Wall clock time and date at job start Tue Mar 31 2020 03:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00486 * 2 1 4 4 C 1.53000 * 109.47669 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47025 * 180.02562 * 4 3 2 6 6 N 1.30290 * 126.34086 * 89.98185 * 5 4 3 7 7 N 1.28524 * 110.08135 * 179.97438 * 6 5 4 8 8 C 1.31284 * 109.85398 * 359.97438 * 7 6 5 9 9 S 1.76209 * 126.48497 * 179.74060 * 8 7 6 10 10 C 1.80998 * 99.99789 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.47289 * 179.97438 * 10 9 8 12 12 O 1.21293 * 119.99584 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00135 * 179.97438 * 11 10 9 14 14 C 1.37094 * 119.99892 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99938 * 0.02562 * 14 13 11 16 16 C 1.38944 * 120.00237 * 180.02562 * 14 13 11 17 17 N 1.31416 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00350 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46869 * 89.99785 * 18 16 14 20 20 H 1.48500 * 109.46916 * 209.99881 * 18 16 14 21 21 H 1.48498 * 109.46703 * 329.99821 * 18 16 14 22 22 N 1.36540 * 107.03385 * 359.97438 * 8 7 6 23 23 N 1.36593 * 127.14462 * 179.97438 * 22 8 7 24 24 H 1.09006 * 109.47036 * 59.99676 * 1 2 3 25 25 H 1.08994 * 109.47270 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46957 * 300.00251 * 1 2 3 27 27 H 1.09005 * 109.47080 * 59.99463 * 3 2 1 28 28 H 1.09005 * 109.47218 * 300.00258 * 3 2 1 29 29 H 1.09000 * 109.46785 * 59.99808 * 4 3 2 30 30 H 1.09000 * 109.46653 * 300.00278 * 4 3 2 31 31 H 1.08998 * 109.47424 * 300.00146 * 10 9 8 32 32 H 1.09005 * 109.47255 * 59.99890 * 10 9 8 33 33 H 0.97001 * 120.00029 * 0.02562 * 13 11 10 34 34 H 0.97001 * 119.99740 * 180.02562 * 17 16 14 35 35 H 1.00902 * 111.00484 * 90.02749 * 23 22 8 36 36 H 1.00900 * 111.00191 * 213.98563 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1484 2.5613 0.0013 6 7 4.4616 3.2665 1.0511 7 7 4.9642 4.3935 0.6918 8 6 4.9995 4.4685 -0.6185 9 16 5.5970 5.8226 -1.5747 10 6 6.0918 6.9501 -0.2481 11 6 6.6505 8.2154 -0.8464 12 8 6.7080 8.3425 -2.0513 13 7 7.0852 9.2061 -0.0427 14 6 7.5930 10.3574 -0.5870 15 1 7.6442 10.4706 -1.6599 16 6 8.0417 11.3786 0.2415 17 7 7.9798 11.2406 1.5469 18 14 8.7329 12.9475 -0.5002 19 1 7.6346 13.9272 -0.6979 20 1 9.7498 13.5223 0.4167 21 1 9.3637 12.6402 -1.8090 22 7 4.4807 3.3009 -1.1000 23 7 4.3242 2.9462 -2.4098 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6435 -0.8891 30 1 3.8567 0.6438 0.8909 31 1 5.2245 7.1906 0.3667 32 1 6.8535 6.4732 0.3689 33 1 7.0389 9.1046 0.9209 34 1 8.2927 11.9537 2.1253 35 1 5.1433 2.4690 -2.7556 36 1 3.4972 2.3820 -2.5353 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001307308657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:28 Heat of formation + Delta-G solvation = 18.539967 kcal Electronic energy + Delta-G solvation = -21072.441773 eV Core-core repulsion = 17527.538368 eV Total energy + Delta-G solvation = -3544.903405 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.100 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.10566 -38.45778 -38.20469 -36.69520 -34.07807 -33.67368 -31.43153 -30.14174 -29.70714 -28.99347 -26.88823 -24.72002 -24.05197 -22.88197 -21.49330 -19.71086 -18.62662 -17.97496 -17.67481 -17.03558 -16.94054 -16.33991 -15.96051 -15.67340 -15.16923 -14.56161 -14.52920 -14.43714 -14.06024 -13.90491 -13.26537 -12.63837 -12.53516 -12.11980 -12.08887 -12.07058 -11.77551 -11.56690 -11.43020 -11.10531 -10.83505 -10.43385 -10.30295 -10.21609 -10.16884 -10.01209 -9.76171 -9.61299 -8.65883 -8.08855 -7.41691 -6.49427 -3.91382 1.13898 1.39072 2.03484 2.37400 2.57471 3.13633 3.13769 3.24142 3.29944 3.73445 3.87670 4.11740 4.16337 4.46190 4.57549 4.76958 4.81398 4.88729 4.91239 5.08130 5.15814 5.15913 5.22046 5.34827 5.51370 5.64992 5.71188 5.82114 6.12561 6.13558 6.56686 7.14489 7.48355 7.92896 8.45751 8.46009 9.05931 9.39840 9.88239 10.67437 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.040653 B = 0.002465 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.598848 B =11354.233485 C =11691.499083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.065 3.935 4 C -0.026 4.026 5 C 0.135 3.865 6 N -0.261 5.261 7 N -0.294 5.294 8 C 0.180 3.820 9 S 0.110 5.890 10 C -0.137 4.137 11 C 0.451 3.549 12 O -0.585 6.585 13 N -0.545 5.545 14 C -0.304 4.304 15 H 0.107 0.893 16 C 0.025 3.975 17 N -0.894 5.894 18 Si 0.934 3.066 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.268 1.268 22 N -0.309 5.309 23 N -0.582 5.582 24 H 0.043 0.957 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.397 0.603 34 H 0.274 0.726 35 H 0.367 0.633 36 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.515 -21.364 -3.595 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.013 4.013 4 C -0.066 4.066 5 C -0.136 4.136 6 N -0.102 5.102 7 N -0.140 5.140 8 C -0.193 4.193 9 S 0.338 5.662 10 C -0.290 4.290 11 C 0.235 3.765 12 O -0.472 6.472 13 N -0.181 5.181 14 C -0.433 4.433 15 H 0.124 0.876 16 C -0.177 4.177 17 N -0.534 5.534 18 Si 0.760 3.240 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.193 1.193 22 N -0.093 5.093 23 N -0.214 5.214 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.230 0.770 34 H 0.084 0.916 35 H 0.185 0.815 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.097 -19.981 -4.102 23.221 hybrid contribution -0.116 -0.658 0.622 0.913 sum -11.214 -20.640 -3.480 23.745 Atomic orbital electron populations 1.22781 0.80240 1.03045 1.00394 1.87820 1.20333 1.27259 1.95544 1.22446 0.92258 0.85108 1.01439 1.19729 0.93347 0.87628 1.05898 1.25017 1.07009 0.97978 0.83557 1.73938 1.12896 1.00076 1.23287 1.74918 1.20129 1.12961 1.05998 1.27643 1.03120 0.93265 0.95292 1.86498 1.73452 1.02712 1.03576 1.23745 1.06042 0.98235 1.00967 1.18880 0.85735 0.84479 0.87389 1.90559 1.61584 1.81020 1.14010 1.41748 1.53249 1.14102 1.08953 1.19752 1.37279 0.91867 0.94421 0.87560 1.25336 0.97391 0.99849 0.95172 1.69623 1.46520 1.34660 1.02624 0.85800 0.78607 0.80730 0.78831 1.20246 1.20813 1.19266 1.44985 1.49082 1.13243 1.02012 1.59595 1.10570 1.53890 0.97305 0.93869 0.89268 0.93676 0.91835 0.93215 0.89645 0.86876 0.87156 0.87193 0.76964 0.91586 0.81463 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.12 10.70 -35.23 -0.38 -3.49 16 3 C 0.07 0.50 5.92 37.16 0.22 0.72 16 4 C -0.03 -0.21 5.89 -27.88 -0.16 -0.37 16 5 C 0.14 1.62 7.38 -154.00 -1.14 0.49 16 6 N -0.26 -4.13 12.17 32.99 0.40 -3.73 16 7 N -0.29 -5.12 11.60 30.68 0.36 -4.76 16 8 C 0.18 2.84 8.20 -88.34 -0.72 2.12 16 9 S 0.11 1.87 21.40 -107.50 -2.30 -0.43 16 10 C -0.14 -2.57 5.72 36.01 0.21 -2.36 16 11 C 0.45 10.64 7.80 -10.98 -0.09 10.55 16 12 O -0.59 -15.57 15.44 5.55 0.09 -15.48 16 13 N -0.55 -13.77 5.29 -10.96 -0.06 -13.82 16 14 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 15 H 0.11 3.03 7.16 -52.48 -0.38 2.66 16 16 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 17 N -0.89 -24.07 13.05 55.50 0.72 -23.35 16 18 Si 0.93 20.71 29.55 -169.99 -5.02 15.68 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 22 N -0.31 -3.77 3.81 -9.93 -0.04 -3.81 16 23 N -0.58 -4.79 10.41 60.35 0.63 -4.16 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 1.94 8.14 -51.92 -0.42 1.52 16 32 H 0.11 1.92 8.14 -51.91 -0.42 1.50 16 33 H 0.40 9.61 7.90 -40.82 -0.32 9.29 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.37 2.22 9.21 -181.37 -1.67 0.55 16 36 H 0.37 1.95 8.85 -181.37 -1.60 0.34 16 LS Contribution 336.53 15.07 5.07 5.07 Total: -1.00 -33.86 336.53 -8.25 -42.12 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -6.91 Total: 5.63 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -0.81 Total: 4.53 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 2.01 Total: -53.63 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.29 Total: -18.98 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.30 Total: -0.43 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.86 -8.25 -42.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307308657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.659 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds