Wall clock time and date at job start Tue Mar 31 2020 04:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46491 * 120.00300 * 2 1 4 4 C 1.50704 * 109.47423 * 270.00347 * 3 2 1 5 5 H 1.08004 * 119.99926 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00438 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99725 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00133 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47395 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.46945 * 120.00017 * 8 6 4 11 11 H 1.48503 * 109.47115 * 239.99745 * 8 6 4 12 12 C 1.34776 * 119.99714 * 180.02562 * 2 1 3 13 13 O 1.21285 * 120.00254 * 179.97438 * 12 2 1 14 14 C 1.50706 * 119.99896 * 0.02562 * 12 2 1 15 15 N 1.46501 * 109.46826 * 179.97438 * 14 12 2 16 16 N 1.28737 * 125.33994 * 89.97579 * 15 14 12 17 17 N 1.28984 * 108.94425 * 180.02562 * 16 15 14 18 18 C 1.34048 * 107.26958 * 0.02562 * 17 16 15 19 19 C 1.48456 * 126.67677 * 179.97438 * 18 17 16 20 20 C 1.39304 * 120.11555 * 0.02695 * 19 18 17 21 21 C 1.38028 * 119.87957 * 180.02562 * 20 19 18 22 22 C 1.38321 * 120.11973 * 359.97361 * 21 20 19 23 23 C 1.38314 * 120.23657 * 0.29935 * 22 21 20 24 24 C 1.38038 * 120.11284 * 359.45022 * 23 22 21 25 25 N 1.28874 * 125.34493 * 270.31671 * 15 14 12 26 26 H 1.08994 * 109.47053 * 270.00246 * 1 2 3 27 27 H 1.09008 * 109.46527 * 29.99936 * 1 2 3 28 28 H 1.08997 * 109.47316 * 149.99536 * 1 2 3 29 29 H 1.09002 * 109.47502 * 29.99901 * 3 2 1 30 30 H 1.09000 * 109.47268 * 149.99881 * 3 2 1 31 31 H 0.97001 * 120.00328 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47295 * 60.00314 * 14 12 2 33 33 H 1.08996 * 109.47307 * 299.99630 * 14 12 2 34 34 H 1.07994 * 120.05851 * 0.03982 * 20 19 18 35 35 H 1.08007 * 119.94270 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.87964 * 180.02562 * 22 21 20 37 37 H 1.07993 * 119.94108 * 179.69952 * 23 22 21 38 38 H 1.07998 * 120.05753 * 180.28000 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2418 6 6 3.1270 2.8774 -1.6728 7 7 3.5544 3.6175 -0.6731 8 14 3.4389 3.4163 -3.4339 9 1 2.8618 2.4159 -4.3673 10 1 2.8019 4.7373 -3.6675 11 1 4.9016 3.5240 -3.6670 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 7 2.3373 -3.5859 -0.0027 16 7 2.8215 -4.1525 1.0470 17 7 3.6259 -5.0925 0.6820 18 6 3.6394 -5.1066 -0.6583 19 6 4.4226 -6.0203 -1.5276 20 6 5.2492 -6.9874 -0.9600 21 6 5.9756 -7.8340 -1.7729 22 6 5.8835 -7.7238 -3.1486 23 6 5.0687 -6.7617 -3.7173 24 6 4.3340 -5.9133 -2.9136 25 7 2.8261 -4.1478 -1.0544 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8901 -0.5139 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6086 2.0284 0.5138 30 1 3.1500 1.1383 0.5138 31 1 4.0313 4.4434 -0.8503 32 1 0.7590 -2.5295 -0.8920 33 1 0.7583 -2.5307 0.8880 34 1 5.3213 -7.0746 0.1139 35 1 6.6171 -8.5839 -1.3339 36 1 6.4533 -8.3886 -3.7809 37 1 5.0041 -6.6767 -4.7920 38 1 3.6945 -5.1654 -3.3587 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034651563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:15 Heat of formation + Delta-G solvation = 128.148608 kcal Electronic energy + Delta-G solvation = -23204.247252 eV Core-core repulsion = 19664.485978 eV Total energy + Delta-G solvation = -3539.761274 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.16515 -39.39085 -39.12030 -35.30692 -34.82243 -33.44861 -32.76587 -31.26400 -30.99906 -29.24896 -27.60929 -25.98233 -24.46980 -23.93890 -22.82516 -21.88010 -21.55446 -19.25995 -17.94698 -17.47630 -16.90293 -16.65374 -16.01239 -15.82701 -15.32301 -15.04235 -14.94234 -14.26040 -13.99390 -13.69875 -13.55020 -13.22476 -13.17632 -12.89693 -12.43061 -12.27631 -12.09718 -11.92433 -11.53012 -11.33708 -11.28936 -11.03979 -10.96316 -10.83735 -10.76740 -10.70636 -10.27430 -9.75794 -9.33931 -9.11412 -8.69330 -8.53825 -7.93860 -6.14901 -4.20535 0.72574 1.24124 1.36607 1.86436 2.48077 2.92193 3.23992 3.32307 3.35430 3.56415 3.70513 3.77157 4.21828 4.35429 4.60784 4.68555 4.74093 4.79476 4.93700 4.98090 5.20293 5.24960 5.34378 5.44489 5.46075 5.68817 5.73151 5.83252 5.88462 5.99598 6.09839 6.30540 6.32020 6.37347 6.74849 6.79553 7.22223 7.30614 7.79826 8.03986 8.08714 8.43067 8.58349 8.84200 9.45054 10.93445 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.003477 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.491590 B = 8050.907939 C = 9218.979280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.591 5.591 3 C 0.246 3.754 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.494 3.506 13 O -0.520 6.520 14 C 0.106 3.894 15 N -0.114 5.114 16 N -0.048 5.048 17 N -0.277 5.277 18 C 0.201 3.799 19 C -0.005 4.005 20 C -0.080 4.080 21 C -0.124 4.124 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.082 4.082 25 N -0.285 5.285 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 -19.615 -2.167 20.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.323 5.323 3 C 0.127 3.873 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.276 3.724 13 O -0.396 6.396 14 C -0.018 4.018 15 N -0.025 5.025 16 N -0.041 5.041 17 N -0.148 5.148 18 C -0.078 4.078 19 C -0.008 4.008 20 C -0.100 4.100 21 C -0.142 4.142 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.102 4.102 25 N -0.135 5.135 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.186 -19.052 -1.514 19.565 hybrid contribution 0.228 0.480 -1.378 1.477 sum -3.958 -18.572 -2.892 19.208 Atomic orbital electron populations 1.21808 0.80769 1.03217 1.01152 1.48135 1.06518 1.07186 1.70498 1.19416 0.92662 0.77270 0.97941 1.21422 1.37046 1.06508 0.92039 0.92274 1.24942 0.95138 0.96320 0.97642 1.69935 1.38062 1.14333 1.30784 0.86413 0.78213 0.78352 0.84292 1.19735 1.20823 1.20791 1.19907 0.88342 0.84617 0.79503 1.90798 1.13210 1.86393 1.49160 1.22297 0.89073 0.82110 1.08324 1.49387 1.29064 1.23343 1.00749 1.78878 1.07124 1.03916 1.14189 1.75946 1.14590 1.13847 1.10453 1.23528 0.98421 0.96061 0.89799 1.17284 0.97489 0.94852 0.91197 1.21207 0.94457 0.93485 1.00889 1.21086 0.99860 0.99629 0.93602 1.21306 0.98152 0.97996 0.95152 1.21096 0.97158 0.95786 1.00053 1.21252 0.98461 0.98593 0.91884 1.74855 1.13919 1.09810 1.14961 0.92830 0.89845 0.92409 0.94321 0.93647 0.92596 0.84152 0.84033 0.84703 0.85361 0.85729 0.85366 0.84874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.24 59.85 0.61 1.58 16 2 N -0.59 -11.45 2.86 -182.95 -0.52 -11.97 16 3 C 0.25 6.15 5.16 -5.20 -0.03 6.12 16 4 C -0.53 -14.63 9.39 -34.44 -0.32 -14.95 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.49 9.69 7.74 -10.98 -0.09 9.61 16 13 O -0.52 -13.19 16.01 5.55 0.09 -13.10 16 14 C 0.11 1.45 5.63 -5.19 -0.03 1.42 16 15 N -0.11 -1.93 3.48 -11.67 -0.04 -1.97 16 16 N -0.05 -0.86 13.23 60.35 0.80 -0.06 16 17 N -0.28 -4.89 12.23 32.15 0.39 -4.49 16 18 C 0.20 3.38 7.94 -156.30 -1.24 2.14 16 19 C -0.01 -0.07 5.88 -104.89 -0.62 -0.69 16 20 C -0.08 -0.94 9.70 -39.26 -0.38 -1.32 16 21 C -0.12 -1.15 10.03 -39.63 -0.40 -1.54 16 22 C -0.11 -0.93 10.04 -39.52 -0.40 -1.33 16 23 C -0.12 -1.19 10.04 -39.63 -0.40 -1.59 16 24 C -0.08 -1.00 9.70 -39.26 -0.38 -1.38 16 25 N -0.29 -4.97 11.85 32.17 0.38 -4.59 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 1.14 8.07 -51.92 -0.42 0.73 16 28 H 0.06 0.53 6.44 -51.93 -0.33 0.20 16 29 H 0.04 0.96 8.07 -51.93 -0.42 0.55 16 30 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 31 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.14 1.45 7.40 -51.93 -0.38 1.06 16 33 H 0.14 1.34 8.11 -51.93 -0.42 0.92 16 34 H 0.14 1.51 7.89 -52.49 -0.41 1.10 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 36 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.13 1.63 7.88 -52.49 -0.41 1.21 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -36.27 340.48 -6.24 -42.51 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.43 Total: -2.33 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.76 Total: -0.30 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 1.75 Total: -48.45 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.27 -6.24 -42.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034651563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.660 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds