1 3.5540 2.2206 -4.3049 12 6 2.1389 -1.1672 -0.0005 13 8 3.3539 -1.1676 0.0422 14 6 1.4016 -2.4453 -0.0530 15 7 0.0943 -2.4611 0.0425 16 7 -0.6176 -3.5235 0.0067 17 6 -2.0714 -3.3882 0.1251 18 6 -0.1011 -4.7617 -0.1343 19 8 -0.8259 -5.7395 -0.1617 20 6 1.3568 -4.9028 -0.2530 21 6 1.9875 -6.1340 -0.4012 22 6 3.3614 -6.1811 -0.5054 23 6 4.1168 -5.0166 -0.4632 24 6 3.5106 -3.7867 -0.3168 25 6 2.1259 -3.7168 -0.2100 26 1 -0.3633 -0.1105 1.0217 27 1 -0.3633 0.9401 -0.4152 28 1 -0.3633 -0.8296 -0.6065 29 1 1.6084 2.0283 0.5138 30 1 3.1500 1.1383 0.5138 31 1 4.0303 4.4439 -0.8504 32 1 -2.3567 -3.4399 1.1759 33 1 -2.3819 -2.4289 -0.2888 34 1 -2.5573 -4.1950 -0.4235 35 1 1.4065 -7.0439 -0.4348 36 1 3.8558 -7.1344 -0.6202 37 1 5.1920 -5.0748 -0.5469 38 1 4.1062 -2.8865 -0.2806 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917371851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:14 Heat of formation + Delta-G solvation = 9.856637 kcal Electronic energy + Delta-G solvation = -24325.661097 eV Core-core repulsion = 20748.477547 eV Total energy + Delta-G solvation = -3577.183550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.121 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.04860 -40.74047 -39.62890 -38.95169 -36.72132 -34.96262 -34.37652 -32.46728 -31.78542 -30.00036 -28.62459 -27.72955 -26.51752 -24.95309 -24.67442 -23.25596 -21.38402 -20.05683 -19.42457 -18.68016 -18.23605 -17.88244 -17.38372 -17.30078 -16.61248 -16.24296 -15.97791 -15.70311 -15.52498 -15.06459 -14.68797 -14.45607 -14.42609 -13.91743 -13.84324 -13.69414 -13.48460 -13.29265 -13.21622 -12.97232 -12.90937 -12.60573 -12.50721 -12.23524 -12.10610 -11.69573 -10.95852 -10.76594 -10.61758 -10.57523 -10.21871 -9.51081 -9.28499 -8.20343 -6.34608 -0.67628 -0.48306 0.53150 1.08155 1.40107 1.42343 1.46667 1.52901 1.99790 2.14612 2.41544 2.66985 2.79026 3.10079 3.29847 3.46962 3.66912 3.88041 4.16035 4.22314 4.34262 4.40839 4.45982 4.48582 4.56233 4.69005 4.71761 4.79343 4.94752 4.99830 5.11120 5.16667 5.24057 5.33743 5.37567 5.57065 5.76566 5.82890 6.05890 6.27342 6.57279 6.73143 6.91270 7.19127 7.37744 8.86903 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.017704 B = 0.004481 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.214083 B = 6246.630491 C = 7208.643023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.583 5.583 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.013 3.987 7 N -0.925 5.925 8 Si 0.965 3.035 9 H -0.265 1.265 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.570 3.430 13 O -0.564 6.564 14 C 0.052 3.948 15 N -0.181 5.181 16 N -0.370 5.370 17 C 0.074 3.926 18 C 0.509 3.491 19 O -0.527 6.527 20 C -0.161 4.161 21 C -0.059 4.059 22 C -0.103 4.103 23 C -0.080 4.080 24 C -0.115 4.115 25 C -0.049 4.049 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.031 0.969 30 H 0.011 0.989 31 H 0.268 0.732 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.155 0.845 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.452 -17.903 1.002 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.313 5.313 3 C 0.137 3.863 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.186 4.186 7 N -0.565 5.565 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.356 3.644 13 O -0.442 6.442 14 C -0.127 4.127 15 N -0.006 5.006 16 N -0.190 5.190 17 C -0.065 4.065 18 C 0.304 3.696 19 O -0.404 6.404 20 C -0.167 4.167 21 C -0.078 4.078 22 C -0.121 4.121 23 C -0.098 4.098 24 C -0.135 4.135 25 C -0.052 4.052 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.049 0.951 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.113 0.887 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.173 0.827 36 H 0.194 0.806 37 H 0.182 0.818 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.012 -17.760 1.172 19.519 hybrid contribution 0.758 0.322 -0.712 1.089 sum -7.254 -17.438 0.460 18.892 Atomic orbital electron populations 1.22350 0.77511 1.03619 1.02852 1.48093 1.08841 1.05983 1.68341 1.18955 0.91536 0.79297 0.96465 1.21644 1.37078 1.06713 0.92776 0.92919 1.25774 0.94816 0.96300 1.01718 1.70037 1.38767 1.14762 1.32901 0.85449 0.78055 0.78190 0.79318 1.19045 1.20544 1.19868 1.17472 0.86319 0.82536 0.78116 1.90610 1.14052 1.86293 1.53279 1.22595 0.88427 0.94186 1.07462 1.70912 1.07553 1.13878 1.08273 1.46570 1.10541 1.02017 1.59900 1.22492 0.71955 1.06507 1.05504 1.19225 0.89388 0.83605 0.77384 1.90818 1.62065 1.37077 1.50453 1.20072 0.91695 0.95388 1.09594 1.21247 0.95683 0.95636 0.95232 1.21771 0.92581 1.00259 0.97537 1.21901 1.02402 0.91001 0.94452 1.22026 0.93101 1.01066 0.97263 1.19340 0.95450 0.90231 1.00226 0.91148 0.91142 0.88359 0.95055 0.97085 0.92319 0.88664 0.86533 0.88024 0.82694 0.80589 0.81811 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.57 9.35 127.77 1.19 3.76 16 2 N -0.58 -25.29 2.86 -854.81 -2.44 -27.73 16 3 C 0.26 13.61 5.15 85.63 0.44 14.05 16 4 C -0.54 -30.64 9.39 25.60 0.24 -30.40 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.75 5.46 84.66 0.46 1.21 16 7 N -0.93 -54.49 13.29 21.45 0.28 -54.21 16 8 Si 0.97 43.97 29.54 68.60 2.03 46.00 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 12 C 0.57 24.64 7.64 86.73 0.66 25.31 16 13 O -0.56 -27.73 13.30 -3.97 -0.05 -27.79 16 14 C 0.05 1.83 6.91 44.09 0.30 2.14 16 15 N -0.18 -5.39 6.48 -44.72 -0.29 -5.68 16 16 N -0.37 -9.68 3.62 -488.11 -1.77 -11.45 16 17 C 0.07 1.23 10.52 127.77 1.34 2.58 16 18 C 0.51 14.72 7.68 86.51 0.66 15.38 16 19 O -0.53 -16.03 16.16 -4.49 -0.07 -16.10 16 20 C -0.16 -4.61 5.90 -20.00 -0.12 -4.73 16 21 C -0.06 -1.30 9.70 22.40 0.22 -1.08 16 22 C -0.10 -1.77 10.01 22.34 0.22 -1.55 16 23 C -0.08 -1.68 10.01 22.34 0.22 -1.45 16 24 C -0.11 -3.50 9.35 22.39 0.21 -3.29 16 25 C -0.05 -1.58 5.90 -19.95 -0.12 -1.70 16 26 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.07 2.27 8.03 -2.38 -0.02 2.26 16 28 H 0.10 2.89 5.28 -2.48 -0.01 2.87 16 29 H 0.03 1.67 8.07 -2.39 -0.02 1.65 16 30 H 0.01 0.66 7.39 -2.38 -0.02 0.64 16 31 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 32 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.12 1.47 8.12 -2.39 -0.02 1.45 16 34 H 0.10 1.61 7.32 -2.39 -0.02 1.59 16 35 H 0.16 2.84 7.88 -2.91 -0.02 2.82 16 36 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.15 5.35 5.26 -2.91 -0.02 5.33 16 Total: -1.00 -72.93 325.38 4.73 -68.20 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 1.10 Total: 8.53 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 5.95 Total: 20.23 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -4.21 Total: -99.07 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.13 Total: -43.88 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -72.93 4.73 -68.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917371851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.056 kcal (2) G-P(sol) polarization free energy of solvation -72.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds