Wall clock time and date at job start Tue Mar 31 2020 03:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00486 * 2 1 4 4 C 1.53000 * 109.47669 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47025 * 180.02562 * 4 3 2 6 6 N 1.30290 * 126.34086 * 89.98185 * 5 4 3 7 7 N 1.28524 * 110.08135 * 179.97438 * 6 5 4 8 8 C 1.31284 * 109.85398 * 359.97438 * 7 6 5 9 9 S 1.76209 * 126.48497 * 179.74060 * 8 7 6 10 10 C 1.80998 * 99.99789 * 0.02562 * 9 8 7 11 11 C 1.50704 * 109.47289 * 179.97438 * 10 9 8 12 12 O 1.21293 * 119.99584 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00135 * 179.97438 * 11 10 9 14 14 C 1.37094 * 119.99892 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99938 * 0.02562 * 14 13 11 16 16 C 1.38944 * 120.00237 * 180.02562 * 14 13 11 17 17 N 1.31416 * 119.99685 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00350 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46869 * 89.99785 * 18 16 14 20 20 H 1.48500 * 109.46916 * 209.99881 * 18 16 14 21 21 H 1.48498 * 109.46703 * 329.99821 * 18 16 14 22 22 N 1.36540 * 107.03385 * 359.97438 * 8 7 6 23 23 N 1.36593 * 127.14462 * 179.97438 * 22 8 7 24 24 H 1.09006 * 109.47036 * 59.99676 * 1 2 3 25 25 H 1.08994 * 109.47270 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46957 * 300.00251 * 1 2 3 27 27 H 1.09005 * 109.47080 * 59.99463 * 3 2 1 28 28 H 1.09005 * 109.47218 * 300.00258 * 3 2 1 29 29 H 1.09000 * 109.46785 * 59.99808 * 4 3 2 30 30 H 1.09000 * 109.46653 * 300.00278 * 4 3 2 31 31 H 1.08998 * 109.47424 * 300.00146 * 10 9 8 32 32 H 1.09005 * 109.47255 * 59.99890 * 10 9 8 33 33 H 0.97001 * 120.00029 * 0.02562 * 13 11 10 34 34 H 0.97001 * 119.99740 * 180.02562 * 17 16 14 35 35 H 1.00902 * 111.00484 * 90.02749 * 23 22 8 36 36 H 1.00900 * 111.00191 * 213.98563 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1484 2.5613 0.0013 6 7 4.4616 3.2665 1.0511 7 7 4.9642 4.3935 0.6918 8 6 4.9995 4.4685 -0.6185 9 16 5.5970 5.8226 -1.5747 10 6 6.0918 6.9501 -0.2481 11 6 6.6505 8.2154 -0.8464 12 8 6.7080 8.3425 -2.0513 13 7 7.0852 9.2061 -0.0427 14 6 7.5930 10.3574 -0.5870 15 1 7.6442 10.4706 -1.6599 16 6 8.0417 11.3786 0.2415 17 7 7.9798 11.2406 1.5469 18 14 8.7329 12.9475 -0.5002 19 1 7.6346 13.9272 -0.6979 20 1 9.7498 13.5223 0.4167 21 1 9.3637 12.6402 -1.8090 22 7 4.4807 3.3009 -1.1000 23 7 4.3242 2.9462 -2.4098 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8574 0.6435 -0.8891 30 1 3.8567 0.6438 0.8909 31 1 5.2245 7.1906 0.3667 32 1 6.8535 6.4732 0.3689 33 1 7.0389 9.1046 0.9209 34 1 8.2927 11.9537 2.1253 35 1 5.1433 2.4690 -2.7556 36 1 3.4972 2.3820 -2.5353 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001307308657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:28:26 Heat of formation + Delta-G solvation = -6.617336 kcal Electronic energy + Delta-G solvation = -21073.532675 eV Core-core repulsion = 17527.538368 eV Total energy + Delta-G solvation = -3545.994307 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 301.100 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -44.17626 -40.15351 -39.01914 -37.61342 -36.09159 -34.45632 -33.43184 -31.30098 -30.88819 -30.17712 -27.41942 -26.67877 -24.79503 -24.00831 -22.39148 -21.49327 -20.13314 -19.52225 -18.53474 -18.16910 -17.76218 -17.56966 -16.99084 -16.52540 -16.44704 -16.25486 -15.98473 -15.84898 -15.22669 -14.76333 -14.49879 -14.26368 -13.84678 -13.50915 -13.20286 -13.13934 -12.90435 -12.71050 -12.45271 -12.41576 -12.23375 -12.11216 -11.96512 -11.57254 -11.42913 -11.13769 -10.74604 -10.63359 -10.61415 -10.10889 -8.71684 -8.50987 -6.01425 -0.11745 0.35865 0.97677 1.08335 1.36689 1.43609 1.46711 1.56832 1.88187 2.28550 2.49368 3.02563 3.15044 3.21249 3.43662 3.85363 3.94531 4.01554 4.09961 4.17385 4.19909 4.39550 4.42041 4.49531 4.51176 4.55868 4.79399 4.84600 4.86240 5.38408 5.62834 5.89525 6.05403 6.31544 6.46070 7.02493 7.35185 7.41142 7.92719 8.65949 Molecular weight = 301.10amu Principal moments of inertia in cm(-1) A = 0.040653 B = 0.002465 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.598848 B =11354.233485 C =11691.499083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.070 3.930 4 C -0.023 4.023 5 C 0.162 3.838 6 N -0.303 5.303 7 N -0.322 5.322 8 C 0.166 3.834 9 S 0.109 5.891 10 C -0.128 4.128 11 C 0.454 3.546 12 O -0.617 6.617 13 N -0.555 5.555 14 C -0.337 4.337 15 H 0.087 0.913 16 C -0.011 4.011 17 N -0.916 5.916 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.269 1.269 22 N -0.302 5.302 23 N -0.582 5.582 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.399 0.601 34 H 0.280 0.720 35 H 0.382 0.618 36 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.198 -22.728 -4.289 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.008 4.008 4 C -0.063 4.063 5 C -0.110 4.110 6 N -0.143 5.143 7 N -0.168 5.168 8 C -0.209 4.209 9 S 0.336 5.664 10 C -0.280 4.280 11 C 0.239 3.761 12 O -0.505 6.505 13 N -0.191 5.191 14 C -0.466 4.466 15 H 0.105 0.895 16 C -0.212 4.212 17 N -0.556 5.556 18 Si 0.821 3.179 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.194 1.194 22 N -0.083 5.083 23 N -0.219 5.219 24 H 0.071 0.929 25 H 0.121 0.879 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.203 0.797 36 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -11.802 -21.386 -4.785 24.890 hybrid contribution -0.013 -0.430 0.797 0.906 sum -11.814 -21.816 -3.987 25.128 Atomic orbital electron populations 1.22968 0.79006 1.04225 1.00917 1.87792 1.21696 1.27133 1.95626 1.22340 0.91880 0.85228 1.01382 1.19914 0.93458 0.85282 1.07616 1.25697 1.04298 0.98362 0.82631 1.73875 1.14966 1.00421 1.25075 1.74819 1.20847 1.14135 1.06981 1.27277 1.04553 0.94052 0.95067 1.86372 1.74239 1.03061 1.02741 1.23497 1.06525 0.96408 1.01553 1.19564 0.84265 0.85323 0.86924 1.90530 1.62460 1.81991 1.15519 1.41808 1.53832 1.14273 1.09185 1.19763 1.39384 0.93532 0.93914 0.89469 1.26162 0.97029 1.02452 0.95537 1.69689 1.46643 1.35730 1.03492 0.84848 0.78160 0.76812 0.78046 1.19478 1.19585 1.19388 1.44955 1.47778 1.12065 1.03543 1.59655 1.12380 1.55020 0.94819 0.92881 0.87850 0.93641 0.93222 0.92071 0.86500 0.86602 0.86123 0.86049 0.76650 0.91032 0.79690 0.78770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.48 10.70 -148.98 -1.59 -7.07 16 3 C 0.07 0.91 5.92 71.98 0.43 1.33 16 4 C -0.02 -0.30 5.89 29.85 0.18 -0.13 16 5 C 0.16 3.59 7.38 137.63 1.02 4.61 16 6 N -0.30 -9.39 12.17 -49.53 -0.60 -9.99 16 7 N -0.32 -11.12 11.60 -56.85 -0.66 -11.78 16 8 C 0.17 5.10 8.20 179.55 1.47 6.57 16 9 S 0.11 3.66 21.40 -56.49 -1.21 2.45 16 10 C -0.13 -4.80 5.72 71.24 0.41 -4.39 16 11 C 0.45 21.79 7.80 87.66 0.68 22.47 16 12 O -0.62 -33.47 15.44 -3.07 -0.05 -33.52 16 13 N -0.56 -28.68 5.29 -306.98 -1.62 -30.31 16 14 C -0.34 -18.88 9.68 84.04 0.81 -18.07 16 15 H 0.09 5.14 7.16 -2.91 -0.02 5.12 16 16 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 17 N -0.92 -49.31 13.05 21.66 0.28 -49.02 16 18 Si 1.00 42.28 29.55 68.60 2.03 44.31 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 22 N -0.30 -6.78 3.81 -185.32 -0.71 -7.49 16 23 N -0.58 -8.01 10.41 37.02 0.39 -7.63 16 24 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 25 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.12 4.27 8.14 -2.40 -0.02 4.25 16 32 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 33 H 0.40 19.80 7.90 -92.71 -0.73 19.07 16 34 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 35 H 0.38 3.50 9.21 -210.56 -1.94 1.57 16 36 H 0.39 2.74 8.85 -210.56 -1.86 0.88 16 Total: -1.00 -73.60 336.53 -0.42 -74.01 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -3.38 Total: 22.28 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.71 Total: 13.75 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -2.92 Total: -116.21 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -1.64 Total: -40.59 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.21 Total: 2.45 kcal Total: -73.60 -0.42 -74.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001307308657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.395 kcal (2) G-P(sol) polarization free energy of solvation -73.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds