Wall clock time and date at job start Tue Mar 31 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34779 * 120.00109 * 2 1 4 4 O 1.21686 * 120.00199 * 176.07835 * 3 2 1 5 5 C 1.46720 * 119.99791 * 356.07103 * 3 2 1 6 6 O 1.35338 * 126.64500 * 5.74263 * 5 3 2 7 7 C 1.33670 * 107.68418 * 179.87035 * 6 5 3 8 8 N 1.30613 * 109.15263 * 0.39887 * 7 6 5 9 9 C 1.33691 * 108.99540 * 359.75074 * 8 7 6 10 10 C 1.50699 * 126.27085 * 179.97438 * 9 8 7 11 11 F 1.39894 * 109.47385 * 120.02361 * 10 9 8 12 12 F 1.39899 * 109.46952 * 240.02474 * 10 9 8 13 13 C 1.46500 * 119.99866 * 179.97438 * 2 1 3 14 14 C 1.53944 * 113.73949 * 321.25547 * 13 2 1 15 15 N 1.47810 * 86.03402 * 90.88721 * 14 13 2 16 16 C 1.36939 * 134.45703 * 204.64125 * 15 14 13 17 17 H 1.07999 * 119.99997 * 179.86028 * 16 15 14 18 18 C 1.38812 * 119.99890 * 359.86934 * 16 15 14 19 19 N 1.31614 * 119.99878 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99884 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47177 * 59.99980 * 20 18 16 22 22 H 1.48503 * 109.47007 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47434 * 299.99750 * 20 18 16 24 24 C 1.47585 * 91.05235 * 24.54840 * 15 14 13 25 25 H 1.09002 * 109.47214 * 275.62504 * 1 2 3 26 26 H 1.09003 * 109.46806 * 35.62411 * 1 2 3 27 27 H 1.08998 * 109.47089 * 155.62515 * 1 2 3 28 28 H 1.08002 * 125.42209 * 180.14939 * 7 6 5 29 29 H 1.09004 * 109.47562 * 0.02562 * 10 9 8 30 30 H 1.09010 * 112.94028 * 189.67143 * 13 2 1 31 31 H 1.09005 * 113.76867 * 205.14317 * 14 13 2 32 32 H 1.08996 * 113.77289 * 336.55007 * 14 13 2 33 33 H 0.97004 * 119.99977 * 180.02562 * 19 18 16 34 34 H 1.09000 * 113.76658 * 221.15236 * 24 15 14 35 35 H 1.08998 * 113.76984 * 89.75672 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3536 1.1685 0.0721 5 6 1.4078 2.4363 -0.0871 6 8 0.0644 2.5979 -0.0636 7 6 -0.1891 3.9065 -0.1643 8 7 0.9404 4.5558 -0.2572 9 6 1.9503 3.6808 -0.2131 10 6 3.4189 4.0098 -0.2895 11 9 4.0566 3.5699 0.8754 12 9 3.9827 3.3713 -1.3992 13 6 2.1974 -1.2687 0.0006 14 6 1.5554 -2.3546 0.8830 15 7 0.8156 -2.7589 -0.3311 16 6 -0.3674 -3.4091 -0.5613 17 1 -0.6980 -3.5861 -1.5741 18 6 -1.1416 -3.8404 0.5070 19 7 -0.7385 -3.6249 1.7412 20 14 -2.7557 -4.7267 0.1929 21 1 -2.4974 -5.9646 -0.5858 22 1 -3.3864 -5.0810 1.4898 23 1 -3.6662 -3.8398 -0.5749 24 6 1.8621 -2.1786 -1.1950 25 1 -0.3634 0.1007 1.0227 26 1 -0.3633 0.8354 -0.5986 27 1 -0.3633 -0.9360 -0.4241 28 1 -1.1715 4.3551 -0.1720 29 1 3.5452 5.0880 -0.3877 30 1 3.2669 -1.1419 0.1692 31 1 2.2608 -3.1060 1.2381 32 1 0.9197 -1.9583 1.6747 33 1 -1.2793 -3.9267 2.4878 34 1 1.4706 -1.6421 -2.0593 35 1 2.6577 -2.8781 -1.4516 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043887203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:23 Heat of formation + Delta-G solvation = -49.021060 kcal Electronic energy + Delta-G solvation = -25339.728245 eV Core-core repulsion = 21205.762037 eV Total energy + Delta-G solvation = -4133.966208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.98780 -48.01619 -44.72586 -41.30538 -39.32485 -36.66158 -35.54498 -34.06649 -32.24586 -29.88643 -28.36922 -27.68017 -26.61263 -25.61142 -24.37574 -23.36662 -21.92011 -20.30248 -19.15135 -18.79469 -18.58050 -18.29751 -18.24842 -17.81031 -17.42787 -16.88697 -16.54663 -16.25500 -15.70889 -15.49152 -15.22265 -14.90205 -14.58490 -14.36709 -14.26234 -14.06516 -13.87012 -13.22944 -13.18927 -13.08093 -12.74864 -12.72062 -12.48697 -12.41281 -12.06448 -12.03215 -11.67066 -11.52812 -11.47643 -10.82524 -10.48772 -9.70834 -8.89663 -7.87979 -5.22470 -0.54293 1.13905 1.14683 1.49371 1.51353 1.57321 1.72315 1.86477 2.29827 2.48262 3.11251 3.14923 3.20774 3.30507 3.40926 3.78285 3.86521 3.92714 4.06213 4.24820 4.32194 4.38431 4.47277 4.65575 4.76135 4.82002 4.92344 5.05254 5.22367 5.28877 5.45179 5.57809 5.89665 6.13600 6.27104 6.76013 6.91966 7.61639 8.54331 9.27677 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.024256 B = 0.004355 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.075625 B = 6428.436411 C = 7105.143331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.566 5.566 3 C 0.587 3.413 4 O -0.532 6.532 5 C -0.069 4.069 6 O -0.177 6.177 7 C 0.230 3.770 8 N -0.490 5.490 9 C -0.018 4.018 10 C 0.353 3.647 11 F -0.197 7.197 12 F -0.198 7.198 13 C 0.103 3.897 14 C 0.156 3.844 15 N -0.627 5.627 16 C -0.231 4.231 17 H 0.084 0.916 18 C -0.054 4.054 19 N -0.948 5.948 20 Si 0.972 3.028 21 H -0.284 1.284 22 H -0.298 1.298 23 H -0.272 1.272 24 C 0.114 3.886 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.318 0.682 29 H 0.174 0.826 30 H 0.108 0.892 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.248 0.752 34 H 0.056 0.944 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.182 17.542 -4.557 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.296 5.296 3 C 0.374 3.626 4 O -0.412 6.412 5 C -0.126 4.126 6 O -0.063 6.063 7 C 0.006 3.994 8 N -0.217 5.217 9 C -0.143 4.143 10 C 0.299 3.701 11 F -0.178 7.178 12 F -0.179 7.179 13 C -0.001 4.001 14 C 0.030 3.970 15 N -0.354 5.354 16 C -0.359 4.359 17 H 0.102 0.898 18 C -0.248 4.248 19 N -0.597 5.597 20 Si 0.800 3.200 21 H -0.210 1.210 22 H -0.225 1.225 23 H -0.198 1.198 24 C -0.012 4.012 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.115 0.885 28 H 0.333 0.667 29 H 0.191 0.809 30 H 0.126 0.874 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.546 17.941 -4.500 18.562 hybrid contribution -0.960 -1.819 0.324 2.082 sum 0.586 16.122 -4.176 16.665 Atomic orbital electron populations 1.22111 0.77299 1.05024 1.01778 1.47374 1.08290 1.04421 1.69469 1.16784 0.86197 0.81612 0.77997 1.90898 1.12419 1.86063 1.51787 1.22816 0.81492 0.96719 1.11562 1.84857 1.22456 1.31034 1.67970 1.29836 1.01544 0.75667 0.92377 1.70211 0.97851 1.33660 1.19969 1.22564 0.98048 0.88912 1.04732 1.19759 0.80863 0.97851 0.71602 1.93035 1.82709 1.92262 1.49804 1.93023 1.85803 1.85552 1.53569 1.22792 0.95926 0.82616 0.98791 1.22542 0.91780 0.91176 0.91540 1.46433 1.18334 1.67891 1.02786 1.19263 0.94287 1.29463 0.92911 0.89830 1.25469 1.02050 1.02309 0.94971 1.69980 1.39666 1.52180 0.97841 0.85265 0.79871 0.78662 0.76172 1.21005 1.22454 1.19809 1.23108 0.90986 0.92922 0.94202 0.93668 0.89465 0.88530 0.66720 0.80942 0.87408 0.94804 0.92911 0.94267 0.92585 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.84 8.75 127.77 1.12 3.96 16 2 N -0.57 -20.94 3.09 -833.03 -2.58 -23.52 16 3 C 0.59 21.11 7.64 86.46 0.66 21.77 16 4 O -0.53 -21.28 13.44 -4.30 -0.06 -21.34 16 5 C -0.07 -2.03 6.80 24.04 0.16 -1.86 16 6 O -0.18 -4.07 7.46 -7.07 -0.05 -4.13 16 7 C 0.23 3.38 13.21 130.42 1.72 5.10 16 8 N -0.49 -10.08 11.26 -303.13 -3.41 -13.49 16 9 C -0.02 -0.47 6.59 41.83 0.28 -0.20 16 10 C 0.35 8.78 5.10 71.24 0.36 9.14 16 11 F -0.20 -5.95 16.01 44.97 0.72 -5.23 16 12 F -0.20 -5.83 16.41 44.97 0.74 -5.09 16 13 C 0.10 4.02 4.53 46.75 0.21 4.23 16 14 C 0.16 7.18 6.77 86.44 0.59 7.77 16 15 N -0.63 -29.90 2.27 -716.79 -1.62 -31.52 16 16 C -0.23 -12.00 9.69 84.03 0.81 -11.18 16 17 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 18 C -0.05 -2.88 5.50 84.86 0.47 -2.41 16 19 N -0.95 -53.98 11.39 21.65 0.25 -53.74 16 20 Si 0.97 43.17 29.55 68.60 2.03 45.20 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C 0.11 4.44 8.39 86.48 0.73 5.17 16 25 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.09 2.59 5.32 -2.39 -0.01 2.57 16 27 H 0.10 4.08 5.10 -2.39 -0.01 4.07 16 28 H 0.32 0.26 8.06 -2.91 -0.02 0.24 16 29 H 0.17 2.66 8.14 -2.38 -0.02 2.64 16 30 H 0.11 4.05 7.20 -2.38 -0.02 4.03 16 31 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.05 2.72 6.90 -2.39 -0.02 2.70 16 33 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -69.79 304.62 4.26 -65.53 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: 1.15 Total: 5.86 kcal Atomic # 6 Polarization: 34.38 SS G_CDS: 7.11 Total: 41.49 kcal Atomic # 7 Polarization: -114.91 SS G_CDS: -7.37 Total: -122.27 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.11 Total: -25.47 kcal Atomic # 9 Polarization: -11.78 SS G_CDS: 1.46 Total: -10.32 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.79 4.26 -65.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043887203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.509 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds