Wall clock time and date at job start Tue Mar 31 2020 03:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00163 * 2 1 4 4 H 1.48499 * 109.47217 * 270.00140 * 3 2 1 5 5 H 1.48504 * 109.47046 * 29.99703 * 3 2 1 6 6 H 1.48500 * 109.47375 * 150.00074 * 3 2 1 7 7 C 1.38814 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00184 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99618 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99525 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.64189 * 34.29929 * 10 9 7 12 12 C 1.54321 * 110.72218 * 271.15448 * 10 9 7 13 13 N 1.47019 * 107.27531 * 219.26939 * 12 10 9 14 14 C 1.34778 * 125.65277 * 178.97403 * 13 12 10 15 15 O 1.21276 * 120.00255 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99371 * 359.97438 * 14 13 12 17 17 F 1.39902 * 109.46690 * 184.99700 * 16 14 13 18 18 F 1.39897 * 109.47147 * 304.99269 * 16 14 13 19 19 C 1.47431 * 108.70142 * 358.94050 * 13 12 10 20 20 C 1.55157 * 110.71610 * 157.44128 * 10 9 7 21 21 H 1.09004 * 111.00537 * 272.11719 * 20 10 9 22 22 N 1.46494 * 111.00680 * 35.96865 * 20 10 9 23 23 C 1.35313 * 125.86977 * 84.71524 * 22 20 10 24 24 C 1.35347 * 106.17722 * 179.90629 * 23 22 20 25 25 N 1.33775 * 106.49550 * 0.35149 * 24 23 22 26 26 N 1.28632 * 108.88492 * 359.77511 * 25 24 23 27 27 H 0.97004 * 120.00220 * 0.02562 * 1 2 3 28 28 H 0.96996 * 120.00087 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.88480 * 338.69050 * 12 10 9 30 30 H 1.09004 * 109.87910 * 99.84974 * 12 10 9 31 31 H 1.08991 * 109.47534 * 64.99887 * 16 14 13 32 32 H 1.08999 * 110.36190 * 142.96411 * 19 13 12 33 33 H 1.08998 * 110.36491 * 265.18090 * 19 13 12 34 34 H 1.08001 * 126.91401 * 0.02562 * 23 22 20 35 35 H 1.08002 * 126.75365 * 180.12119 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9800 -3.5682 0.5753 12 6 2.3563 -4.1151 -1.4425 13 7 2.1729 -5.5732 -1.4842 14 6 2.3201 -6.3527 -2.5739 15 8 2.1433 -7.5496 -2.4916 16 6 2.7045 -5.7367 -3.8945 17 9 2.6846 -6.7189 -4.8905 18 9 1.7948 -4.7247 -4.2193 19 6 1.8020 -6.0417 -0.1364 20 6 1.1719 -4.8022 0.5573 21 1 1.2584 -4.8713 1.6417 22 7 -0.2257 -4.6283 0.1541 23 6 -0.7695 -5.0339 -1.0166 24 6 -2.0742 -4.6765 -0.9702 25 7 -2.2604 -4.0708 0.2079 26 7 -1.1461 -4.0583 0.8504 27 1 -0.4851 0.8401 -0.0004 28 1 0.3555 -2.3880 -0.0002 29 1 1.6647 -3.6346 -2.1346 30 1 3.3833 -3.8629 -1.7068 31 1 3.7066 -5.3145 -3.8205 32 1 1.0737 -6.8499 -0.2029 33 1 2.6870 -6.3732 0.4068 34 1 -0.2647 -5.5423 -1.8247 35 1 -2.8177 -4.8439 -1.7355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070111304.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:32 Heat of formation + Delta-G solvation = 5.904746 kcal Electronic energy + Delta-G solvation = -25690.462833 eV Core-core repulsion = 21591.171137 eV Total energy + Delta-G solvation = -4099.291696 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.31128 -47.33482 -42.91063 -40.17711 -38.00123 -34.49048 -33.65330 -31.46596 -30.64944 -30.12274 -27.94468 -27.80747 -24.39405 -23.69105 -22.23798 -21.85628 -20.32814 -20.18944 -18.46629 -17.96662 -17.75462 -17.56641 -17.00293 -16.19629 -15.66013 -15.62034 -14.78931 -14.69114 -14.27810 -14.13312 -13.93051 -13.75758 -13.69913 -13.50053 -13.27319 -12.92726 -12.85614 -12.34095 -12.27673 -11.83756 -11.36962 -11.22243 -11.04753 -10.97801 -10.49903 -10.28570 -10.23529 -10.00925 -9.67420 -9.21067 -8.98261 -8.93166 -7.33558 -5.96681 -3.34042 1.88112 2.01938 2.22741 2.61173 3.06126 3.30804 3.35268 3.39241 3.52099 3.74401 4.02183 4.33147 4.36965 4.46671 4.54099 4.77126 4.84808 5.08606 5.16372 5.30582 5.36097 5.40617 5.50395 5.63739 5.74988 5.81915 5.89783 6.11805 6.25487 6.54030 6.97047 6.98058 7.46039 7.49206 8.15299 8.98104 9.28614 9.75210 10.09162 11.22718 Molecular weight = 301.11amu Principal moments of inertia in cm(-1) A = 0.013650 B = 0.005993 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.716291 B = 4670.806250 C = 5736.154432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.003 3.997 3 Si 0.911 3.089 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.271 4.271 8 H 0.076 0.924 9 N -0.705 5.705 10 C 0.169 3.831 11 H 0.095 0.905 12 C 0.051 3.949 13 N -0.603 5.603 14 C 0.487 3.513 15 O -0.510 6.510 16 C 0.262 3.738 17 F -0.178 7.178 18 F -0.180 7.180 19 C 0.105 3.895 20 C 0.113 3.887 21 H 0.138 0.862 22 N -0.271 5.271 23 C -0.046 4.046 24 C -0.055 4.055 25 N -0.269 5.269 26 N -0.063 5.063 27 H 0.261 0.739 28 H 0.394 0.606 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.174 0.826 35 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -12.319 -4.079 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.196 4.196 3 Si 0.741 3.259 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.402 4.402 8 H 0.094 0.906 9 N -0.345 5.345 10 C 0.053 3.947 11 H 0.113 0.887 12 C -0.075 4.075 13 N -0.338 5.338 14 C 0.270 3.730 15 O -0.385 6.385 16 C 0.205 3.795 17 F -0.159 7.159 18 F -0.162 7.162 19 C -0.019 4.019 20 C 0.008 3.992 21 H 0.155 0.845 22 N -0.065 5.065 23 C -0.197 4.197 24 C -0.212 4.212 25 N -0.135 5.135 26 N -0.042 5.042 27 H 0.071 0.929 28 H 0.231 0.769 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.153 0.847 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.191 0.809 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.294 -12.076 -2.769 13.896 hybrid contribution 0.533 0.495 -1.416 1.592 sum 6.827 -11.581 -4.186 14.080 Atomic orbital electron populations 1.69699 1.05216 1.26415 1.54365 1.24868 0.95490 0.98085 1.01152 0.86168 0.78697 0.83407 0.77640 1.21427 1.21486 1.20485 1.19153 0.91037 0.83451 1.46517 0.90616 1.42446 1.06456 0.98820 1.86823 1.21545 0.94928 0.86343 0.91869 0.88749 1.23916 1.02715 0.76649 1.04188 1.48583 1.66899 1.09914 1.08354 1.20745 0.79606 0.87251 0.85355 1.90811 1.49275 1.13872 1.84546 1.21512 0.95216 0.78434 0.84360 1.93054 1.97411 1.63304 1.62129 1.93097 1.69851 1.59876 1.93336 1.22665 1.01041 0.95778 0.82411 1.23407 0.76222 0.97524 1.02025 0.84470 1.47141 1.09962 1.37085 1.12318 1.23391 0.95510 1.07979 0.92824 1.23475 0.95741 1.03720 0.98266 1.75112 1.16249 1.16601 1.05573 1.78402 0.91876 1.13936 1.20006 0.92910 0.76862 0.89129 0.90509 0.84691 0.88964 0.87762 0.80889 0.79959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.79 13.06 55.49 0.72 -26.07 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.91 21.04 29.55 -169.99 -5.02 16.01 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.27 -6.79 9.97 -15.06 -0.15 -6.94 16 8 H 0.08 1.77 7.83 -52.48 -0.41 1.36 16 9 N -0.70 -15.77 5.12 -51.65 -0.26 -16.04 16 10 C 0.17 2.63 3.46 -66.09 -0.23 2.40 16 11 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 12 C 0.05 0.68 5.58 -3.07 -0.02 0.67 16 13 N -0.60 -7.05 2.17 -170.21 -0.37 -7.42 16 14 C 0.49 6.07 7.45 -10.98 -0.08 5.98 16 15 O -0.51 -7.83 16.88 5.56 0.09 -7.74 16 16 C 0.26 2.82 5.17 36.01 0.19 3.00 16 17 F -0.18 -2.21 16.95 2.25 0.04 -2.17 16 18 F -0.18 -2.30 15.84 2.25 0.04 -2.27 16 19 C 0.10 1.11 5.90 -2.26 -0.01 1.09 16 20 C 0.11 1.52 4.08 -65.52 -0.27 1.25 16 21 H 0.14 1.62 8.14 -51.93 -0.42 1.19 16 22 N -0.27 -4.55 2.45 -52.43 -0.13 -4.68 16 23 C -0.05 -0.74 10.02 -17.05 -0.17 -0.91 16 24 C -0.06 -0.93 12.05 -17.74 -0.21 -1.14 16 25 N -0.27 -5.49 12.41 30.24 0.38 -5.11 16 26 N -0.06 -1.27 12.23 60.35 0.74 -0.54 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.39 9.94 5.95 -40.82 -0.24 9.69 16 29 H 0.09 1.48 7.04 -51.93 -0.37 1.11 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.14 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.02 7.77 -51.93 -0.40 0.62 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.17 2.47 6.80 -52.49 -0.36 2.11 16 35 H 0.18 2.42 8.06 -52.49 -0.42 1.99 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -33.34 309.59 -3.62 -36.96 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -3.45 Total: 9.00 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.05 Total: 5.39 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 1.07 Total: -59.85 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.07 Total: -4.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.34 -3.62 -36.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070111304.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.868 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds