Wall clock time and date at job start Tue Mar 31 2020 04:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35939 * 117.00087 * 2 1 4 4 C 1.36432 * 119.58264 * 359.97438 * 3 2 1 5 5 C 1.40529 * 119.69242 * 180.02562 * 4 3 2 6 6 C 1.40538 * 121.17830 * 179.97438 * 5 4 3 7 7 C 1.36121 * 119.67287 * 180.02562 * 6 5 4 8 8 C 1.39352 * 120.98507 * 0.02563 * 7 6 5 9 9 C 1.50699 * 119.50490 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47108 * 200.00089 * 9 8 7 11 11 C 1.52998 * 109.47367 * 80.00124 * 9 8 7 12 12 N 1.46503 * 109.47261 * 319.99856 * 9 8 7 13 13 C 1.36934 * 120.00269 * 205.00182 * 12 9 8 14 14 H 1.08004 * 119.99792 * 0.02562 * 13 12 9 15 15 C 1.38808 * 120.00316 * 179.97438 * 13 12 9 16 16 N 1.31615 * 120.00256 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99962 * 0.02562 * 15 13 12 18 18 H 1.48492 * 109.47171 * 89.99406 * 17 15 13 19 19 H 1.48501 * 109.47053 * 209.99888 * 17 15 13 20 20 H 1.48499 * 109.46781 * 329.99723 * 17 15 13 21 21 C 1.36111 * 120.98690 * 359.95792 * 8 7 6 22 22 C 1.40548 * 119.67486 * 359.76277 * 21 8 7 23 23 C 1.40521 * 121.17525 * 179.64245 * 22 21 8 24 24 C 1.36436 * 119.69295 * 180.30531 * 23 22 21 25 25 O 1.35940 * 119.58702 * 180.25282 * 24 23 22 26 26 C 1.42896 * 117.00090 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47071 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46815 * 299.99568 * 1 2 3 29 29 H 1.08991 * 109.47264 * 60.00124 * 1 2 3 30 30 H 1.07997 * 120.15893 * 359.97438 * 4 3 2 31 31 H 1.07996 * 120.16366 * 0.04244 * 6 5 4 32 32 H 1.07999 * 119.50248 * 180.02562 * 7 6 5 33 33 H 1.08999 * 109.47398 * 180.02562 * 11 9 8 34 34 H 1.09000 * 109.46978 * 300.00045 * 11 9 8 35 35 H 1.09000 * 109.47317 * 59.99881 * 11 9 8 36 36 H 0.96998 * 119.99650 * 25.00276 * 12 9 8 37 37 H 0.97004 * 120.00250 * 180.02562 * 16 15 13 38 38 H 1.08000 * 120.16379 * 180.02562 * 21 8 7 39 39 H 1.08002 * 120.15729 * 0.59008 * 23 22 21 40 40 H 1.09000 * 109.47356 * 179.97438 * 26 25 24 41 41 H 1.09008 * 109.47037 * 299.99750 * 26 25 24 42 42 H 1.09001 * 109.47562 * 59.99534 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2948 2.3500 -0.0005 5 6 1.9304 3.6033 -0.0011 6 6 1.1871 4.7961 -0.0022 7 6 1.8345 5.9935 -0.0032 8 6 3.2266 6.0564 -0.0037 9 6 3.9088 7.4002 -0.0055 10 1 4.9342 7.2866 -0.3572 11 6 3.9168 7.9699 1.4144 12 7 3.1861 8.3136 -0.8941 13 6 3.8390 9.3738 -1.4641 14 1 4.8868 9.5363 -1.2589 15 6 3.1545 10.2389 -2.3065 16 7 3.7819 11.2582 -2.8540 17 14 1.3423 9.9574 -2.6621 18 1 0.5225 10.6827 -1.6586 19 1 1.0205 10.4610 -4.0215 20 1 1.0434 8.5047 -2.5887 21 6 3.9793 4.9224 -0.0024 22 6 3.3467 3.6674 0.0047 23 6 4.0929 2.4766 -0.0013 24 6 3.4475 1.2746 -0.0005 25 8 4.1714 0.1240 -0.0010 26 6 5.5946 0.2530 -0.0018 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 0.2166 2.2886 -0.0014 31 1 0.1077 4.7628 -0.0019 32 1 1.2606 6.9084 -0.0036 33 1 4.4099 8.9421 1.4131 34 1 2.8914 8.0835 1.7662 35 1 4.4545 7.2904 2.0756 36 1 2.2452 8.1674 -1.0787 37 1 3.3034 11.8630 -3.4424 38 1 5.0574 4.9867 -0.0024 39 1 5.1723 2.5127 -0.0018 40 1 6.0492 -0.7377 -0.0016 41 1 5.9096 0.7976 -0.8920 42 1 5.9106 0.7975 0.8880 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000031947565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:52 Heat of formation + Delta-G solvation = -33.625113 kcal Electronic energy + Delta-G solvation = -23884.165171 eV Core-core repulsion = 20408.636454 eV Total energy + Delta-G solvation = -3475.528717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.97944 -40.22117 -39.53717 -37.82091 -35.56043 -34.00205 -33.27347 -31.31805 -30.49602 -29.36900 -28.19241 -28.08184 -25.82069 -24.17708 -23.66697 -22.84628 -21.78154 -19.97165 -19.29859 -19.07441 -18.02617 -17.08503 -16.86806 -16.71447 -16.43670 -16.18323 -15.71926 -15.64362 -15.32123 -15.16052 -14.70687 -14.58164 -14.18989 -14.07771 -13.84060 -13.64202 -13.41086 -13.06559 -12.89739 -12.76362 -12.63877 -12.48894 -12.34688 -12.13530 -12.01938 -11.95363 -11.74493 -11.53553 -11.13638 -10.95208 -10.72296 -9.35263 -8.83891 -8.71067 -8.02171 -5.35277 -0.45409 0.05326 1.05260 1.36289 1.39465 1.46517 1.93769 2.26681 2.29491 2.48063 3.09173 3.30150 3.52039 3.65927 3.81898 3.95963 4.04846 4.08578 4.19665 4.25504 4.37103 4.40677 4.41763 4.42211 4.49912 4.59918 4.61720 4.71516 4.74419 4.76138 4.86920 4.98751 5.02835 5.07762 5.21521 5.24290 5.42422 5.56494 5.59240 5.71800 5.80961 5.99535 6.05805 6.22464 6.53683 7.07475 7.83024 8.02838 9.19346 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.020338 B = 0.003528 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.377635 B = 7934.228854 C = 8656.042485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.102 3.898 4 C -0.173 4.173 5 C -0.061 4.061 6 C -0.102 4.102 7 C -0.121 4.121 8 C -0.080 4.080 9 C 0.206 3.794 10 H 0.055 0.945 11 C -0.150 4.150 12 N -0.749 5.749 13 C -0.227 4.227 14 H 0.060 0.940 15 C -0.063 4.063 16 N -0.984 5.984 17 Si 0.947 3.053 18 H -0.275 1.275 19 H -0.296 1.296 20 H -0.254 1.254 21 C -0.107 4.107 22 C -0.050 4.050 23 C -0.178 4.178 24 C 0.106 3.894 25 O -0.325 6.325 26 C 0.015 3.985 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.164 0.836 31 H 0.150 0.850 32 H 0.116 0.884 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.365 0.635 37 H 0.257 0.743 38 H 0.139 0.861 39 H 0.160 0.840 40 H 0.121 0.879 41 H 0.063 0.937 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 -26.213 9.110 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.057 3.943 4 C -0.191 4.191 5 C -0.061 4.061 6 C -0.120 4.120 7 C -0.139 4.139 8 C -0.081 4.081 9 C 0.099 3.901 10 H 0.073 0.927 11 C -0.210 4.210 12 N -0.394 5.394 13 C -0.358 4.358 14 H 0.078 0.922 15 C -0.254 4.254 16 N -0.634 5.634 17 Si 0.774 3.226 18 H -0.201 1.201 19 H -0.222 1.222 20 H -0.179 1.179 21 C -0.125 4.125 22 C -0.051 4.051 23 C -0.197 4.197 24 C 0.060 3.940 25 O -0.239 6.239 26 C -0.079 4.079 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.181 0.819 31 H 0.168 0.832 32 H 0.134 0.866 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.200 0.800 37 H 0.066 0.934 38 H 0.157 0.843 39 H 0.177 0.823 40 H 0.139 0.861 41 H 0.082 0.918 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.683 -26.486 9.059 28.382 hybrid contribution -0.781 0.981 -0.567 1.376 sum -5.464 -25.505 8.492 27.432 Atomic orbital electron populations 1.23396 0.76404 1.05725 1.02393 1.86129 1.23355 1.25823 1.88694 1.18155 0.89368 0.85757 1.01037 1.21046 1.01014 0.89738 1.07334 1.17957 0.92592 0.93738 1.01857 1.21113 1.00607 0.90580 0.99719 1.20751 0.94146 0.98444 1.00607 1.19879 0.94286 0.95106 0.98852 1.19357 0.94487 0.85714 0.90564 0.92728 1.22235 1.01532 1.00510 0.96693 1.42877 1.09765 1.30501 1.56218 1.19042 0.94876 1.01605 1.20275 0.92187 1.25439 1.02430 0.97460 1.00108 1.69871 1.37672 1.18605 1.37293 0.85520 0.81141 0.78750 0.77155 1.20100 1.22236 1.17868 1.20894 1.00295 0.90335 1.01017 1.17892 0.92744 0.93338 1.01097 1.21028 1.01163 0.89710 1.07751 1.18171 0.88808 0.86326 1.00688 1.86124 1.21112 1.28036 1.88636 1.23395 0.76512 1.05658 1.02353 0.86170 0.91429 0.91687 0.81866 0.83187 0.86634 0.94034 0.93060 0.91108 0.80009 0.93371 0.84284 0.82283 0.86063 0.91819 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.80 113.37 1.11 1.29 16 2 O -0.33 -7.18 10.25 -78.53 -0.80 -7.99 16 3 C 0.10 2.47 6.66 22.34 0.15 2.62 16 4 C -0.17 -3.83 8.73 22.41 0.20 -3.64 16 5 C -0.06 -1.61 5.74 -21.28 -0.12 -1.74 16 6 C -0.10 -2.68 9.77 22.34 0.22 -2.47 16 7 C -0.12 -3.78 8.94 22.05 0.20 -3.59 16 8 C -0.08 -2.67 4.92 -20.09 -0.10 -2.76 16 9 C 0.21 7.94 3.07 44.24 0.14 8.08 16 10 H 0.05 2.18 7.89 -2.39 -0.02 2.16 16 11 C -0.15 -5.17 9.47 71.98 0.68 -4.49 16 12 N -0.75 -35.35 4.87 -326.50 -1.59 -36.94 16 13 C -0.23 -13.00 10.41 84.03 0.87 -12.13 16 14 H 0.06 3.74 8.06 -2.91 -0.02 3.71 16 15 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 16 N -0.98 -63.49 13.97 21.65 0.30 -63.19 16 17 Si 0.95 45.80 27.74 68.60 1.90 47.70 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 20 H -0.25 -11.21 6.52 99.48 0.65 -10.57 16 21 C -0.11 -3.11 9.35 22.34 0.21 -2.90 16 22 C -0.05 -1.38 5.74 -21.28 -0.12 -1.50 16 23 C -0.18 -4.19 8.73 22.41 0.20 -3.99 16 24 C 0.11 2.60 6.66 22.34 0.15 2.75 16 25 O -0.33 -7.38 10.25 -78.54 -0.80 -8.18 16 26 C 0.01 0.20 9.80 113.37 1.11 1.31 16 27 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.68 7.63 -2.39 -0.02 0.66 16 29 H 0.06 0.69 7.63 -2.39 -0.02 0.67 16 30 H 0.16 2.60 6.18 -2.91 -0.02 2.58 16 31 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 32 H 0.12 3.68 6.87 -2.91 -0.02 3.66 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.37 16.60 3.88 -92.71 -0.36 16.24 16 37 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 38 H 0.14 3.50 8.00 -2.91 -0.02 3.48 16 39 H 0.16 2.91 6.18 -2.91 -0.02 2.89 16 40 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.06 0.78 7.63 -2.38 -0.02 0.77 16 42 H 0.07 0.77 7.63 -2.39 -0.02 0.75 16 Total: -1.00 -73.69 345.76 4.97 -68.71 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 0.62 Total: 26.32 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 5.35 Total: -26.43 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -1.29 Total: -100.13 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.61 Total: -16.17 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.90 Total: 47.70 kcal Total: -73.69 4.97 -68.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031947565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.088 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds