Wall clock time and date at job start Tue Mar 31 2020 03:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28712 * 125.87319 * 2 1 4 4 N 1.28628 * 110.18336 * 179.97438 * 3 2 1 5 5 C 1.33773 * 108.88456 * 359.76482 * 4 3 2 6 6 C 1.35317 * 125.86379 * 179.97438 * 2 1 3 7 7 S 1.76192 * 126.91424 * 359.97438 * 6 2 1 8 8 O 1.42103 * 106.40640 * 336.46834 * 7 6 2 9 9 O 1.42098 * 106.40355 * 203.54414 * 7 6 2 10 10 N 1.65606 * 107.21728 * 90.00916 * 7 6 2 11 11 C 1.46957 * 120.59424 * 89.99573 * 10 7 6 12 12 C 1.53378 * 108.63600 * 235.24988 * 11 10 7 13 13 N 1.46960 * 108.63441 * 310.57541 * 12 11 10 14 14 C 1.36929 * 120.59772 * 235.19929 * 13 12 11 15 15 H 1.08001 * 120.00154 * 26.80307 * 14 13 12 16 16 C 1.38818 * 120.00276 * 206.52209 * 14 13 12 17 17 N 1.31616 * 120.00013 * 217.35632 * 16 14 13 18 18 Si 1.86795 * 119.99797 * 37.35637 * 16 14 13 19 19 H 1.48497 * 109.47307 * 95.28345 * 18 16 14 20 20 H 1.48499 * 109.46918 * 215.28171 * 18 16 14 21 21 H 1.48500 * 109.47058 * 335.28197 * 18 16 14 22 22 C 1.46972 * 118.81093 * 55.48291 * 13 12 11 23 23 C 1.46973 * 120.59169 * 270.02386 * 10 7 6 24 24 H 1.08994 * 109.47307 * 270.02283 * 1 2 3 25 25 H 1.09003 * 109.46584 * 30.02467 * 1 2 3 26 26 H 1.08999 * 109.47158 * 150.02238 * 1 2 3 27 27 H 1.07999 * 126.75654 * 180.23816 * 5 4 3 28 28 H 1.09004 * 109.60829 * 115.50780 * 11 10 7 29 29 H 1.08993 * 109.75563 * 355.08239 * 11 10 7 30 30 H 1.09001 * 109.60979 * 190.83526 * 12 11 10 31 31 H 1.08998 * 109.74677 * 70.41012 * 12 11 10 32 32 H 0.97000 * 120.00046 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.61298 * 64.25873 * 22 13 12 34 34 H 1.08995 * 109.61261 * 184.77395 * 22 13 12 35 35 H 1.08994 * 109.60538 * 244.49252 * 23 10 7 36 36 H 1.09004 * 109.60748 * 4.83367 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2193 1.0430 0.0000 4 7 3.4576 0.6951 0.0005 5 6 3.5322 -0.6405 0.0061 6 6 2.2578 -1.0966 0.0005 7 16 1.7361 -2.7796 0.0019 8 8 0.4237 -2.7925 0.5466 9 8 2.8112 -3.5325 0.5465 10 7 1.5907 -3.2490 -1.5796 11 6 2.7333 -3.8354 -2.2938 12 6 2.9865 -3.0191 -3.5674 13 7 1.7127 -2.8561 -4.2818 14 6 1.5926 -3.2433 -5.5897 15 1 2.2234 -4.0279 -5.9808 16 6 0.6560 -2.6314 -6.4116 17 7 0.0033 -3.3409 -7.3076 18 14 0.3222 -0.8010 -6.2459 19 1 1.1435 -0.0566 -7.2340 20 1 -1.1169 -0.5355 -6.4981 21 1 0.6747 -0.3558 -4.8737 22 6 0.5716 -2.2644 -3.5692 23 6 0.3167 -3.0859 -2.2941 24 1 -0.3633 0.0004 1.0276 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5135 27 1 4.4321 -1.2376 0.0116 28 1 2.5073 -4.8680 -2.5601 29 1 3.6187 -3.8068 -1.6589 30 1 3.6981 -3.5453 -4.2037 31 1 3.3861 -2.0398 -3.3038 32 1 -0.6508 -2.9133 -7.8822 33 1 0.8016 -1.2327 -3.3030 34 1 -0.3121 -2.2920 -4.2067 35 1 -0.0813 -4.0651 -2.5603 36 1 -0.3958 -2.5624 -1.6565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116710986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:03 Heat of formation + Delta-G solvation = 49.925155 kcal Electronic energy + Delta-G solvation = -24019.050550 eV Core-core repulsion = 20475.508109 eV Total energy + Delta-G solvation = -3543.542441 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.100 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.55088 -39.44820 -38.70169 -37.21509 -35.87736 -35.67972 -33.38364 -32.64111 -32.20011 -29.09933 -28.39319 -25.13581 -24.70519 -24.49598 -23.68721 -21.92485 -20.29220 -19.62610 -18.97252 -18.21971 -17.81833 -17.60807 -17.17556 -16.82205 -16.01693 -15.79477 -15.56112 -15.38325 -15.08038 -14.68100 -14.38252 -14.26427 -14.22194 -13.90702 -13.71013 -13.40466 -13.31508 -13.18085 -12.78567 -12.73638 -12.51314 -12.30025 -12.22249 -12.07839 -11.71375 -11.45118 -11.43165 -11.06206 -10.75871 -10.23612 -8.90309 -8.23088 -5.36902 -1.00933 -0.16820 1.09603 1.12257 1.31662 1.45980 1.49122 1.69222 2.40132 2.43166 2.82435 2.93173 3.32716 3.40248 3.57771 3.65405 3.82950 4.08656 4.15100 4.30797 4.39869 4.42198 4.48932 4.52932 4.59759 4.78166 4.79746 4.88308 5.05555 5.08226 5.08830 5.34372 5.47005 5.86935 6.14029 6.92320 6.99818 7.65023 8.07141 8.94867 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.006401 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.811006 B = 4372.947219 C = 4913.630498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.214 5.214 3 N -0.065 5.065 4 N -0.308 5.308 5 C 0.063 3.937 6 C -0.602 4.602 7 S 2.737 3.263 8 O -0.954 6.954 9 O -0.947 6.947 10 N -0.980 5.980 11 C 0.106 3.894 12 C 0.124 3.876 13 N -0.610 5.610 14 C -0.258 4.258 15 H 0.056 0.944 16 C -0.009 4.009 17 N -0.924 5.924 18 Si 0.889 3.111 19 H -0.310 1.310 20 H -0.294 1.294 21 H -0.239 1.239 22 C 0.124 3.876 23 C 0.105 3.895 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.116 0.884 27 H 0.232 0.768 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.262 0.738 33 H 0.032 0.968 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 2.667 16.913 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.012 5.012 3 N -0.047 5.047 4 N -0.169 5.169 5 C -0.100 4.100 6 C -0.813 4.813 7 S 2.819 3.181 8 O -0.944 6.944 9 O -0.936 6.936 10 N -0.820 5.820 11 C -0.020 4.020 12 C -0.002 4.002 13 N -0.334 5.334 14 C -0.387 4.387 15 H 0.074 0.926 16 C -0.207 4.207 17 N -0.567 5.567 18 Si 0.717 3.283 19 H -0.239 1.239 20 H -0.221 1.221 21 H -0.163 1.163 22 C -0.003 4.003 23 C -0.021 4.021 24 H 0.149 0.851 25 H 0.150 0.850 26 H 0.134 0.866 27 H 0.248 0.752 28 H 0.101 0.899 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.784 3.761 17.535 17.951 hybrid contribution -0.104 0.594 -1.171 1.317 sum 0.680 4.355 16.364 16.947 Atomic orbital electron populations 1.23262 0.69318 1.08472 1.08601 1.47428 1.10707 1.02285 1.40806 1.78125 0.97207 1.13482 1.15928 1.75116 1.09679 1.13335 1.18776 1.24195 0.97512 0.91521 0.96735 1.35149 1.00803 1.18643 1.26752 1.01177 0.73192 0.71484 0.72286 1.93562 1.37761 1.86403 1.76625 1.93597 1.56816 1.66749 1.76483 1.57473 1.19388 1.74452 1.30671 1.22121 0.87677 0.98034 0.94140 1.21546 0.87650 0.97924 0.93092 1.44338 1.07582 1.73129 1.08346 1.18738 1.19507 1.13529 0.86944 0.92620 1.25636 0.97831 1.00361 0.96876 1.70193 1.24410 1.36105 1.26035 0.86746 0.76038 0.86106 0.79385 1.23867 1.22125 1.16303 1.21830 0.90947 0.94585 0.92950 1.22237 0.83415 1.02609 0.93880 0.85111 0.85006 0.86607 0.75189 0.89854 0.86553 0.90434 0.94914 0.92914 0.95053 0.92079 0.89760 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.52 127.77 1.34 2.00 16 2 N -0.21 -5.12 3.74 -366.38 -1.37 -6.49 16 3 N -0.07 -1.87 13.16 37.02 0.49 -1.38 16 4 N -0.31 -9.09 12.41 -58.25 -0.72 -9.82 16 5 C 0.06 1.54 11.85 83.73 0.99 2.53 16 6 C -0.60 -14.46 7.06 83.49 0.59 -13.87 16 7 S 2.74 63.47 5.68 -56.49 -0.32 63.15 16 8 O -0.95 -23.01 14.60 -128.00 -1.87 -24.88 16 9 O -0.95 -24.43 16.57 -128.00 -2.12 -26.55 16 10 N -0.98 -24.63 3.26 -511.42 -1.67 -26.30 16 11 C 0.11 2.69 6.54 86.42 0.57 3.25 16 12 C 0.12 4.01 6.67 86.42 0.58 4.59 16 13 N -0.61 -25.18 2.71 -697.32 -1.89 -27.07 16 14 C -0.26 -13.27 9.84 84.04 0.83 -12.44 16 15 H 0.06 3.12 8.05 -2.91 -0.02 3.10 16 16 C -0.01 -0.49 4.80 84.86 0.41 -0.08 16 17 N -0.92 -54.01 13.97 21.65 0.30 -53.71 16 18 Si 0.89 41.72 26.46 68.60 1.82 43.53 16 19 H -0.31 -15.33 7.11 99.48 0.71 -14.62 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.24 -10.22 4.99 99.48 0.50 -9.72 16 22 C 0.12 4.45 4.58 86.56 0.40 4.85 16 23 C 0.11 2.85 6.57 86.56 0.57 3.42 16 24 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.12 1.67 5.37 -2.39 -0.01 1.66 16 27 H 0.23 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.12 2.27 7.10 -2.39 -0.02 2.25 16 30 H 0.08 2.48 7.93 -2.39 -0.02 2.46 16 31 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.03 1.11 6.78 -2.39 -0.02 1.10 16 34 H 0.06 2.44 5.59 -2.39 -0.01 2.42 16 35 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.11 2.27 5.69 -2.39 -0.01 2.25 16 Total: -1.00 -71.07 303.79 -0.19 -71.26 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: 0.90 Total: 4.00 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 6.27 Total: -5.75 kcal Atomic # 7 Polarization: -119.91 SS G_CDS: -4.86 Total: -124.77 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -3.99 Total: -51.43 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 1.82 Total: 43.53 kcal Atomic # 16 Polarization: 63.47 SS G_CDS: -0.32 Total: 63.15 kcal Total: -71.07 -0.19 -71.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116710986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.183 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds