Wall clock time and date at job start Tue Mar 31 2020 04:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00084 * 2 1 4 4 C 1.53002 * 109.47030 * 84.99978 * 3 2 1 5 5 N 1.46506 * 109.47035 * 180.02562 * 4 3 2 6 6 C 1.34944 * 126.03372 * 125.00124 * 5 4 3 7 7 C 1.35317 * 107.74658 * 179.97438 * 6 5 4 8 8 C 1.39871 * 107.91935 * 0.02562 * 7 6 5 9 9 N 1.30845 * 108.20108 * 359.74200 * 8 7 6 10 10 S 1.65607 * 120.00180 * 180.02562 * 2 1 3 11 11 O 1.42101 * 104.27365 * 26.07069 * 10 2 1 12 12 O 1.42097 * 104.27545 * 153.92560 * 10 2 1 13 13 C 1.81398 * 104.44703 * 269.99879 * 10 2 1 14 14 C 1.53007 * 109.46545 * 179.97438 * 13 10 2 15 15 C 1.53007 * 109.46646 * 179.97438 * 14 13 10 16 16 C 1.50694 * 109.46733 * 179.97438 * 15 14 13 17 17 H 1.08005 * 120.00236 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00115 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99606 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00577 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47150 * 89.99778 * 20 18 16 22 22 H 1.48495 * 109.47547 * 210.00550 * 20 18 16 23 23 H 1.48511 * 109.46768 * 330.00196 * 20 18 16 24 24 H 1.09001 * 109.47054 * 90.00271 * 1 2 3 25 25 H 1.09005 * 109.46726 * 209.99441 * 1 2 3 26 26 H 1.08994 * 109.46956 * 329.99696 * 1 2 3 27 27 H 1.09004 * 109.47074 * 325.00299 * 3 2 1 28 28 H 1.09004 * 109.47714 * 205.00208 * 3 2 1 29 29 H 1.09004 * 109.46930 * 60.00232 * 4 3 2 30 30 H 1.09000 * 109.47312 * 300.00176 * 4 3 2 31 31 H 1.08001 * 126.12891 * 0.02562 * 6 5 4 32 32 H 1.08002 * 126.04160 * 179.97438 * 7 6 5 33 33 H 1.07995 * 125.90070 * 179.97438 * 8 7 6 34 34 H 1.08990 * 109.47243 * 299.99602 * 13 10 2 35 35 H 1.08995 * 109.47188 * 60.00634 * 13 10 2 36 36 H 1.09000 * 109.47222 * 299.99574 * 14 13 10 37 37 H 1.08990 * 109.47150 * 60.00216 * 14 13 10 38 38 H 1.09000 * 109.46976 * 299.99742 * 15 14 13 39 39 H 1.09002 * 109.46833 * 60.00462 * 15 14 13 40 40 H 0.97000 * 120.00195 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3436 1.7732 1.4370 5 7 3.0756 3.0423 1.4370 6 6 2.6537 4.2021 1.9827 7 6 3.6144 5.1312 1.7708 8 6 4.6590 4.5183 1.0711 9 7 4.3393 3.2647 0.8750 10 16 2.2931 -1.4342 -0.0006 11 8 1.3970 -2.3559 -0.6063 12 8 3.5395 -1.1188 -0.6058 13 6 2.5194 -1.8269 1.7558 14 6 3.2810 -3.1472 1.8891 15 6 3.4725 -3.4782 3.3706 16 6 4.2220 -4.7789 3.5019 17 1 4.5305 -5.3160 2.6171 18 6 4.5139 -5.2833 4.7514 19 7 4.1377 -4.6294 5.8287 20 14 5.4436 -6.8952 4.9143 21 1 6.9028 -6.6230 4.9564 22 1 5.0315 -7.5802 6.1657 23 1 5.1356 -7.7641 3.7499 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6501 2.0043 -0.5894 28 1 3.1858 1.1177 -0.4343 29 1 2.8910 1.0376 2.0265 30 1 1.3553 1.9242 1.8714 31 1 1.7174 4.3602 2.4973 32 1 3.5803 6.1637 2.0856 33 1 5.5732 4.9961 0.7515 34 1 3.0867 -1.0298 2.2361 35 1 1.5452 -1.9198 2.2358 36 1 2.7133 -3.9442 1.4088 37 1 4.2551 -3.0548 1.4090 38 1 4.0404 -2.6811 3.8504 39 1 2.4984 -3.5705 3.8511 40 1 4.3427 -4.9844 6.7079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111357385.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:20 Heat of formation + Delta-G solvation = 2.315794 kcal Electronic energy + Delta-G solvation = -22366.423642 eV Core-core repulsion = 18924.357048 eV Total energy + Delta-G solvation = -3442.066594 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28858 -37.23297 -36.97391 -35.81059 -34.72505 -33.44634 -32.21890 -30.38599 -28.99108 -27.87159 -26.22417 -23.99823 -23.25352 -21.28660 -20.89696 -20.45481 -18.88560 -17.80008 -17.38477 -16.68881 -16.55866 -15.86440 -15.44729 -14.90549 -14.79614 -14.50472 -14.21026 -14.03448 -13.90846 -13.42361 -12.98147 -12.86762 -12.63993 -12.61832 -12.33960 -12.12254 -11.98367 -11.83639 -11.63311 -11.38595 -11.23983 -10.93758 -10.88197 -10.77281 -10.46114 -9.98976 -9.80721 -9.52766 -9.30552 -9.07652 -8.76079 -8.42839 -6.07881 -4.10989 0.31499 1.71741 2.16968 2.68989 2.71631 3.29522 3.35591 3.39615 3.89678 4.13321 4.27694 4.36140 4.41271 4.58235 4.63419 4.86040 4.88760 4.99913 5.08803 5.21849 5.24714 5.28777 5.38011 5.54348 5.56359 5.58082 5.73095 5.81977 5.83601 6.16989 6.27901 6.39518 6.48202 6.79429 6.82937 7.53429 7.53467 7.63111 7.89864 8.30213 8.95101 9.53932 11.03346 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003601 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.046347 B = 7774.470156 C = 9007.650299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -1.006 6.006 3 C 0.106 3.894 4 C 0.107 3.893 5 N -0.370 5.370 6 C 0.053 3.947 7 C -0.276 4.276 8 C 0.043 3.957 9 N -0.288 5.288 10 S 2.593 3.407 11 O -0.955 6.955 12 O -0.953 6.953 13 C -0.610 4.610 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.173 0.827 32 H 0.146 0.854 33 H 0.183 0.817 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 19.359 -8.499 22.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.842 5.842 3 C -0.021 4.021 4 C -0.016 4.016 5 N -0.153 5.153 6 C -0.093 4.093 7 C -0.306 4.306 8 C -0.143 4.143 9 N -0.109 5.109 10 S 2.690 3.310 11 O -0.945 6.945 12 O -0.943 6.943 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.130 0.870 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.190 0.810 32 H 0.164 0.836 33 H 0.200 0.800 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.787 17.648 -9.628 21.559 hybrid contribution 0.024 0.244 1.467 1.487 sum -7.764 17.892 -8.161 21.142 Atomic orbital electron populations 1.21500 0.78190 1.03045 1.02580 1.57638 1.15261 1.21077 1.90231 1.21559 0.99626 0.85828 0.95055 1.22321 0.96396 0.83107 0.99821 1.48594 1.14188 1.08767 1.43738 1.22591 1.00761 0.86145 0.99767 1.21518 0.96287 1.01272 1.11508 1.23947 1.00081 0.91526 0.98771 1.77483 0.95411 1.18030 1.20015 1.05715 0.73840 0.72772 0.78706 1.93574 1.64694 1.61843 1.74416 1.93579 1.43720 1.82551 1.74439 1.30646 1.10630 1.09677 1.23183 1.21513 0.98230 0.90425 1.04344 1.19059 0.97402 0.96817 0.87418 1.21250 1.36312 1.06528 0.92416 0.92339 1.25019 0.95875 0.97583 0.95874 1.69955 1.46685 1.39052 0.97753 0.86547 0.80117 0.83511 0.77600 1.20534 1.21161 1.19712 0.92164 0.90560 0.91173 0.89552 0.87047 0.89247 0.87881 0.80999 0.83581 0.80010 0.85637 0.85336 0.91495 0.91493 0.96156 0.96126 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.22 59.85 0.61 1.34 16 2 N -1.01 -10.72 3.12 -121.76 -0.38 -11.10 16 3 C 0.11 1.07 5.83 -4.04 -0.02 1.05 16 4 C 0.11 0.98 6.83 -4.04 -0.03 0.95 16 5 N -0.37 -3.97 3.68 -61.36 -0.23 -4.19 16 6 C 0.05 0.45 11.45 -17.22 -0.20 0.26 16 7 C -0.28 -2.40 10.80 -40.01 -0.43 -2.84 16 8 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 9 N -0.29 -3.73 12.42 30.63 0.38 -3.35 16 10 S 2.59 38.27 5.38 -107.50 -0.58 37.69 16 11 O -0.95 -16.49 17.09 -57.54 -0.98 -17.48 16 12 O -0.95 -17.01 16.53 -57.54 -0.95 -17.96 16 13 C -0.61 -9.17 6.18 37.16 0.23 -8.94 16 14 C -0.11 -2.13 5.16 -26.72 -0.14 -2.27 16 15 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 16 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 17 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.59 7.79 -51.93 -0.40 0.18 16 26 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 27 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.11 1.42 6.82 -51.93 -0.35 1.06 16 29 H 0.09 0.89 6.96 -51.93 -0.36 0.52 16 30 H 0.10 0.60 8.07 -51.93 -0.42 0.18 16 31 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.13 1.70 6.96 -51.93 -0.36 1.34 16 35 H 0.13 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -36.83 352.25 -8.54 -45.36 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.09 Total: -1.92 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -0.74 Total: -23.16 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: 0.51 Total: -44.44 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.93 Total: -35.44 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.27 SS G_CDS: -0.58 Total: 37.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.83 -8.54 -45.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111357385.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.679 kcal (2) G-P(sol) polarization free energy of solvation -36.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds