Wall clock time and date at job start Tue Mar 31 2020 03:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38230 * 120.00337 * 2 1 4 4 C 1.38240 * 120.00253 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.99631 * 359.95030 * 4 3 2 6 6 C 1.50703 * 119.99860 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.99959 * 6 5 4 8 8 N 1.33313 * 126.55049 * 269.69289 * 7 6 5 9 9 N 1.28997 * 107.35243 * 179.83905 * 8 7 6 10 10 N 1.28781 * 108.72685 * 0.42339 * 9 8 7 11 11 C 1.46503 * 125.44885 * 179.72659 * 10 9 8 12 12 C 1.50699 * 109.47563 * 270.00403 * 11 10 9 13 13 O 1.21288 * 119.99432 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99993 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99578 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00551 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99846 * 180.02562 * 15 14 12 18 18 N 1.31419 * 120.00108 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47252 * 59.99587 * 19 17 15 21 21 H 1.48507 * 109.46906 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46769 * 299.99360 * 19 17 15 23 23 N 1.28880 * 109.10302 * 359.73023 * 10 9 8 24 24 C 1.38234 * 120.00312 * 0.27932 * 5 4 3 25 25 C 1.38235 * 119.99933 * 359.51395 * 24 5 4 26 26 H 1.08992 * 109.46933 * 90.00004 * 1 2 3 27 27 H 1.09001 * 109.47076 * 210.00313 * 1 2 3 28 28 H 1.08999 * 109.46605 * 330.00376 * 1 2 3 29 29 H 1.07999 * 120.00198 * 359.97108 * 3 2 1 30 30 H 1.07996 * 119.99763 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 330.00052 * 6 5 4 32 32 H 1.09001 * 109.46980 * 210.00152 * 6 5 4 33 33 H 1.09000 * 109.47116 * 30.00833 * 11 10 9 34 34 H 1.09005 * 109.47048 * 150.00246 * 11 10 9 35 35 H 0.96995 * 120.00114 * 0.02562 * 14 12 11 36 36 H 0.96996 * 120.00045 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.00015 * 179.72855 * 24 5 4 38 38 H 1.07997 * 120.00521 * 180.25191 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5807 1.1970 -0.0005 5 6 4.2717 -0.0001 0.0000 6 6 5.7788 -0.0002 0.0000 7 6 6.2811 0.0004 1.4208 8 7 6.5512 1.0716 2.1669 9 7 6.9518 0.6479 3.3176 10 7 6.9482 -0.6399 3.3082 11 6 7.3437 -1.4989 4.4271 12 6 8.8189 -1.7937 4.3373 13 8 9.4753 -1.3313 3.4282 14 7 9.4088 -2.5702 5.2675 15 6 10.7509 -2.8379 5.1859 16 1 11.3355 -2.4263 4.3766 17 6 11.3590 -3.6389 6.1447 18 7 10.6478 -4.1395 7.1300 19 14 13.1878 -4.0032 6.0340 20 1 13.9506 -2.7304 6.0936 21 1 13.5887 -4.8736 7.1685 22 1 13.4781 -4.6947 4.7523 23 7 6.5411 -1.0521 2.1570 24 6 3.5806 -1.1973 -0.0048 25 6 2.1982 -1.1972 0.0000 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8900 0.5138 29 1 1.6584 2.1324 -0.0005 30 1 4.1206 2.1323 -0.0010 31 1 6.1422 0.8895 -0.5142 32 1 6.1420 -0.8904 -0.5135 33 1 7.1314 -0.9909 5.3679 34 1 6.7833 -2.4328 4.3840 35 1 8.8838 -2.9396 5.9947 36 1 11.0722 -4.6990 7.7990 37 1 4.1205 -2.1325 -0.0089 38 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190686521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:14 Heat of formation + Delta-G solvation = 106.511686 kcal Electronic energy + Delta-G solvation = -22770.215618 eV Core-core repulsion = 19229.516096 eV Total energy + Delta-G solvation = -3540.699522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.94000 -39.56795 -38.50955 -35.24060 -34.32638 -33.88378 -32.55811 -31.55274 -31.04100 -30.01741 -28.32024 -25.58414 -25.03942 -23.07472 -22.65693 -22.22954 -20.77093 -19.90503 -18.31630 -17.38925 -16.79564 -16.28366 -15.65197 -15.57752 -15.17279 -14.95524 -14.63344 -14.36661 -13.96465 -13.85395 -13.59128 -13.50833 -13.15961 -12.77924 -12.73450 -12.32535 -12.07544 -11.94198 -11.73430 -11.46151 -11.38611 -11.16684 -11.04693 -10.66780 -10.58050 -10.57600 -10.40620 -9.88690 -9.74282 -9.02995 -8.74469 -8.66244 -8.23641 -6.63200 -4.05424 1.13552 1.30086 1.62761 2.25320 2.51022 3.05829 3.16448 3.20751 3.50867 3.57205 3.99549 4.25919 4.49214 4.53830 4.62400 4.70278 4.82319 4.91681 4.94342 5.09998 5.17262 5.26459 5.32756 5.35455 5.53261 5.55148 5.57689 5.68295 5.81352 5.86524 5.97381 6.06198 6.17037 6.28299 6.45095 6.49858 6.51622 6.88560 7.35952 7.76885 8.29785 8.75133 8.92478 9.20665 9.69067 10.53177 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.033593 B = 0.002541 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.302003 B =11017.716880 C =11269.924468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.123 4.123 4 C -0.099 4.099 5 C -0.087 4.087 6 C 0.022 3.978 7 C 0.161 3.839 8 N -0.290 5.290 9 N -0.053 5.053 10 N -0.105 5.105 11 C 0.115 3.885 12 C 0.421 3.579 13 O -0.579 6.579 14 N -0.541 5.541 15 C -0.305 4.305 16 H 0.106 0.894 17 C 0.029 3.971 18 N -0.893 5.893 19 Si 0.936 3.064 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.271 1.271 23 N -0.293 5.293 24 C -0.100 4.100 25 C -0.123 4.123 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.127 0.873 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.396 0.604 36 H 0.276 0.724 37 H 0.126 0.874 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.028 4.685 -10.326 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 C -0.141 4.141 4 C -0.117 4.117 5 C -0.088 4.088 6 C -0.018 4.018 7 C -0.121 4.121 8 N -0.161 5.161 9 N -0.046 5.046 10 N -0.017 5.017 11 C -0.010 4.010 12 C 0.204 3.796 13 O -0.464 6.464 14 N -0.177 5.177 15 C -0.434 4.434 16 H 0.124 0.876 17 C -0.175 4.175 18 N -0.533 5.533 19 Si 0.762 3.238 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.197 1.197 23 N -0.144 5.144 24 C -0.119 4.119 25 C -0.141 4.141 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.230 0.770 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.294 5.082 -10.127 20.675 hybrid contribution 0.543 -0.762 0.231 0.964 sum -16.751 4.320 -9.895 19.929 Atomic orbital electron populations 1.20788 0.91361 1.02711 1.02196 1.19948 0.96003 0.93330 0.99675 1.21003 0.94108 0.97478 1.01529 1.21106 0.94129 0.97779 0.98685 1.19619 0.94222 0.93601 1.01391 1.18769 0.91105 1.05513 0.86429 1.25155 1.02560 0.84950 0.99466 1.75717 1.16331 1.26263 0.97797 1.78907 1.14929 0.94122 1.16613 1.49372 1.37854 1.04567 1.09893 1.22043 0.98698 0.94918 0.85295 1.19416 0.87255 0.86343 0.86608 1.90627 1.64252 1.55720 1.35770 1.41693 1.09962 1.42437 1.23615 1.19686 0.83398 1.28892 1.11406 0.87645 1.25335 1.00947 0.96134 0.95042 1.69591 1.37234 1.33129 1.13310 0.85837 0.81332 0.78675 0.77987 1.19638 1.20711 1.19656 1.74583 1.17767 1.27916 0.94139 1.21111 0.94162 0.97781 0.98796 1.21006 0.94094 0.97499 1.01508 0.91243 0.91625 0.91631 0.86111 0.85552 0.87829 0.88064 0.85055 0.85241 0.76982 0.91354 0.85629 0.86111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.42 16 2 C -0.09 -0.86 5.88 -104.62 -0.62 -1.47 16 3 C -0.12 -1.22 9.70 -39.58 -0.38 -1.60 16 4 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 5 C -0.09 -1.01 5.12 -104.62 -0.54 -1.55 16 6 C 0.02 0.27 5.97 -29.03 -0.17 0.10 16 7 C 0.16 2.72 7.60 -156.62 -1.19 1.53 16 8 N -0.29 -5.44 12.50 32.45 0.41 -5.04 16 9 N -0.05 -1.05 13.25 60.35 0.80 -0.25 16 10 N -0.11 -2.01 3.49 -11.71 -0.04 -2.05 16 11 C 0.11 1.94 7.08 -5.19 -0.04 1.90 16 12 C 0.42 9.54 7.85 -10.99 -0.09 9.45 16 13 O -0.58 -15.84 16.01 5.55 0.09 -15.75 16 14 N -0.54 -12.81 5.29 -10.97 -0.06 -12.87 16 15 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 16 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 17 C 0.03 0.73 5.50 -17.46 -0.10 0.64 16 18 N -0.89 -22.85 13.05 55.50 0.72 -22.13 16 19 Si 0.94 20.19 29.55 -169.99 -5.02 15.17 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 N -0.29 -5.44 12.13 32.47 0.39 -5.05 16 24 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 25 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 32 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 34 H 0.13 1.76 8.14 -51.93 -0.42 1.33 16 35 H 0.40 8.62 7.90 -40.82 -0.32 8.30 16 36 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -33.36 342.46 -6.08 -39.43 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -4.47 Total: 7.61 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -4.05 Total: -4.25 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 2.22 Total: -47.38 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.09 Total: -15.75 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.36 -6.08 -39.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190686521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.946 kcal (2) G-P(sol) polarization free energy of solvation -33.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds