Wall clock time and date at job start Tue Mar 31 2020 04:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47110 * 2 1 4 4 N 1.46495 * 109.47784 * 180.02562 * 3 2 1 5 5 C 1.36940 * 120.00326 * 264.30659 * 4 3 2 6 6 H 1.07993 * 120.00231 * 143.03687 * 5 4 3 7 7 C 1.38809 * 119.99455 * 323.03951 * 5 4 3 8 8 N 1.31620 * 120.00426 * 340.48169 * 7 5 4 9 9 Si 1.86802 * 119.99845 * 160.48136 * 7 5 4 10 10 H 1.48501 * 109.47076 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47186 * 120.00018 * 9 7 5 12 12 H 1.48503 * 109.47247 * 239.99693 * 9 7 5 13 13 C 1.46499 * 119.99988 * 84.29550 * 4 3 2 14 14 C 1.50702 * 109.46905 * 85.02922 * 13 4 3 15 15 C 1.35707 * 120.91191 * 264.60189 * 14 13 4 16 16 C 1.41185 * 119.79799 * 179.82021 * 15 14 13 17 17 O 1.21775 * 119.16049 * 180.23967 * 16 15 14 18 18 O 1.34191 * 121.67968 * 0.45128 * 16 15 14 19 19 C 1.35006 * 121.47408 * 359.78821 * 18 16 15 20 20 C 1.38910 * 120.78395 * 179.97438 * 19 18 16 21 21 C 1.37911 * 119.81888 * 180.02562 * 20 19 18 22 22 C 1.50701 * 119.66782 * 179.97438 * 21 20 19 23 23 C 1.38765 * 120.67114 * 359.97438 * 21 20 19 24 24 C 1.36654 * 120.49458 * 0.02697 * 23 21 20 25 25 C 1.39827 * 119.72266 * 359.95546 * 24 23 21 26 26 H 1.08996 * 109.47424 * 60.00267 * 1 2 3 27 27 H 1.08999 * 109.46766 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47432 * 299.99534 * 1 2 3 29 29 H 1.08997 * 109.47498 * 240.00337 * 2 1 3 30 30 H 1.08996 * 109.47424 * 119.99733 * 2 1 3 31 31 H 1.09009 * 109.47103 * 59.99863 * 3 2 1 32 32 H 1.09007 * 109.47022 * 300.00495 * 3 2 1 33 33 H 0.97001 * 120.00144 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47682 * 205.02823 * 13 4 3 35 35 H 1.09004 * 109.47462 * 325.03017 * 13 4 3 36 36 H 1.07996 * 120.10072 * 0.02562 * 15 14 13 37 37 H 1.08003 * 120.09571 * 0.04227 * 20 19 18 38 38 H 1.08997 * 109.47208 * 89.99753 * 22 21 20 39 39 H 1.09000 * 109.47712 * 209.99845 * 22 21 20 40 40 H 1.09004 * 109.47018 * 330.00067 * 22 21 20 41 41 H 1.07997 * 119.74925 * 179.97438 * 23 21 20 42 42 H 1.07999 * 120.13767 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.1901 1.5602 1.1792 6 1 5.1074 1.0100 1.3280 7 6 3.7056 2.3865 2.1837 8 7 2.8368 3.3325 1.8960 9 14 4.2865 2.1560 3.9441 10 1 5.2566 1.0332 4.0022 11 1 4.9431 3.4016 4.4159 12 1 3.1221 1.8504 4.8136 13 6 4.2369 1.3168 -1.2634 14 6 4.3810 2.6761 -1.8980 15 6 3.5017 3.1026 -2.8396 16 6 3.6567 4.3821 -3.4160 17 8 2.8585 4.7548 -4.2567 18 8 4.6638 5.1962 -3.0642 19 6 5.5750 4.8305 -2.1375 20 6 6.6121 5.6845 -1.7845 21 6 7.5322 5.2904 -0.8358 22 6 8.6563 6.2194 -0.4558 23 6 7.4335 4.0471 -0.2276 24 6 6.4214 3.1910 -0.5597 25 6 5.4780 3.5718 -1.5189 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 2.4985 3.9102 2.5980 34 1 5.2251 0.8993 -1.0706 35 1 3.6891 0.6576 -1.9368 36 1 2.6839 2.4666 -3.1446 37 1 6.6975 6.6546 -2.2514 38 1 8.3406 6.8513 0.3743 39 1 9.5260 5.6343 -0.1567 40 1 8.9155 6.8447 -1.3102 41 1 8.1625 3.7535 0.5131 42 1 6.3498 2.2249 -0.0824 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058343998.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:28 Heat of formation + Delta-G solvation = -26.390745 kcal Electronic energy + Delta-G solvation = -25015.601198 eV Core-core repulsion = 21540.386187 eV Total energy + Delta-G solvation = -3475.215011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 301.146 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.26990 -38.57046 -36.96801 -36.61748 -34.43904 -32.63332 -31.65037 -30.84596 -30.23102 -27.16548 -26.44592 -25.78804 -23.59154 -22.82552 -22.14846 -21.15827 -19.93391 -18.36656 -17.69788 -16.92545 -16.67803 -16.13999 -15.20808 -14.74863 -14.42303 -14.34134 -14.24472 -13.98284 -13.65545 -13.52941 -13.41910 -13.21272 -12.52543 -12.48855 -12.36168 -12.13769 -11.76279 -11.50397 -11.37754 -11.28942 -11.08415 -11.00260 -10.89097 -10.80813 -10.56950 -10.21685 -10.15785 -9.72823 -9.65810 -9.53759 -8.78538 -8.34862 -7.77190 -6.94267 -6.12941 -3.63929 0.79786 1.54469 2.08935 2.98790 3.16121 3.25730 3.26821 3.40891 4.14034 4.25940 4.75130 4.91991 4.95074 5.03302 5.12511 5.22790 5.30290 5.43391 5.55180 5.62913 5.74236 5.79896 5.84370 5.88388 5.93343 6.08393 6.10490 6.24078 6.29440 6.36122 6.41582 6.50256 6.50523 6.66681 6.73847 6.76111 6.77873 6.95873 7.06270 7.09651 7.45138 7.55987 7.78867 8.08801 8.16492 8.81642 9.41448 9.99454 10.84715 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.011140 B = 0.006987 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.873112 B = 4006.601886 C = 5844.048387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.143 3.857 4 N -0.559 5.559 5 C -0.257 4.257 6 H 0.070 0.930 7 C 0.019 3.981 8 N -0.864 5.864 9 Si 0.900 3.100 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.161 3.839 14 C 0.038 3.962 15 C -0.298 4.298 16 C 0.514 3.486 17 O -0.499 6.499 18 O -0.282 6.282 19 C 0.143 3.857 20 C -0.150 4.150 21 C -0.044 4.044 22 C -0.113 4.113 23 C -0.152 4.152 24 C -0.025 4.025 25 C -0.128 4.128 26 H 0.047 0.953 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.027 0.973 33 H 0.261 0.739 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.148 0.852 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 -1.228 -2.557 8.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.018 3.982 4 N -0.276 5.276 5 C -0.387 4.387 6 H 0.088 0.912 7 C -0.185 4.185 8 N -0.502 5.502 9 Si 0.729 3.271 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.210 1.210 13 C 0.035 3.965 14 C 0.031 3.969 15 C -0.320 4.320 16 C 0.366 3.634 17 O -0.391 6.391 18 O -0.194 6.194 19 C 0.098 3.902 20 C -0.169 4.169 21 C -0.045 4.045 22 C -0.170 4.170 23 C -0.170 4.170 24 C -0.044 4.044 25 C -0.129 4.129 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.165 0.835 37 H 0.150 0.850 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.144 0.856 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.290 -0.784 -2.870 7.873 hybrid contribution -0.111 0.142 1.086 1.101 sum 7.179 -0.643 -1.784 7.425 Atomic orbital electron populations 1.21691 0.97217 1.00163 1.01307 1.22033 0.93998 1.00948 1.00837 1.21096 0.82248 0.92616 1.02238 1.44333 1.01586 1.81729 0.99933 1.19242 1.08952 1.20462 0.90021 0.91225 1.25363 0.98901 0.94372 0.99895 1.69992 1.31364 1.16306 1.32569 0.86268 0.78605 0.77999 0.84277 1.19607 1.21235 1.21050 1.20402 0.97940 0.89132 0.89015 1.22808 0.88382 0.99631 0.86072 1.21935 1.06536 0.97605 1.05922 1.19287 0.78120 0.84327 0.81622 1.90876 1.38491 1.76506 1.33180 1.83428 1.35617 1.49085 1.51294 1.19076 0.88936 0.93180 0.89007 1.20177 0.94834 1.00038 1.01831 1.19753 0.95440 0.94938 0.94352 1.20814 0.95835 0.98352 1.01957 1.20719 1.00333 0.94129 1.01818 1.21082 0.90572 1.00605 0.92114 1.19050 0.98786 0.93869 1.01152 0.93427 0.93924 0.93071 0.93806 0.92330 0.88489 0.95475 0.92866 0.91450 0.92261 0.83467 0.84979 0.90823 0.91235 0.91474 0.85627 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 37.16 0.37 -1.92 16 2 C -0.14 -2.50 6.25 -26.73 -0.17 -2.67 16 3 C 0.14 3.07 5.24 -4.04 -0.02 3.05 16 4 N -0.56 -12.06 2.42 -174.61 -0.42 -12.48 16 5 C -0.26 -5.95 8.04 -15.06 -0.12 -6.08 16 6 H 0.07 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.02 0.45 4.95 -17.43 -0.09 0.36 16 8 N -0.86 -22.66 11.39 55.49 0.63 -22.02 16 9 Si 0.90 19.35 29.60 -169.99 -5.03 14.31 16 10 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 C 0.16 2.97 5.39 -5.19 -0.03 2.94 16 14 C 0.04 0.74 5.66 -102.15 -0.58 0.16 16 15 C -0.30 -5.94 9.60 -39.37 -0.38 -6.32 16 16 C 0.51 11.11 7.89 31.85 0.25 11.36 16 17 O -0.50 -11.78 17.91 -19.58 -0.35 -12.13 16 18 O -0.28 -5.85 9.82 -20.66 -0.20 -6.06 16 19 C 0.14 2.71 6.76 -38.45 -0.26 2.45 16 20 C -0.15 -2.39 9.64 -39.45 -0.38 -2.77 16 21 C -0.04 -0.63 5.88 -104.55 -0.62 -1.24 16 22 C -0.11 -1.15 9.99 36.01 0.36 -0.79 16 23 C -0.15 -2.28 9.61 -39.96 -0.38 -2.66 16 24 C -0.03 -0.44 9.03 -39.56 -0.36 -0.80 16 25 C -0.13 -2.45 5.87 -105.04 -0.62 -3.07 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.10 2.38 5.48 -51.92 -0.28 2.10 16 32 H 0.03 0.59 8.11 -51.92 -0.42 0.17 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.07 1.15 6.76 -51.93 -0.35 0.79 16 35 H 0.06 1.00 7.98 -51.93 -0.41 0.58 16 36 H 0.15 2.75 8.06 -52.49 -0.42 2.33 16 37 H 0.13 1.82 8.06 -52.48 -0.42 1.39 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 41 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.15 2.52 5.25 -52.49 -0.28 2.24 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -28.25 350.81 -9.02 -37.27 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.92 Total: 3.81 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.01 Total: -7.99 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.21 Total: -34.51 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.55 Total: -18.18 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.25 -9.02 -37.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058343998.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.878 kcal (2) G-P(sol) polarization free energy of solvation -28.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds