Wall clock time and date at job start Tue Mar 31 2020 03:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 120.00109 * 2 1 4 4 O 1.21686 * 120.00199 * 176.07835 * 3 2 1 5 5 C 1.46720 * 119.99791 * 356.07103 * 3 2 1 6 6 O 1.35338 * 126.64500 * 5.74263 * 5 3 2 7 7 C 1.33670 * 107.68418 * 179.87035 * 6 5 3 8 8 N 1.30613 * 109.15263 * 0.39887 * 7 6 5 9 9 C 1.33691 * 108.99540 * 359.75074 * 8 7 6 10 10 C 1.50699 * 126.27085 * 179.97438 * 9 8 7 11 11 F 1.39894 * 109.47385 * 120.02361 * 10 9 8 12 12 F 1.39899 * 109.46952 * 240.02474 * 10 9 8 13 13 C 1.46500 * 119.99866 * 179.97438 * 2 1 3 14 14 C 1.53944 * 113.73949 * 321.25547 * 13 2 1 15 15 N 1.47810 * 86.03402 * 90.88721 * 14 13 2 16 16 C 1.36939 * 134.45703 * 204.64125 * 15 14 13 17 17 H 1.07999 * 119.99997 * 179.86028 * 16 15 14 18 18 C 1.38812 * 119.99890 * 359.86934 * 16 15 14 19 19 N 1.31614 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99884 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47177 * 59.99980 * 20 18 16 22 22 H 1.48503 * 109.47007 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47434 * 299.99750 * 20 18 16 24 24 C 1.47585 * 91.05235 * 24.54840 * 15 14 13 25 25 H 1.09002 * 109.47214 * 275.62504 * 1 2 3 26 26 H 1.09003 * 109.46806 * 35.62411 * 1 2 3 27 27 H 1.08998 * 109.47089 * 155.62515 * 1 2 3 28 28 H 1.08002 * 125.42209 * 180.14939 * 7 6 5 29 29 H 1.09004 * 109.47562 * 0.02562 * 10 9 8 30 30 H 1.09010 * 112.94028 * 189.67143 * 13 2 1 31 31 H 1.09005 * 113.76867 * 205.14317 * 14 13 2 32 32 H 1.08996 * 113.77289 * 336.55007 * 14 13 2 33 33 H 0.97004 * 119.99977 * 180.02562 * 19 18 16 34 34 H 1.09000 * 113.76658 * 221.15236 * 24 15 14 35 35 H 1.08998 * 113.76984 * 89.75672 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3536 1.1685 0.0721 5 6 1.4078 2.4363 -0.0871 6 8 0.0644 2.5979 -0.0636 7 6 -0.1891 3.9065 -0.1643 8 7 0.9404 4.5558 -0.2572 9 6 1.9503 3.6808 -0.2131 10 6 3.4189 4.0098 -0.2895 11 9 4.0566 3.5699 0.8754 12 9 3.9827 3.3713 -1.3992 13 6 2.1974 -1.2687 0.0006 14 6 1.5554 -2.3546 0.8830 15 7 0.8156 -2.7589 -0.3311 16 6 -0.3674 -3.4091 -0.5613 17 1 -0.6980 -3.5861 -1.5741 18 6 -1.1416 -3.8404 0.5070 19 7 -0.7385 -3.6249 1.7412 20 14 -2.7557 -4.7267 0.1929 21 1 -2.4974 -5.9646 -0.5858 22 1 -3.3864 -5.0810 1.4898 23 1 -3.6662 -3.8398 -0.5749 24 6 1.8621 -2.1786 -1.1950 25 1 -0.3634 0.1007 1.0227 26 1 -0.3633 0.8354 -0.5986 27 1 -0.3633 -0.9360 -0.4241 28 1 -1.1715 4.3551 -0.1720 29 1 3.5452 5.0880 -0.3877 30 1 3.2669 -1.1419 0.1692 31 1 2.2608 -3.1060 1.2381 32 1 0.9197 -1.9583 1.6747 33 1 -1.2793 -3.9267 2.4878 34 1 1.4706 -1.6421 -2.0593 35 1 2.6577 -2.8781 -1.4516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043887203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:25 Heat of formation + Delta-G solvation = -26.514120 kcal Electronic energy + Delta-G solvation = -25338.752271 eV Core-core repulsion = 21205.762037 eV Total energy + Delta-G solvation = -4132.990234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.102 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -48.89584 -46.90261 -43.75019 -39.80502 -37.73517 -35.61280 -34.05628 -32.18307 -31.16687 -28.11513 -27.21148 -26.17851 -24.89135 -24.29014 -23.07482 -22.10490 -20.64793 -18.79765 -17.96018 -17.52108 -17.28832 -17.22535 -16.76999 -16.65489 -16.03448 -15.57886 -15.00742 -14.76689 -14.38321 -13.96057 -13.77998 -13.72653 -13.23872 -12.86645 -12.78527 -12.65131 -12.49517 -11.90541 -11.74496 -11.46202 -11.34771 -11.30051 -10.98799 -10.89762 -10.69968 -10.25416 -10.12787 -9.86819 -9.62999 -9.43156 -8.90086 -8.20060 -6.98450 -5.87893 -3.21966 0.54198 2.02650 2.19036 3.05209 3.15814 3.22901 3.31771 3.37258 3.38185 3.97013 4.16252 4.33960 4.36851 4.80035 4.97602 5.04087 5.12376 5.23739 5.37892 5.44179 5.57408 5.81460 6.01987 6.06749 6.14268 6.36288 6.42902 6.63235 6.84411 7.03977 7.11060 7.21063 7.43958 7.65775 7.85591 8.16583 8.92744 9.58888 10.46205 11.28079 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.004355 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.075625 B = 6428.436411 C = 7105.143331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.558 5.558 3 C 0.585 3.415 4 O -0.507 6.507 5 C -0.028 4.028 6 O -0.169 6.169 7 C 0.193 3.807 8 N -0.473 5.473 9 C -0.031 4.031 10 C 0.364 3.636 11 F -0.181 7.181 12 F -0.185 7.185 13 C 0.085 3.915 14 C 0.155 3.845 15 N -0.609 5.609 16 C -0.230 4.230 17 H 0.080 0.920 18 C -0.002 4.002 19 N -0.918 5.918 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.107 3.893 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.126 0.874 28 H 0.261 0.739 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.042 0.958 32 H 0.080 0.920 33 H 0.256 0.744 34 H 0.047 0.953 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.285 15.601 -3.381 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.288 5.288 3 C 0.370 3.630 4 O -0.384 6.384 5 C -0.086 4.086 6 O -0.054 6.054 7 C -0.033 4.033 8 N -0.201 5.201 9 C -0.155 4.155 10 C 0.309 3.691 11 F -0.162 7.162 12 F -0.166 7.166 13 C -0.019 4.019 14 C 0.029 3.971 15 N -0.337 5.337 16 C -0.357 4.357 17 H 0.098 0.902 18 C -0.199 4.199 19 N -0.564 5.564 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.019 4.019 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.145 0.855 28 H 0.276 0.724 29 H 0.146 0.854 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.634 15.975 -3.290 16.521 hybrid contribution -1.270 -1.366 -0.014 1.865 sum 1.364 14.609 -3.304 15.040 Atomic orbital electron populations 1.22333 0.77610 1.05582 1.02256 1.47364 1.08149 1.04449 1.68789 1.16574 0.86281 0.81023 0.79124 1.90926 1.11305 1.85377 1.50807 1.23423 0.80291 0.97579 1.07299 1.84919 1.23786 1.29208 1.67480 1.28408 1.00176 0.77252 0.97448 1.70121 0.97650 1.34018 1.18311 1.22343 0.97255 0.89065 1.06882 1.19133 0.81382 0.95877 0.72674 1.93072 1.82407 1.91879 1.48835 1.93057 1.85598 1.85007 1.52899 1.23094 0.95737 0.82671 1.00375 1.22679 0.92262 0.90190 0.91982 1.46257 1.17913 1.68057 1.01446 1.18955 0.93441 1.30561 0.92761 0.90248 1.24769 0.99035 1.01004 0.95135 1.69799 1.38612 1.50701 0.97276 0.86244 0.83200 0.79725 0.76828 1.21175 1.21547 1.21020 1.23010 0.91752 0.92968 0.94200 0.92581 0.92111 0.85550 0.72397 0.85425 0.88181 0.94009 0.90149 0.93430 0.93439 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 8.75 59.84 0.52 1.67 16 2 N -0.56 -10.32 3.09 -177.29 -0.55 -10.87 16 3 C 0.59 10.59 7.64 -12.83 -0.10 10.50 16 4 O -0.51 -10.09 13.44 5.20 0.07 -10.02 16 5 C -0.03 -0.44 6.80 -36.84 -0.25 -0.69 16 6 O -0.17 -2.17 7.46 4.43 0.03 -2.14 16 7 C 0.19 1.83 13.21 52.24 0.69 2.52 16 8 N -0.47 -5.69 11.26 -10.88 -0.12 -5.82 16 9 C -0.03 -0.44 6.59 -82.47 -0.54 -0.98 16 10 C 0.36 4.82 5.10 36.01 0.18 5.00 16 11 F -0.18 -2.79 16.01 2.25 0.04 -2.75 16 12 F -0.18 -2.80 16.41 2.25 0.04 -2.76 16 13 C 0.09 1.65 4.53 -70.16 -0.32 1.33 16 14 C 0.15 3.47 6.77 -2.84 -0.02 3.45 16 15 N -0.61 -14.40 2.27 -177.91 -0.40 -14.81 16 16 C -0.23 -5.94 9.69 -15.06 -0.15 -6.09 16 17 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 18 C 0.00 -0.06 5.50 -17.43 -0.10 -0.15 16 19 N -0.92 -25.48 11.39 55.49 0.63 -24.85 16 20 Si 0.91 20.90 29.55 -169.99 -5.02 15.88 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.11 2.13 8.39 -2.97 -0.02 2.11 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.94 5.32 -51.93 -0.28 0.66 16 27 H 0.13 2.65 5.10 -51.93 -0.26 2.39 16 28 H 0.26 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.10 1.87 7.20 -51.92 -0.37 1.50 16 31 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.98 6.90 -51.93 -0.36 1.63 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 304.62 15.07 4.59 4.59 Total: -1.00 -31.48 304.62 -4.15 -35.63 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.36 Total: -0.75 kcal Atomic # 6 Polarization: 18.76 SS G_CDS: -0.10 Total: 18.66 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.44 Total: -56.34 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.10 Total: -12.16 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 0.07 Total: -5.51 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.48 -4.15 -35.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043887203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.116 kcal (2) G-P(sol) polarization free energy of solvation -31.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds