Wall clock time and date at job start Tue Mar 31 2020 04:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47602 * 2 1 4 4 C 1.36959 * 119.99686 * 264.68951 * 3 2 1 5 5 H 1.08006 * 119.99691 * 198.82749 * 4 3 2 6 6 C 1.38987 * 120.00085 * 18.83543 * 4 3 2 7 7 N 1.31400 * 120.00527 * 24.70314 * 6 4 3 8 8 Si 1.86802 * 119.99766 * 204.70258 * 6 4 3 9 9 H 1.48504 * 109.46813 * 89.99855 * 8 6 4 10 10 H 1.48496 * 109.47308 * 209.99831 * 8 6 4 11 11 H 1.48494 * 109.47225 * 330.00148 * 8 6 4 12 12 C 1.34774 * 120.00014 * 84.68540 * 3 2 1 13 13 O 1.21620 * 120.00097 * 184.04077 * 12 3 2 14 14 C 1.47438 * 120.00023 * 4.04877 * 12 3 2 15 15 C 1.36665 * 125.77988 * 174.04989 * 14 12 3 16 16 N 1.34838 * 106.82904 * 179.97438 * 15 14 12 17 17 C 1.46497 * 126.59761 * 179.97438 * 16 15 14 18 18 C 1.50692 * 109.47490 * 124.99863 * 17 16 15 19 19 C 1.38224 * 119.61783 * 124.72921 * 18 17 16 20 20 C 1.38628 * 119.16268 * 180.30472 * 19 18 17 21 21 C 1.38673 * 118.41966 * 359.97254 * 20 19 18 22 22 C 1.38180 * 119.16287 * 0.02562 * 21 20 19 23 23 N 1.31857 * 119.61869 * 305.00099 * 18 17 16 24 24 N 1.40210 * 106.81243 * 0.24065 * 16 15 14 25 25 N 1.28755 * 108.38629 * 359.58969 * 24 16 15 26 26 H 1.08999 * 109.46739 * 59.99890 * 1 2 3 27 27 H 1.08994 * 109.47490 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47102 * 300.00521 * 1 2 3 29 29 H 1.09009 * 109.47351 * 239.99794 * 2 1 3 30 30 H 1.09001 * 109.47434 * 119.99853 * 2 1 3 31 31 H 0.96990 * 120.00426 * 179.97438 * 7 6 4 32 32 H 1.08003 * 126.58604 * 0.02562 * 15 14 12 33 33 H 1.09000 * 109.46752 * 4.99719 * 17 16 15 34 34 H 1.09000 * 109.47185 * 245.00308 * 17 16 15 35 35 H 1.08001 * 120.41971 * 0.25911 * 19 18 17 36 36 H 1.08004 * 120.79407 * 180.02562 * 20 19 18 37 37 H 1.08005 * 120.41651 * 179.97438 * 21 20 19 38 38 H 1.08005 * 119.61618 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3502 1.9901 -1.1810 5 1 2.9814 2.8666 -1.1780 6 6 1.8745 1.4804 -2.3834 7 7 0.7713 0.7669 -2.4040 8 14 2.8036 1.8097 -3.9702 9 1 3.8000 0.7313 -4.1932 10 1 1.8475 1.8428 -5.1059 11 1 3.5021 3.1165 -3.8728 12 6 2.1412 2.0526 1.1622 13 8 2.4761 3.2217 1.1566 14 6 1.8696 1.3696 2.4403 15 6 2.0659 1.8971 3.6856 16 7 1.6948 0.9521 4.5729 17 6 1.7294 1.0634 6.0332 18 6 0.3623 0.7645 6.5924 19 6 0.2160 -0.2243 7.5471 20 6 -1.0468 -0.4958 8.0504 21 6 -2.1201 0.2412 7.5728 22 6 -1.8969 1.2143 6.6175 23 7 -0.6813 1.4455 6.1613 24 7 1.2752 -0.1600 3.8292 25 7 1.3863 0.1228 2.5780 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 0.4392 0.4115 -3.2431 32 1 2.4448 2.8822 3.9151 33 1 2.0234 2.0748 6.3136 34 1 2.4500 0.3511 6.4350 35 1 1.0746 -0.7788 7.8961 36 1 -1.1913 -1.2624 8.7974 37 1 -3.1180 0.0562 7.9422 38 1 -2.7274 1.7928 6.2407 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079733527.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:04 Heat of formation + Delta-G solvation = 131.350771 kcal Electronic energy + Delta-G solvation = -23875.459980 eV Core-core repulsion = 20335.837562 eV Total energy + Delta-G solvation = -3539.622418 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -41.59397 -40.37882 -38.07987 -35.00274 -34.84449 -32.70554 -31.93208 -31.51060 -30.03090 -29.14040 -27.45687 -25.06523 -23.86168 -23.06018 -22.49459 -21.74992 -21.25570 -19.33380 -17.43088 -17.13233 -16.58568 -16.29286 -15.93823 -15.60930 -15.10792 -14.73792 -14.44256 -14.02352 -13.77896 -13.71355 -13.52651 -13.23268 -12.90239 -12.65363 -12.52152 -12.09822 -11.80999 -11.44157 -11.12545 -10.96458 -10.61734 -10.50258 -10.29324 -10.19785 -10.05363 -9.96768 -9.68508 -9.36240 -9.23829 -8.85171 -8.55302 -8.39066 -7.55735 -6.20591 -3.74698 0.69992 0.98706 1.71457 2.46315 2.61218 3.25177 3.30449 3.35522 3.50422 3.82068 4.16556 4.30619 4.42823 4.51032 4.60517 4.74866 4.81877 4.90974 4.96998 5.02148 5.21492 5.23629 5.39057 5.55635 5.69085 5.80879 5.84157 5.90670 6.34731 6.38443 6.72996 6.82978 6.97185 7.05547 7.26453 7.48769 7.53100 7.69816 8.15572 8.19310 8.55421 8.73161 9.25816 9.50345 10.09685 10.69721 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.031025 B = 0.003397 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.288885 B = 8241.101522 C = 8595.751439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 N -0.414 5.414 4 C -0.307 4.307 5 H 0.104 0.896 6 C 0.035 3.965 7 N -0.850 5.850 8 Si 0.922 3.078 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.509 3.491 13 O -0.597 6.597 14 C -0.058 4.058 15 C 0.071 3.929 16 N -0.363 5.363 17 C 0.181 3.819 18 C 0.110 3.890 19 C -0.151 4.151 20 C -0.075 4.075 21 C -0.168 4.168 22 C 0.105 3.895 23 N -0.464 5.464 24 N -0.088 5.088 25 N -0.200 5.200 26 H 0.111 0.889 27 H 0.028 0.972 28 H 0.020 0.980 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.268 0.732 32 H 0.196 0.804 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.507 -3.917 20.585 21.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.001 4.001 3 N -0.129 5.129 4 C -0.435 4.435 5 H 0.121 0.879 6 C -0.170 4.170 7 N -0.488 5.488 8 Si 0.748 3.252 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.193 1.193 12 C 0.296 3.704 13 O -0.482 6.482 14 C -0.196 4.196 15 C -0.084 4.084 16 N -0.150 5.150 17 C 0.059 3.941 18 C -0.029 4.029 19 C -0.172 4.172 20 C -0.101 4.101 21 C -0.188 4.188 22 C -0.052 4.052 23 N -0.173 5.173 24 N -0.067 5.067 25 N -0.073 5.073 26 H 0.129 0.871 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.212 0.788 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.154 0.846 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -2.877 -4.241 19.862 20.512 hybrid contribution 0.328 0.278 0.070 0.436 sum -2.549 -3.963 19.932 20.481 Atomic orbital electron populations 1.22326 0.96201 0.99519 1.03005 1.21517 0.95397 0.82586 1.00552 1.43694 1.53080 1.11417 1.04727 1.19750 1.28204 1.13621 0.81935 0.87858 1.25346 0.94954 0.97135 0.99544 1.69975 1.16864 1.34789 1.27158 0.85999 0.79393 0.79103 0.80663 1.20329 1.21047 1.19308 1.16557 0.86503 0.85654 0.81712 1.90601 1.55580 1.15673 1.86394 1.21993 1.09461 0.92312 0.95864 1.23166 1.00145 0.96195 0.88892 1.50059 1.45865 1.12312 1.06742 1.20608 0.93284 1.05100 0.75147 1.21050 0.94375 0.93352 0.94102 1.21900 0.98829 0.98059 0.98382 1.21577 0.92330 0.98004 0.98214 1.22218 1.00311 0.97436 0.98805 1.22793 0.94150 0.95309 0.92982 1.67436 0.99367 1.26133 1.24409 1.81880 1.20936 1.06824 0.97054 1.74880 1.10654 1.13290 1.08484 0.87057 0.95333 0.96040 0.91311 0.91268 0.92163 0.78762 0.86474 0.87272 0.84391 0.84523 0.84569 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.28 37.15 0.34 -3.41 16 2 C 0.12 3.11 4.88 -4.04 -0.02 3.09 16 3 N -0.41 -11.38 2.63 -116.02 -0.30 -11.69 16 4 C -0.31 -8.78 9.25 -14.98 -0.14 -8.91 16 5 H 0.10 3.06 7.46 -52.48 -0.39 2.66 16 6 C 0.04 0.93 4.76 -17.46 -0.08 0.85 16 7 N -0.85 -22.69 8.53 55.50 0.47 -22.22 16 8 Si 0.92 20.70 29.62 -169.99 -5.03 15.66 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 12 C 0.51 13.59 7.58 -12.51 -0.09 13.49 16 13 O -0.60 -17.20 16.55 5.26 0.09 -17.12 16 14 C -0.06 -1.29 6.59 -83.55 -0.55 -1.84 16 15 C 0.07 1.26 11.28 -16.80 -0.19 1.07 16 16 N -0.36 -5.65 3.64 -62.22 -0.23 -5.88 16 17 C 0.18 1.83 6.92 -5.20 -0.04 1.80 16 18 C 0.11 1.23 6.27 -82.59 -0.52 0.71 16 19 C -0.15 -1.29 9.71 -39.44 -0.38 -1.67 16 20 C -0.08 -0.57 10.18 -39.28 -0.40 -0.97 16 21 C -0.17 -1.37 10.11 -39.44 -0.40 -1.77 16 22 C 0.11 1.12 11.18 -17.55 -0.20 0.92 16 23 N -0.46 -6.18 10.22 -9.48 -0.10 -6.27 16 24 N -0.09 -1.68 13.64 60.35 0.82 -0.86 16 25 N -0.20 -4.37 7.65 32.84 0.25 -4.12 16 26 H 0.11 2.99 5.29 -51.93 -0.27 2.72 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.02 0.53 7.22 -51.93 -0.37 0.15 16 29 H 0.07 1.79 6.68 -51.92 -0.35 1.44 16 30 H 0.07 1.67 5.19 -51.93 -0.27 1.40 16 31 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.20 2.87 8.06 -52.48 -0.42 2.45 16 33 H 0.12 0.88 8.08 -51.93 -0.42 0.46 16 34 H 0.11 0.77 7.87 -51.93 -0.41 0.36 16 35 H 0.14 0.79 7.95 -52.49 -0.42 0.37 16 36 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 37 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 38 H 0.16 1.37 8.06 -52.48 -0.42 0.95 16 LS Contribution 326.20 15.07 4.92 4.92 Total: -1.00 -35.49 326.20 -5.93 -41.42 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.15 Total: 2.80 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: -2.66 Total: 3.35 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: 0.92 Total: -51.03 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: 0.09 Total: -17.12 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.49 -5.93 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079733527.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.766 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds