Wall clock time and date at job start Tue Mar 31 2020 04:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35906 * 116.99840 * 2 1 4 4 C 1.38731 * 120.05361 * 179.97438 * 3 2 1 5 5 C 1.38145 * 119.94222 * 179.97438 * 4 3 2 6 6 C 1.38267 * 120.05261 * 359.97438 * 5 4 3 7 7 C 1.50709 * 119.94017 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47185 * 20.12982 * 7 6 5 9 9 N 1.46496 * 109.47117 * 140.13223 * 7 6 5 10 10 C 1.36938 * 119.99941 * 273.77130 * 9 7 6 11 11 H 1.07997 * 120.00245 * 354.48952 * 10 9 7 12 12 C 1.38816 * 119.99947 * 174.49362 * 10 9 7 13 13 N 1.31616 * 119.99933 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99744 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47090 * 90.00334 * 14 12 10 16 16 H 1.48503 * 109.46748 * 209.99884 * 14 12 10 17 17 H 1.48497 * 109.47367 * 329.99900 * 14 12 10 18 18 C 1.50697 * 109.46946 * 260.13162 * 7 6 5 19 19 C 1.38244 * 119.97488 * 105.88059 * 18 7 6 20 20 C 1.38205 * 120.02259 * 179.97438 * 19 18 7 21 21 C 1.38461 * 119.97701 * 0.02562 * 20 19 18 22 22 F 1.35099 * 120.02399 * 179.97438 * 21 20 19 23 23 C 1.38453 * 119.94641 * 0.24701 * 21 20 19 24 24 C 1.38206 * 119.97503 * 359.47542 * 23 21 20 25 25 C 1.38262 * 120.11398 * 0.27580 * 6 5 4 26 26 C 1.38141 * 120.05438 * 359.45099 * 25 6 5 27 27 H 1.09003 * 109.47191 * 299.99746 * 1 2 3 28 28 H 1.09001 * 109.47374 * 60.00018 * 1 2 3 29 29 H 1.09002 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.02928 * 359.95638 * 4 3 2 31 31 H 1.08001 * 119.97444 * 180.02562 * 5 4 3 32 32 H 0.97001 * 120.00499 * 93.76313 * 9 7 6 33 33 H 0.97008 * 119.99729 * 179.97438 * 13 12 10 34 34 H 1.07995 * 119.98769 * 0.02950 * 19 18 7 35 35 H 1.08000 * 120.01018 * 180.02562 * 20 19 18 36 36 H 1.08003 * 120.01150 * 179.74376 * 23 21 20 37 37 H 1.07999 * 119.98485 * 180.29590 * 24 23 21 38 38 H 1.08003 * 119.97345 * 179.70297 * 25 6 5 39 39 H 1.08007 * 120.02869 * 180.27073 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6758 -0.0016 7 6 3.9859 5.0186 -0.0028 8 1 5.0107 4.9040 -0.3558 9 7 3.2634 5.9340 -0.8895 10 6 3.5509 5.9600 -2.2281 11 1 4.3694 5.3719 -2.6162 12 6 2.7903 6.7423 -3.0862 13 7 1.7926 7.4587 -2.6134 14 14 3.1830 6.7783 -4.9122 15 1 2.4156 5.7119 -5.6046 16 1 2.8084 8.1013 -5.4730 17 1 4.6369 6.5502 -5.1105 18 6 3.9964 5.5783 1.3964 19 6 5.1691 5.5865 2.1283 20 6 5.1799 6.0999 3.4114 21 6 4.0155 6.6058 3.9639 22 9 4.0249 7.1075 5.2183 23 6 2.8403 6.5918 3.2320 24 6 2.8331 6.0831 1.9470 25 6 1.9209 3.6048 0.0031 26 6 1.2914 2.3751 -0.0021 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 4.0208 0.3800 0.0017 31 1 5.1344 2.5752 0.0000 32 1 2.5814 6.5217 -0.5284 33 1 1.2613 8.0057 -3.2131 34 1 6.0774 5.1923 1.6969 35 1 6.0964 6.1066 3.9828 36 1 1.9305 6.9824 3.6636 37 1 1.9176 6.0766 1.3742 38 1 1.3340 4.5114 0.0067 39 1 0.2128 2.3201 -0.0028 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071892997.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:36 Heat of formation + Delta-G solvation = -33.653465 kcal Electronic energy + Delta-G solvation = -23684.737824 eV Core-core repulsion = 20085.747573 eV Total energy + Delta-G solvation = -3598.990251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.122 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.84455 -41.15434 -40.19790 -38.42772 -36.37656 -33.92818 -32.17148 -31.80177 -31.11690 -30.57723 -28.19413 -26.63689 -25.10493 -23.82194 -23.30820 -22.81798 -21.27848 -19.38091 -19.01572 -18.55601 -17.36497 -16.91612 -16.84310 -16.71625 -16.56659 -16.51682 -15.95059 -15.55344 -15.20849 -14.99067 -14.56471 -14.42847 -14.26015 -14.10896 -13.78241 -13.57574 -13.34553 -13.03705 -12.86244 -12.75068 -12.50109 -12.47166 -12.12041 -11.97815 -11.79462 -11.64123 -11.54593 -10.98424 -9.99418 -9.81496 -9.51811 -9.09504 -8.83592 -7.92136 -5.20459 0.19439 0.34753 0.53204 0.63611 1.48563 1.49410 1.56978 2.44492 2.55720 2.69677 2.93584 3.33282 3.42709 3.76694 3.87635 3.98349 4.01255 4.03150 4.17407 4.33560 4.36948 4.38570 4.42438 4.50981 4.62245 4.64628 4.70467 4.80164 4.87299 5.05701 5.10402 5.19375 5.23179 5.33057 5.42512 5.54368 5.55505 5.66996 5.91945 5.94541 5.99904 6.29636 6.52726 7.37135 8.07474 8.32981 9.30736 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.007654 B = 0.006614 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.164495 B = 4232.720188 C = 6940.522647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.105 3.895 4 C -0.160 4.160 5 C -0.081 4.081 6 C -0.126 4.126 7 C 0.251 3.749 8 H 0.074 0.926 9 N -0.721 5.721 10 C -0.231 4.231 11 H 0.076 0.924 12 C -0.068 4.068 13 N -0.966 5.966 14 Si 0.963 3.037 15 H -0.293 1.293 16 H -0.298 1.298 17 H -0.268 1.268 18 C -0.087 4.087 19 C -0.083 4.083 20 C -0.147 4.147 21 C 0.075 3.925 22 F -0.147 7.147 23 C -0.156 4.156 24 C -0.088 4.088 25 C -0.065 4.065 26 C -0.217 4.217 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.376 0.624 33 H 0.249 0.751 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -10.799 11.195 15.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.248 6.248 3 C 0.060 3.940 4 C -0.178 4.178 5 C -0.099 4.099 6 C -0.129 4.129 7 C 0.142 3.858 8 H 0.092 0.908 9 N -0.360 5.360 10 C -0.362 4.362 11 H 0.094 0.906 12 C -0.261 4.261 13 N -0.617 5.617 14 Si 0.793 3.207 15 H -0.220 1.220 16 H -0.225 1.225 17 H -0.193 1.193 18 C -0.088 4.088 19 C -0.102 4.102 20 C -0.165 4.165 21 C 0.056 3.944 22 F -0.126 7.126 23 C -0.175 4.175 24 C -0.107 4.107 25 C -0.083 4.083 26 C -0.236 4.236 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.209 0.791 33 H 0.058 0.942 34 H 0.175 0.825 35 H 0.178 0.822 36 H 0.162 0.838 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.956 -10.989 11.060 15.868 hybrid contribution -0.999 0.891 -0.921 1.625 sum 1.957 -10.098 10.139 14.443 Atomic orbital electron populations 1.23269 0.77033 1.05381 1.01717 1.85996 1.22988 1.26690 1.89097 1.19124 0.92862 0.84089 0.97875 1.20585 0.91315 0.99014 1.06926 1.21065 1.00726 0.90471 0.97686 1.20832 0.94156 0.96617 1.01311 1.18190 0.95317 0.86003 0.86282 0.90846 1.42588 1.45082 1.44093 1.04282 1.19546 1.10606 1.21264 0.84829 0.90573 1.25410 0.98369 1.00758 1.01535 1.69796 1.22933 1.33882 1.35053 0.85293 0.78001 0.76134 0.81286 1.22022 1.22526 1.19312 1.20238 0.94123 0.98445 0.95979 1.21134 0.98009 0.97894 0.93140 1.21334 0.97856 1.00670 0.96659 1.17837 0.95686 1.00511 0.80392 1.91458 1.97344 1.85479 1.38333 1.21219 0.98170 1.03031 0.95084 1.20861 0.98607 0.97009 0.94214 1.20714 0.94868 0.96542 0.96183 1.21322 1.00459 0.92245 1.09543 0.92136 0.92828 0.85821 0.83719 0.83313 0.79099 0.94199 0.82544 0.82192 0.83841 0.86420 0.87814 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.33 -9.14 10.50 -92.49 -0.97 -10.11 16 3 C 0.11 3.26 6.69 22.50 0.15 3.41 16 4 C -0.16 -4.65 9.99 22.37 0.22 -4.43 16 5 C -0.08 -2.44 9.66 22.25 0.22 -2.22 16 6 C -0.13 -4.47 4.91 -19.85 -0.10 -4.57 16 7 C 0.25 9.30 2.70 43.50 0.12 9.41 16 8 H 0.07 2.61 7.73 -2.39 -0.02 2.59 16 9 N -0.72 -34.02 4.30 -330.09 -1.42 -35.44 16 10 C -0.23 -12.20 9.93 84.03 0.83 -11.36 16 11 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 12 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 13 N -0.97 -57.38 13.07 21.65 0.28 -57.10 16 14 Si 0.96 45.43 29.55 68.60 2.03 47.45 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C -0.09 -2.82 4.93 -19.86 -0.10 -2.92 16 19 C -0.08 -2.19 9.67 22.26 0.22 -1.97 16 20 C -0.15 -3.57 10.03 22.32 0.22 -3.35 16 21 C 0.07 2.07 7.30 22.37 0.16 2.23 16 22 F -0.15 -4.02 17.27 44.97 0.78 -3.24 16 23 C -0.16 -4.55 10.03 22.31 0.22 -4.33 16 24 C -0.09 -2.91 8.57 22.26 0.19 -2.72 16 25 C -0.06 -2.40 8.82 22.25 0.20 -2.20 16 26 C -0.22 -7.10 9.04 22.36 0.20 -6.90 16 27 H 0.06 1.08 7.67 -2.39 -0.02 1.06 16 28 H 0.05 1.05 7.66 -2.39 -0.02 1.03 16 29 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 31 H 0.15 3.57 8.04 -2.91 -0.02 3.54 16 32 H 0.38 19.08 6.43 -92.71 -0.60 18.49 16 33 H 0.25 14.51 8.31 -92.70 -0.77 13.74 16 34 H 0.16 3.21 7.99 -2.91 -0.02 3.19 16 35 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 36 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.12 4.18 6.31 -2.91 -0.02 4.17 16 38 H 0.10 4.22 6.85 -2.91 -0.02 4.20 16 39 H 0.13 3.81 6.30 -2.91 -0.02 3.79 16 Total: -1.00 -64.40 337.01 5.52 -58.88 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.48 Total: 33.30 kcal Atomic # 6 Polarization: -38.09 SS G_CDS: 4.34 Total: -33.75 kcal Atomic # 7 Polarization: -91.41 SS G_CDS: -1.14 Total: -92.54 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.97 Total: -10.11 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.78 Total: -3.24 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -64.40 5.52 -58.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071892997.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.227 kcal (2) G-P(sol) polarization free energy of solvation -64.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds