Wall clock time and date at job start Tue Mar 31 2020 04:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47131 * 2 1 4 4 C 1.46504 * 119.99688 * 275.00143 * 3 2 1 5 5 C 1.50703 * 109.47155 * 274.99825 * 4 3 2 6 6 H 1.07993 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99678 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99923 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99572 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47427 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46908 * 120.00368 * 9 7 5 12 12 H 1.48498 * 109.46934 * 239.99969 * 9 7 5 13 13 S 1.65593 * 120.00232 * 95.00180 * 3 2 1 14 14 O 1.42108 * 106.40364 * 156.45810 * 13 3 2 15 15 O 1.42105 * 106.40127 * 23.54314 * 13 3 2 16 16 C 1.76196 * 107.21951 * 269.99968 * 13 3 2 17 17 C 1.39875 * 126.03727 * 90.02372 * 16 13 3 18 18 N 1.30839 * 108.20184 * 179.97438 * 17 16 13 19 19 N 1.40085 * 108.20364 * 0.02562 * 18 17 16 20 20 C 1.46506 * 126.03688 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47198 * 94.99901 * 20 19 18 22 22 C 1.52999 * 109.46973 * 214.99766 * 20 19 18 23 23 C 1.34949 * 107.93019 * 359.97438 * 19 18 17 24 24 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47022 * 299.99885 * 1 2 3 26 26 H 1.08995 * 109.47161 * 59.99707 * 1 2 3 27 27 H 1.09008 * 109.47022 * 240.00115 * 2 1 3 28 28 H 1.08997 * 109.47789 * 119.99891 * 2 1 3 29 29 H 1.08995 * 109.47543 * 35.00285 * 4 3 2 30 30 H 1.09003 * 109.46900 * 155.00384 * 4 3 2 31 31 H 0.97008 * 119.99582 * 179.97438 * 8 7 5 32 32 H 1.08003 * 125.89835 * 359.71925 * 17 16 13 33 33 H 1.09001 * 109.46756 * 334.99430 * 20 19 18 34 34 H 1.08997 * 109.47012 * 180.02562 * 21 20 19 35 35 H 1.09002 * 109.46851 * 299.99983 * 21 20 19 36 36 H 1.09000 * 109.46954 * 59.99809 * 21 20 19 37 37 H 1.09004 * 109.46983 * 60.00210 * 22 20 19 38 38 H 1.08997 * 109.46957 * 179.97438 * 22 20 19 39 39 H 1.08997 * 109.47485 * 299.99766 * 22 20 19 40 40 H 1.07997 * 126.13040 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4947 1.7888 -1.8824 6 1 4.1720 1.1111 -1.3841 7 6 3.8528 2.3614 -3.0845 8 7 3.0281 3.1870 -3.6911 9 14 5.5092 1.9643 -3.8515 10 1 6.2452 1.0165 -2.9769 11 1 5.3015 1.3477 -5.1864 12 1 6.2978 3.2137 -4.0007 13 16 2.4122 2.1202 1.4286 14 8 3.3285 3.1571 1.1048 15 8 2.7097 1.0799 2.3498 16 6 0.9556 2.9119 2.0253 17 6 -0.0045 2.3418 2.8678 18 7 -0.9348 3.2346 3.0903 19 7 -0.5958 4.4024 2.3949 20 6 -1.3679 5.6473 2.3730 21 6 -0.8236 6.6039 3.4357 22 6 -1.2488 6.2970 0.9929 23 6 0.5682 4.1788 1.7497 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.3617 1.8098 -1.9453 30 1 2.0922 3.1803 -1.0756 31 1 3.2803 3.5902 -4.5367 32 1 0.0162 1.3368 3.2628 33 1 -2.4151 5.4290 2.5826 34 1 -1.3983 7.5299 3.4196 35 1 -0.9084 6.1410 4.4189 36 1 0.2236 6.8221 3.2260 37 1 -1.6367 5.6155 0.2358 38 1 -1.8236 7.2229 0.9764 39 1 -0.2017 6.5153 0.7832 40 1 1.0960 4.8844 1.1254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096427913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:28 Heat of formation + Delta-G solvation = -3.438978 kcal Electronic energy + Delta-G solvation = -23537.127637 eV Core-core repulsion = 20094.811497 eV Total energy + Delta-G solvation = -3442.316140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -41.27047 -36.48374 -35.98487 -35.94156 -35.01878 -32.63491 -30.46114 -30.08631 -29.87117 -27.63929 -26.54809 -23.55351 -23.06788 -21.76147 -21.40807 -20.13780 -18.41790 -17.54228 -16.62176 -16.30956 -15.59510 -15.46105 -15.23633 -14.92750 -14.40871 -14.22226 -13.81417 -13.33414 -13.15388 -13.06342 -12.81844 -12.61302 -12.47073 -12.04791 -11.92767 -11.74726 -11.68181 -11.60941 -11.33934 -11.23323 -11.20732 -10.96172 -10.85710 -10.44841 -10.37716 -10.29377 -9.93164 -9.69166 -9.51760 -9.04662 -8.42301 -7.98671 -6.04396 -4.07339 1.20463 1.71768 2.34633 2.46445 3.32940 3.40628 3.46533 3.90785 4.19052 4.45914 4.52875 4.58034 4.62088 4.71273 4.86724 5.09992 5.16120 5.25769 5.31038 5.37374 5.45493 5.51655 5.60489 5.72787 5.76831 5.80877 5.82316 5.88756 6.09846 6.35531 6.48176 6.66989 6.71584 6.86583 7.27807 7.45816 7.52117 7.67713 7.94384 8.24115 8.95877 9.57739 11.04246 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.005238 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.644265 B = 5344.022183 C = 6078.883037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.983 5.983 4 C 0.258 3.742 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.715 3.285 14 O -0.952 6.952 15 O -0.980 6.980 16 C -0.810 4.810 17 C 0.130 3.870 18 N -0.301 5.301 19 N -0.360 5.360 20 C 0.148 3.852 21 C -0.167 4.167 22 C -0.171 4.171 23 C 0.180 3.820 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.262 0.738 32 H 0.193 0.807 33 H 0.105 0.895 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 3.711 10.213 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.008 4.008 3 N -0.822 5.822 4 C 0.136 3.864 5 C -0.563 4.563 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.209 1.209 13 S 2.802 3.198 14 O -0.942 6.942 15 O -0.970 6.970 16 C -0.906 4.906 17 C -0.059 4.059 18 N -0.119 5.119 19 N -0.139 5.139 20 C 0.047 3.953 21 C -0.225 4.225 22 C -0.229 4.229 23 C 0.028 3.972 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.210 0.790 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -11.070 4.251 11.072 16.224 hybrid contribution 0.808 -0.024 -1.037 1.315 sum -10.262 4.227 10.035 14.963 Atomic orbital electron populations 1.22254 0.97423 1.01326 1.02048 1.21155 0.92947 0.83091 1.03629 1.57426 1.81279 1.21165 1.22334 1.19027 0.97344 0.91124 0.78924 1.21560 1.02030 1.27373 1.05375 0.91967 1.24917 0.97312 0.94889 0.96897 1.69932 1.36072 1.30505 1.17251 0.86476 0.83959 0.78339 0.78893 1.19568 1.21069 1.20880 1.01219 0.73117 0.73192 0.72308 1.93575 1.58878 1.58126 1.83593 1.93470 1.83350 1.56769 1.63431 1.32143 1.28616 1.07018 1.22838 1.23439 0.89589 0.98957 0.93964 1.77311 1.23656 0.92403 1.18572 1.49380 1.17265 1.11248 1.36001 1.21415 0.96286 0.80162 0.97427 1.22266 1.02419 0.99046 0.98752 1.22274 1.04192 1.01773 0.94699 1.22419 0.86410 0.95865 0.92549 0.92268 0.93326 0.92156 0.89663 0.90331 0.94701 0.94604 0.92857 0.79000 0.87712 0.90219 0.91577 0.91503 0.90972 0.89666 0.90906 0.79400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 37.16 0.38 -2.11 16 2 C 0.12 2.04 6.40 -4.04 -0.03 2.01 16 3 N -0.98 -20.11 2.77 -115.66 -0.32 -20.43 16 4 C 0.26 6.28 5.10 -5.19 -0.03 6.25 16 5 C -0.52 -14.40 9.38 -34.44 -0.32 -14.72 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 9 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 S 2.72 54.22 5.79 -107.50 -0.62 53.60 16 14 O -0.95 -22.22 16.82 -57.17 -0.96 -23.18 16 15 O -0.98 -20.26 16.42 -57.17 -0.94 -21.20 16 16 C -0.81 -13.59 6.17 -40.01 -0.25 -13.83 16 17 C 0.13 1.99 11.02 -17.36 -0.19 1.79 16 18 N -0.30 -4.57 12.58 30.63 0.39 -4.19 16 19 N -0.36 -4.92 3.53 -54.86 -0.19 -5.11 16 20 C 0.15 1.43 3.93 -67.93 -0.27 1.17 16 21 C -0.17 -1.36 9.52 37.16 0.35 -1.00 16 22 C -0.17 -1.43 8.84 37.16 0.33 -1.10 16 23 C 0.18 2.74 10.33 -17.22 -0.18 2.56 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.67 7.33 -51.92 -0.38 0.29 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 1.50 8.11 -51.92 -0.42 1.08 16 28 H 0.08 1.27 6.91 -51.93 -0.36 0.91 16 29 H 0.03 0.87 8.11 -51.93 -0.42 0.44 16 30 H 0.04 0.91 7.61 -51.93 -0.40 0.52 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.19 2.46 8.06 -52.48 -0.42 2.04 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.63 7.16 -51.93 -0.37 0.26 16 40 H 0.19 2.57 7.26 -52.49 -0.38 2.19 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -33.95 350.22 -8.03 -41.98 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -6.08 Total: -0.99 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -0.29 Total: -17.37 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.61 Total: -54.66 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.90 Total: -44.38 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 54.22 SS G_CDS: -0.62 Total: 53.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.95 -8.03 -41.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096427913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.544 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds