Wall clock time and date at job start Tue Mar 31 2020 03:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00026 * 2 1 4 4 H 1.48504 * 109.46962 * 269.99365 * 3 2 1 5 5 H 1.48501 * 109.47362 * 29.99491 * 3 2 1 6 6 H 1.48503 * 109.46892 * 149.99952 * 3 2 1 7 7 C 1.37877 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99987 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99928 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.52615 * 299.92309 * 9 7 2 11 11 C 1.53046 * 109.49551 * 60.00313 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31590 * 11 9 7 13 13 C 1.53186 * 109.31207 * 298.63381 * 12 11 9 14 14 N 1.46919 * 108.77954 * 54.63337 * 13 12 11 15 15 C 1.34778 * 120.63015 * 126.36862 * 14 13 12 16 16 O 1.21285 * 119.99937 * 180.02562 * 15 14 13 17 17 C 1.50703 * 119.99881 * 0.02562 * 15 14 13 18 18 S 1.81405 * 109.46953 * 179.97438 * 17 15 14 19 19 O 1.42091 * 108.57963 * 294.48996 * 18 17 15 20 20 O 1.42104 * 108.57545 * 65.51307 * 18 17 15 21 21 C 1.81398 * 101.92151 * 180.02562 * 18 17 15 22 22 C 1.53004 * 117.50071 * 253.74983 * 21 18 17 23 23 C 1.52992 * 117.50184 * 185.09189 * 21 18 17 24 24 C 1.46927 * 118.74179 * 306.39646 * 14 13 12 25 25 H 0.97006 * 119.99508 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46296 * 61.29678 * 11 9 7 27 27 H 1.09000 * 109.45696 * 301.33234 * 11 9 7 28 28 H 1.09004 * 109.49895 * 58.58445 * 12 11 9 29 29 H 1.08995 * 109.49246 * 178.67798 * 12 11 9 30 30 H 1.09002 * 109.58478 * 174.42871 * 13 12 11 31 31 H 1.09004 * 109.58514 * 294.70524 * 13 12 11 32 32 H 1.08999 * 109.46940 * 299.99847 * 17 15 14 33 33 H 1.08997 * 109.46815 * 60.00399 * 17 15 14 34 34 H 1.08999 * 115.54715 * 39.41766 * 21 18 17 35 35 H 1.09008 * 117.49558 * 359.97438 * 22 21 18 36 36 H 1.08999 * 117.50017 * 145.01258 * 22 21 18 37 37 H 1.09003 * 117.49926 * 214.98118 * 23 21 18 38 38 H 1.09004 * 117.49755 * 359.97334 * 23 21 18 39 39 H 1.09000 * 109.58699 * 173.39102 * 24 14 13 40 40 H 1.08997 * 109.58189 * 293.67304 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5582 0.8907 11 6 0.3714 -2.5811 -1.2493 12 6 -0.4190 -3.8915 -1.2337 13 6 0.5569 -5.0721 -1.2511 14 7 1.4997 -4.9229 -0.1342 15 6 1.6763 -5.9216 0.7534 16 8 2.4572 -5.7859 1.6714 17 6 0.9034 -7.2068 0.6052 18 16 1.3591 -8.3441 1.9431 19 8 2.7239 -8.7062 1.7843 20 8 0.9281 -7.7869 3.1772 21 6 0.3308 -9.7914 1.5711 22 6 -0.8816 -10.0463 2.4691 23 6 0.3508 -10.9483 2.5720 24 6 2.2459 -3.6640 -0.0029 25 1 -0.4850 0.8401 -0.0004 26 1 1.0003 -2.5469 -2.1388 27 1 -0.3211 -1.7394 -1.2617 28 1 -1.0296 -3.9375 -0.3319 29 1 -1.0626 -3.9384 -2.1121 30 1 0.0040 -6.0049 -1.1406 31 1 1.1031 -5.0808 -2.1944 32 1 -0.1648 -6.9962 0.6550 33 1 1.1394 -7.6639 -0.3558 34 1 0.2359 -10.0416 0.5145 35 1 -1.0609 -9.3445 3.2836 36 1 -1.7739 -10.4645 2.0032 37 1 0.2688 -11.9597 2.1739 38 1 0.9823 -10.8400 3.4539 39 1 2.8073 -3.6678 0.9314 40 1 2.9334 -3.5577 -0.8420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649903907.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:19 Heat of formation + Delta-G solvation = -78.865441 kcal Electronic energy + Delta-G solvation = -23032.009983 eV Core-core repulsion = 19554.130355 eV Total energy + Delta-G solvation = -3477.879628 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.82575 -37.51069 -37.00438 -36.84686 -35.94439 -33.66200 -31.60436 -31.01384 -29.54864 -25.16028 -24.66522 -23.75632 -23.00164 -21.80801 -20.29172 -18.87106 -18.48798 -17.79580 -16.90429 -16.43460 -16.21243 -16.15057 -15.42759 -14.87137 -14.85888 -14.55227 -13.80023 -13.68880 -13.42662 -13.11725 -12.77222 -12.62803 -12.23651 -12.12240 -12.10046 -12.02419 -11.91680 -11.50020 -11.46345 -11.17416 -10.99896 -10.91711 -10.78158 -10.62742 -10.36110 -10.02402 -9.99567 -9.72736 -9.47784 -8.90201 -8.43764 -8.07342 -6.05666 -4.12772 -0.19194 2.56602 2.68463 2.86515 3.16216 3.28304 3.35504 3.40119 3.66637 3.96854 4.19501 4.32988 4.36434 4.40757 4.46641 4.85491 4.99381 5.08038 5.14067 5.19327 5.26141 5.38213 5.49809 5.53645 5.65054 5.96238 6.23347 6.27451 6.37569 6.57162 6.67088 6.81298 7.06835 7.22992 7.64091 7.72479 7.88649 8.01351 8.23050 8.37054 8.90456 9.52438 11.00030 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.031266 B = 0.003452 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.322572 B = 8109.611389 C = 8406.254355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.039 3.961 10 H 0.032 0.968 11 C -0.114 4.114 12 C -0.136 4.136 13 C 0.104 3.896 14 N -0.589 5.589 15 C 0.535 3.465 16 O -0.540 6.540 17 C -0.651 4.651 18 S 2.482 3.518 19 O -0.919 6.919 20 O -0.917 6.917 21 C -0.683 4.683 22 C -0.128 4.128 23 C -0.124 4.124 24 C 0.114 3.886 25 H 0.261 0.739 26 H 0.037 0.963 27 H 0.098 0.902 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.159 0.841 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 -20.284 -2.328 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.020 3.980 10 H 0.050 0.950 11 C -0.152 4.152 12 C -0.175 4.175 13 C -0.019 4.019 14 N -0.320 5.320 15 C 0.320 3.680 16 O -0.419 6.419 17 C -0.780 4.780 18 S 2.658 3.342 19 O -0.916 6.916 20 O -0.914 6.914 21 C -0.790 4.790 22 C -0.166 4.166 23 C -0.162 4.162 24 C -0.007 4.007 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.176 0.824 33 H 0.173 0.827 34 H 0.176 0.824 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.231 -19.935 -1.196 20.414 hybrid contribution -0.340 0.786 -1.217 1.488 sum -4.571 -19.149 -2.414 19.834 Atomic orbital electron populations 1.69869 1.05919 1.26556 1.50431 1.24938 0.94883 0.99154 0.94841 0.86549 0.79959 0.83189 0.78057 1.20698 1.21216 1.19783 1.21058 0.93062 0.90149 1.51074 0.92348 1.19001 0.92952 0.91118 0.94948 0.95024 1.21656 0.99535 0.95359 0.98633 1.22028 0.97626 0.96615 1.01196 1.21856 0.91474 0.99343 0.89218 1.48186 1.41678 1.15683 1.26473 1.19022 0.82476 0.83666 0.82866 1.90827 1.37669 1.81145 1.32284 1.30775 1.12415 1.11900 1.22883 1.06439 0.75627 0.75942 0.76200 1.93568 1.29436 1.82516 1.86106 1.93577 1.83220 1.76260 1.38345 1.32416 1.18894 1.20561 1.07130 1.22940 0.91426 1.02577 0.99624 1.22783 1.01071 0.94616 0.97778 1.22166 0.95184 0.81237 1.02103 0.92930 0.94434 0.88423 0.92195 0.92206 0.91005 0.91389 0.82360 0.82719 0.82407 0.86010 0.86935 0.86790 0.87282 0.89801 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.69 11.31 55.43 0.63 -24.06 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -13.84 8.56 -34.44 -0.29 -14.14 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.04 0.95 2.25 -91.65 -0.21 0.74 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 11 C -0.11 -2.47 4.96 -26.68 -0.13 -2.60 16 12 C -0.14 -2.29 6.08 -26.61 -0.16 -2.45 16 13 C 0.10 1.50 6.34 -3.72 -0.02 1.47 16 14 N -0.59 -10.74 2.97 -172.77 -0.51 -11.25 16 15 C 0.53 9.69 7.72 -10.98 -0.08 9.61 16 16 O -0.54 -12.08 15.04 2.55 0.04 -12.04 16 17 C -0.65 -7.50 4.64 36.01 0.17 -7.33 16 18 S 2.48 31.73 4.35 -107.50 -0.47 31.26 16 19 O -0.92 -15.22 17.94 -59.52 -1.07 -16.29 16 20 O -0.92 -15.06 17.10 -59.53 -1.02 -16.07 16 21 C -0.68 -5.16 6.25 -26.73 -0.17 -5.33 16 22 C -0.13 -0.84 10.13 -26.70 -0.27 -1.11 16 23 C -0.12 -0.86 10.30 -26.70 -0.27 -1.13 16 24 C 0.11 2.45 5.66 -3.71 -0.02 2.43 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.10 2.42 6.04 -51.93 -0.31 2.10 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.74 5.93 -51.93 -0.31 0.44 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.16 1.31 7.69 -51.92 -0.40 0.91 16 33 H 0.15 1.14 7.94 -51.93 -0.41 0.73 16 34 H 0.16 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.12 0.88 7.58 -51.92 -0.39 0.49 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.95 7.00 -51.93 -0.36 1.59 16 40 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 337.42 15.07 5.08 5.08 Total: -1.00 -36.16 337.42 -9.86 -46.02 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.96 Total: -0.43 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -1.56 Total: -18.23 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.11 Total: -35.31 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -2.05 Total: -44.40 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 31.73 SS G_CDS: -0.47 Total: 31.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.16 -9.86 -46.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649903907.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.842 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds