Wall clock time and date at job start Tue Mar 31 2020 03:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99935 * 2 1 4 4 C 1.38213 * 120.00039 * 180.28115 * 3 2 1 5 5 C 1.38257 * 119.99945 * 359.74428 * 4 3 2 6 6 C 1.38211 * 120.00115 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00166 * 179.75270 * 2 1 3 8 8 C 1.50703 * 119.99959 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.47064 * 84.72709 * 8 7 2 10 10 N 1.33313 * 126.55049 * 269.69289 * 9 8 7 11 11 N 1.28997 * 107.35243 * 179.83905 * 10 9 8 12 12 N 1.28781 * 108.72685 * 0.42339 * 11 10 9 13 13 C 1.46503 * 125.44885 * 179.72659 * 12 11 10 14 14 C 1.50699 * 109.47563 * 270.00403 * 13 12 11 15 15 O 1.21288 * 119.99432 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99993 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99578 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00551 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99846 * 180.02562 * 17 16 14 20 20 N 1.31419 * 120.00108 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00077 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47149 * 89.99743 * 21 19 17 23 23 H 1.48501 * 109.46674 * 209.99491 * 21 19 17 24 24 H 1.48500 * 109.46836 * 329.99374 * 21 19 17 25 25 N 1.28880 * 109.10302 * 359.73023 * 12 11 10 26 26 H 1.09004 * 109.46714 * 270.24685 * 1 2 3 27 27 H 1.09001 * 109.47281 * 30.24784 * 1 2 3 28 28 H 1.09001 * 109.47263 * 150.25366 * 1 2 3 29 29 H 1.08001 * 120.00281 * 0.04654 * 3 2 1 30 30 H 1.07998 * 120.00425 * 179.77172 * 4 3 2 31 31 H 1.07998 * 120.00075 * 180.02562 * 5 4 3 32 32 H 1.07999 * 120.00450 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47152 * 324.72801 * 8 7 2 34 34 H 1.09001 * 109.46980 * 204.72902 * 8 7 2 35 35 H 1.09000 * 109.47116 * 30.00833 * 13 12 11 36 36 H 1.09005 * 109.47048 * 150.00246 * 13 12 11 37 37 H 0.96995 * 120.00114 * 0.02562 * 16 14 13 38 38 H 0.96996 * 120.00045 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0059 5 6 4.2717 0.0000 -0.0064 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0052 8 6 1.4446 -2.5020 0.0114 9 6 1.0798 -2.8782 -1.4016 10 7 -0.0384 -2.5475 -2.0477 11 7 0.0350 -3.0582 -3.2300 12 7 1.1481 -3.6972 -3.3360 13 6 1.6020 -4.4217 -4.5257 14 6 1.1257 -5.8498 -4.4565 15 8 0.4711 -6.2253 -3.5070 16 7 1.4264 -6.7092 -5.4501 17 6 0.9926 -8.0083 -5.3873 18 1 0.4098 -8.3427 -4.5419 19 6 1.3030 -8.8946 -6.4114 20 7 2.0118 -8.4875 -7.4405 21 14 0.7114 -10.6644 -6.3262 22 1 -0.6213 -10.7725 -6.9723 23 1 1.6770 -11.5436 -7.0333 24 1 0.6084 -11.0840 -4.9055 25 7 1.7988 -3.5975 -2.2280 26 1 -0.3633 0.0044 1.0277 27 1 -0.3634 0.8878 -0.5177 28 1 -0.3634 -0.8923 -0.5099 29 1 1.6583 2.1327 0.0008 30 1 4.1204 2.1326 -0.0096 31 1 5.3516 0.0000 -0.0106 32 1 4.1206 -2.1322 -0.0005 33 1 0.5365 -2.3945 0.6047 34 1 2.0715 -3.2814 0.4446 35 1 1.1952 -3.9458 -5.4180 36 1 2.6910 -4.4035 -4.5687 37 1 1.9495 -6.4088 -6.2096 38 1 2.2288 -9.1063 -8.1552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153271191.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:11 Heat of formation + Delta-G solvation = 110.414689 kcal Electronic energy + Delta-G solvation = -23142.985964 eV Core-core repulsion = 19602.455690 eV Total energy + Delta-G solvation = -3540.530275 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.96282 -39.65262 -38.51317 -35.12312 -34.21688 -33.73763 -32.76999 -31.85615 -31.48829 -29.18447 -27.65292 -26.53193 -25.06748 -23.08927 -22.55132 -21.94724 -20.67060 -19.91143 -18.32118 -17.38684 -16.81355 -16.48769 -15.73098 -15.64008 -15.07589 -14.97842 -14.63212 -14.40912 -13.92968 -13.70234 -13.45811 -13.32625 -13.14101 -12.77391 -12.47414 -12.25936 -12.14472 -12.00071 -11.74095 -11.52475 -11.19810 -11.18225 -11.03340 -10.67375 -10.56113 -10.53559 -10.41153 -9.87574 -9.75705 -8.93666 -8.74482 -8.69103 -8.24114 -6.63765 -4.05928 1.17369 1.28750 1.61627 2.24043 2.49324 3.03415 3.16885 3.22484 3.50259 3.59558 3.99115 4.22641 4.47715 4.53254 4.66750 4.74742 4.86517 4.91724 4.99162 5.16552 5.19876 5.25196 5.37970 5.51456 5.59693 5.61744 5.69925 5.76278 5.81080 5.89230 6.05566 6.10556 6.27769 6.37094 6.39406 6.48679 6.57853 6.90088 7.35703 7.76619 8.29218 8.73450 8.92135 9.20254 9.68506 10.52723 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.033020 B = 0.002735 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.755619 B =10233.560882 C =10499.531533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 C -0.126 4.126 4 C -0.117 4.117 5 C -0.130 4.130 6 C -0.100 4.100 7 C -0.086 4.086 8 C 0.020 3.980 9 C 0.162 3.838 10 N -0.290 5.290 11 N -0.052 5.052 12 N -0.105 5.105 13 C 0.115 3.885 14 C 0.421 3.579 15 O -0.579 6.579 16 N -0.542 5.542 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.029 3.971 20 N -0.893 5.893 21 Si 0.935 3.065 22 H -0.275 1.275 23 H -0.281 1.281 24 H -0.268 1.268 25 N -0.293 5.293 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.396 0.604 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.166 16.533 10.557 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.135 4.135 5 C -0.148 4.148 6 C -0.118 4.118 7 C -0.087 4.087 8 C -0.020 4.020 9 C -0.120 4.120 10 N -0.162 5.162 11 N -0.045 5.045 12 N -0.016 5.016 13 C -0.010 4.010 14 C 0.204 3.796 15 O -0.463 6.463 16 N -0.177 5.177 17 C -0.433 4.433 18 H 0.124 0.876 19 C -0.175 4.175 20 N -0.533 5.533 21 Si 0.761 3.239 22 H -0.201 1.201 23 H -0.206 1.206 24 H -0.192 1.192 25 N -0.143 5.143 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.230 0.770 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.436 16.095 10.402 19.470 hybrid contribution 0.502 -0.736 -0.301 0.940 sum 3.939 15.360 10.101 18.801 Atomic orbital electron populations 1.21028 0.90801 1.04524 1.02366 1.19867 0.96448 0.92372 0.97932 1.21024 0.94238 0.97428 1.01668 1.21136 0.94340 0.97995 1.00031 1.21096 0.99817 0.92457 1.01443 1.21109 0.93415 0.98483 0.98823 1.19502 0.93607 0.93615 1.01967 1.18789 1.01521 0.94995 0.86697 1.25127 0.89792 0.97990 0.99126 1.75642 1.20567 1.21029 0.98911 1.78902 1.04555 1.06874 1.14151 1.49362 1.10248 1.31299 1.10728 1.22048 1.02940 0.93482 0.82498 1.19412 0.87803 0.85948 0.86434 1.90628 1.43745 1.77641 1.34328 1.41701 1.47041 1.09837 1.19156 1.19735 1.31948 0.84453 1.07186 0.87591 1.25335 0.96371 1.00852 0.94905 1.69598 1.37244 1.37091 1.09332 0.85782 0.78458 0.80825 0.78851 1.20096 1.20648 1.19223 1.74589 1.25340 1.19979 0.94418 0.91155 0.91687 0.89109 0.86141 0.86280 0.86124 0.85658 0.87740 0.88093 0.85050 0.85239 0.76987 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 9.22 36.00 0.33 -1.02 16 2 C -0.07 -0.75 5.88 -104.63 -0.62 -1.36 16 3 C -0.13 -1.27 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 5 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 6 C -0.10 -1.11 9.68 -39.58 -0.38 -1.49 16 7 C -0.09 -1.02 5.12 -104.62 -0.54 -1.55 16 8 C 0.02 0.25 5.29 -29.03 -0.15 0.09 16 9 C 0.16 2.70 7.37 -156.62 -1.15 1.55 16 10 N -0.29 -5.28 10.87 32.45 0.35 -4.92 16 11 N -0.05 -1.02 13.25 60.35 0.80 -0.22 16 12 N -0.10 -1.98 3.49 -11.71 -0.04 -2.02 16 13 C 0.11 1.92 7.08 -5.19 -0.04 1.89 16 14 C 0.42 9.49 7.85 -10.99 -0.09 9.40 16 15 O -0.58 -15.74 16.01 5.55 0.09 -15.65 16 16 N -0.54 -12.77 5.29 -10.97 -0.06 -12.83 16 17 C -0.30 -8.07 9.68 -14.93 -0.14 -8.21 16 18 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.03 0.73 5.50 -17.46 -0.10 0.63 16 20 N -0.89 -22.83 13.05 55.50 0.72 -22.10 16 21 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 N -0.29 -5.39 12.13 32.47 0.39 -5.00 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 28 H 0.09 1.11 4.88 -51.93 -0.25 0.86 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.10 1.12 7.01 -51.93 -0.36 0.76 16 34 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 35 H 0.13 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 37 H 0.40 8.59 7.90 -40.82 -0.32 8.27 16 38 H 0.28 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -32.97 335.47 -6.01 -38.97 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -4.25 Total: 8.52 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -4.05 Total: -4.93 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: 2.17 Total: -47.09 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.09 Total: -15.65 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.97 -6.01 -38.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153271191.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.389 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds