Wall clock time and date at job start Tue Mar 31 2020 04:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47131 * 2 1 4 4 C 1.46504 * 119.99688 * 275.00143 * 3 2 1 5 5 C 1.50703 * 109.47155 * 274.99825 * 4 3 2 6 6 H 1.07993 * 120.00176 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99678 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99923 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99572 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47427 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46908 * 120.00368 * 9 7 5 12 12 H 1.48498 * 109.46934 * 239.99969 * 9 7 5 13 13 S 1.65593 * 120.00232 * 95.00180 * 3 2 1 14 14 O 1.42108 * 106.40364 * 156.45810 * 13 3 2 15 15 O 1.42105 * 106.40127 * 23.54314 * 13 3 2 16 16 C 1.76196 * 107.21951 * 269.99968 * 13 3 2 17 17 C 1.39875 * 126.03727 * 90.02372 * 16 13 3 18 18 N 1.30839 * 108.20184 * 179.97438 * 17 16 13 19 19 N 1.40085 * 108.20364 * 0.02562 * 18 17 16 20 20 C 1.46506 * 126.03688 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.47198 * 94.99901 * 20 19 18 22 22 C 1.52999 * 109.46973 * 214.99766 * 20 19 18 23 23 C 1.34949 * 107.93019 * 359.97438 * 19 18 17 24 24 H 1.08997 * 109.47190 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47022 * 299.99885 * 1 2 3 26 26 H 1.08995 * 109.47161 * 59.99707 * 1 2 3 27 27 H 1.09008 * 109.47022 * 240.00115 * 2 1 3 28 28 H 1.08997 * 109.47789 * 119.99891 * 2 1 3 29 29 H 1.08995 * 109.47543 * 35.00285 * 4 3 2 30 30 H 1.09003 * 109.46900 * 155.00384 * 4 3 2 31 31 H 0.97008 * 119.99582 * 179.97438 * 8 7 5 32 32 H 1.08003 * 125.89835 * 359.71925 * 17 16 13 33 33 H 1.09001 * 109.46756 * 334.99430 * 20 19 18 34 34 H 1.08997 * 109.47012 * 180.02562 * 21 20 19 35 35 H 1.09002 * 109.46851 * 299.99983 * 21 20 19 36 36 H 1.09000 * 109.46954 * 59.99809 * 21 20 19 37 37 H 1.09004 * 109.46983 * 60.00210 * 22 20 19 38 38 H 1.08997 * 109.46957 * 179.97438 * 22 20 19 39 39 H 1.08997 * 109.47485 * 299.99766 * 22 20 19 40 40 H 1.07997 * 126.13040 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 3.4947 1.7888 -1.8824 6 1 4.1720 1.1111 -1.3841 7 6 3.8528 2.3614 -3.0845 8 7 3.0281 3.1870 -3.6911 9 14 5.5092 1.9643 -3.8515 10 1 6.2452 1.0165 -2.9769 11 1 5.3015 1.3477 -5.1864 12 1 6.2978 3.2137 -4.0007 13 16 2.4122 2.1202 1.4286 14 8 3.3285 3.1571 1.1048 15 8 2.7097 1.0799 2.3498 16 6 0.9556 2.9119 2.0253 17 6 -0.0045 2.3418 2.8678 18 7 -0.9348 3.2346 3.0903 19 7 -0.5958 4.4024 2.3949 20 6 -1.3679 5.6473 2.3730 21 6 -0.8236 6.6039 3.4357 22 6 -1.2488 6.2970 0.9929 23 6 0.5682 4.1788 1.7497 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.3617 1.8098 -1.9453 30 1 2.0922 3.1803 -1.0756 31 1 3.2803 3.5902 -4.5367 32 1 0.0162 1.3368 3.2628 33 1 -2.4151 5.4290 2.5826 34 1 -1.3983 7.5299 3.4196 35 1 -0.9084 6.1410 4.4189 36 1 0.2236 6.8221 3.2260 37 1 -1.6367 5.6155 0.2358 38 1 -1.8236 7.2229 0.9764 39 1 -0.2017 6.5153 0.7832 40 1 1.0960 4.8844 1.1254 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096427913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:27 Heat of formation + Delta-G solvation = -26.911897 kcal Electronic energy + Delta-G solvation = -23538.145499 eV Core-core repulsion = 20094.811497 eV Total energy + Delta-G solvation = -3443.334002 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = -0.26 seconds Orbital eigenvalues (eV) -42.42335 -38.14020 -37.60274 -36.82815 -36.70624 -34.65728 -31.62143 -31.49448 -31.11875 -28.43493 -28.29923 -24.88132 -24.58871 -23.21336 -22.71305 -21.15574 -19.80565 -19.06394 -18.30362 -18.18963 -17.13300 -16.64576 -16.46138 -16.25765 -15.93819 -15.41745 -15.13618 -14.72190 -14.59000 -14.18946 -14.01207 -13.76164 -13.51356 -13.31914 -13.30148 -13.17361 -13.05281 -12.92502 -12.88221 -12.69883 -12.64594 -12.46605 -12.15937 -12.12718 -12.08685 -11.75209 -11.64258 -11.52693 -10.66211 -10.54719 -10.26768 -9.69202 -8.15302 -6.25669 -0.35551 0.50662 1.21316 1.34451 1.42049 1.44723 1.56369 2.34620 2.47110 3.01629 3.16104 3.20211 3.52438 3.70768 3.82136 3.91578 4.01319 4.09708 4.31055 4.45057 4.51930 4.56591 4.57634 4.65186 4.73487 4.76847 4.80498 5.08377 5.10272 5.14730 5.20867 5.24764 5.31807 5.45870 5.60056 5.78049 5.80252 6.02730 6.17792 6.35031 6.82880 7.42743 8.92359 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.016355 B = 0.005238 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.644265 B = 5344.022183 C = 6078.883037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 N -0.989 5.989 4 C 0.273 3.727 5 C -0.543 4.543 6 H 0.053 0.947 7 C 0.014 3.986 8 N -0.925 5.925 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.280 1.280 13 S 2.726 3.274 14 O -0.993 6.993 15 O -0.990 6.990 16 C -0.821 4.821 17 C 0.128 3.872 18 N -0.309 5.309 19 N -0.350 5.350 20 C 0.138 3.862 21 C -0.162 4.162 22 C -0.169 4.169 23 C 0.177 3.823 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.026 0.974 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.214 0.786 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.116 0.884 39 H 0.066 0.934 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.658 3.987 10.724 16.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.016 4.016 3 N -0.827 5.827 4 C 0.150 3.850 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.565 5.565 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.198 1.198 12 H -0.205 1.205 13 S 2.817 3.183 14 O -0.984 6.984 15 O -0.981 6.981 16 C -0.922 4.922 17 C -0.061 4.061 18 N -0.128 5.128 19 N -0.129 5.129 20 C 0.038 3.962 21 C -0.220 4.220 22 C -0.227 4.227 23 C 0.022 3.978 24 H 0.107 0.893 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.075 0.925 32 H 0.230 0.770 33 H 0.136 0.864 34 H 0.129 0.871 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.131 4.498 11.583 17.366 hybrid contribution 1.045 -0.052 -1.127 1.537 sum -11.087 4.446 10.456 15.875 Atomic orbital electron populations 1.22179 0.95066 1.03205 1.01763 1.21397 0.94970 0.81408 1.03822 1.57313 1.81876 1.22415 1.21130 1.18592 0.95705 0.90560 0.80149 1.21882 1.03223 1.27323 1.05858 0.92887 1.25674 1.00599 0.94803 0.97417 1.70011 1.37595 1.31173 1.17700 0.85582 0.79974 0.78193 0.78418 1.19442 1.19777 1.20550 1.00444 0.73441 0.72507 0.71865 1.93517 1.61393 1.59268 1.84189 1.93444 1.84119 1.57192 1.63332 1.31567 1.28106 1.07882 1.24601 1.23784 0.88880 0.99938 0.93456 1.77280 1.23705 0.92875 1.18896 1.49764 1.16676 1.11913 1.34505 1.21877 0.96525 0.78953 0.98814 1.22259 1.02497 0.99786 0.97432 1.22306 1.04350 1.02694 0.93370 1.22594 0.87025 0.95624 0.92557 0.89280 0.92575 0.93429 0.90449 0.89141 0.95550 0.96193 0.92499 0.76951 0.86427 0.87118 0.92548 0.92179 0.92239 0.86588 0.91462 0.78537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 10.24 71.98 0.74 -3.80 16 2 C 0.11 3.73 6.40 86.38 0.55 4.29 16 3 N -0.99 -41.02 2.77 -519.83 -1.44 -42.45 16 4 C 0.27 13.66 5.10 85.63 0.44 14.10 16 5 C -0.54 -30.42 9.38 25.60 0.24 -30.18 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.80 5.46 84.66 0.46 1.26 16 8 N -0.92 -53.29 13.29 21.45 0.28 -53.01 16 9 Si 0.95 44.27 29.54 68.60 2.03 46.30 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 S 2.73 110.16 5.79 -56.49 -0.33 109.83 16 14 O -0.99 -47.70 16.82 -128.00 -2.15 -49.86 16 15 O -0.99 -40.84 16.42 -128.00 -2.10 -42.94 16 16 C -0.82 -27.23 6.17 21.99 0.14 -27.09 16 17 C 0.13 3.76 11.02 85.24 0.94 4.70 16 18 N -0.31 -8.89 12.58 -57.02 -0.72 -9.61 16 19 N -0.35 -9.10 3.53 -327.48 -1.15 -10.26 16 20 C 0.14 2.38 3.93 44.99 0.18 2.55 16 21 C -0.16 -2.27 9.52 71.98 0.69 -1.58 16 22 C -0.17 -2.50 8.84 71.98 0.64 -1.86 16 23 C 0.18 5.29 10.33 83.54 0.86 6.16 16 24 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.06 1.46 7.33 -2.38 -0.02 1.45 16 26 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.08 2.73 8.11 -2.38 -0.02 2.71 16 28 H 0.09 2.86 6.91 -2.39 -0.02 2.84 16 29 H 0.03 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.02 1.06 7.61 -2.39 -0.02 1.04 16 31 H 0.27 14.40 8.31 -92.70 -0.77 13.63 16 32 H 0.21 5.06 8.06 -2.91 -0.02 5.03 16 33 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.08 7.16 -2.39 -0.02 1.06 16 40 H 0.20 5.42 7.26 -2.91 -0.02 5.40 16 Total: -1.00 -72.64 350.22 1.30 -71.34 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 1.02 Total: 12.11 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 5.86 Total: -31.46 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -3.03 Total: -115.33 kcal Atomic # 8 Polarization: -88.54 SS G_CDS: -4.25 Total: -92.79 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 110.16 SS G_CDS: -0.33 Total: 109.83 kcal Total: -72.64 1.30 -71.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096427913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.426 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.26 seconds