Wall clock time and date at job start Tue Mar 31 2020 03:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38230 * 120.00337 * 2 1 4 4 C 1.38240 * 120.00253 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.99631 * 359.95030 * 4 3 2 6 6 C 1.50703 * 119.99860 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47064 * 89.99959 * 6 5 4 8 8 N 1.33313 * 126.55049 * 269.69289 * 7 6 5 9 9 N 1.28997 * 107.35243 * 179.83905 * 8 7 6 10 10 N 1.28781 * 108.72685 * 0.42339 * 9 8 7 11 11 C 1.46503 * 125.44885 * 179.72659 * 10 9 8 12 12 C 1.50699 * 109.47563 * 270.00403 * 11 10 9 13 13 O 1.21288 * 119.99432 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99993 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99578 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00551 * 0.02562 * 15 14 12 17 17 C 1.38949 * 119.99846 * 180.02562 * 15 14 12 18 18 N 1.31419 * 120.00108 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47252 * 59.99587 * 19 17 15 21 21 H 1.48507 * 109.46906 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46769 * 299.99360 * 19 17 15 23 23 N 1.28880 * 109.10302 * 359.73023 * 10 9 8 24 24 C 1.38234 * 120.00312 * 0.27932 * 5 4 3 25 25 C 1.38235 * 119.99933 * 359.51395 * 24 5 4 26 26 H 1.08992 * 109.46933 * 90.00004 * 1 2 3 27 27 H 1.09001 * 109.47076 * 210.00313 * 1 2 3 28 28 H 1.08999 * 109.46605 * 330.00376 * 1 2 3 29 29 H 1.07999 * 120.00198 * 359.97108 * 3 2 1 30 30 H 1.07996 * 119.99763 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47152 * 330.00052 * 6 5 4 32 32 H 1.09001 * 109.46980 * 210.00152 * 6 5 4 33 33 H 1.09000 * 109.47116 * 30.00833 * 11 10 9 34 34 H 1.09005 * 109.47048 * 150.00246 * 11 10 9 35 35 H 0.96995 * 120.00114 * 0.02562 * 14 12 11 36 36 H 0.96996 * 120.00045 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.00015 * 179.72855 * 24 5 4 38 38 H 1.07997 * 120.00521 * 180.25191 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5807 1.1970 -0.0005 5 6 4.2717 -0.0001 0.0000 6 6 5.7788 -0.0002 0.0000 7 6 6.2811 0.0004 1.4208 8 7 6.5512 1.0716 2.1669 9 7 6.9518 0.6479 3.3176 10 7 6.9482 -0.6399 3.3082 11 6 7.3437 -1.4989 4.4271 12 6 8.8189 -1.7937 4.3373 13 8 9.4753 -1.3313 3.4282 14 7 9.4088 -2.5702 5.2675 15 6 10.7509 -2.8379 5.1859 16 1 11.3355 -2.4263 4.3766 17 6 11.3590 -3.6389 6.1447 18 7 10.6478 -4.1395 7.1300 19 14 13.1878 -4.0032 6.0340 20 1 13.9506 -2.7304 6.0936 21 1 13.5887 -4.8736 7.1685 22 1 13.4781 -4.6947 4.7523 23 7 6.5411 -1.0521 2.1570 24 6 3.5806 -1.1973 -0.0048 25 6 2.1982 -1.1972 0.0000 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8900 0.5138 29 1 1.6584 2.1324 -0.0005 30 1 4.1206 2.1323 -0.0010 31 1 6.1422 0.8895 -0.5142 32 1 6.1420 -0.8904 -0.5135 33 1 7.1314 -0.9909 5.3679 34 1 6.7833 -2.4328 4.3840 35 1 8.8838 -2.9396 5.9947 36 1 11.0722 -4.6990 7.7990 37 1 4.1205 -2.1325 -0.0089 38 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190686521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:13 Heat of formation + Delta-G solvation = 84.781868 kcal Electronic energy + Delta-G solvation = -22771.157894 eV Core-core repulsion = 19229.516096 eV Total energy + Delta-G solvation = -3541.641797 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.34431 -40.42087 -40.26884 -36.57777 -36.02711 -35.21811 -33.77050 -33.44375 -31.80379 -31.13588 -29.56259 -27.00245 -26.34939 -24.44416 -23.56076 -23.43508 -21.68995 -21.56076 -20.21901 -18.87548 -18.32606 -17.48785 -16.94899 -16.56663 -16.38451 -16.27942 -15.94107 -15.87790 -15.55650 -14.99189 -14.63012 -14.47459 -14.27523 -13.89961 -13.79539 -13.59910 -13.50272 -13.04865 -12.91935 -12.73406 -12.60446 -12.54421 -12.22123 -12.16085 -12.11593 -11.99314 -11.78805 -11.65200 -11.26238 -10.56826 -10.17902 -9.80747 -9.44677 -8.57742 -6.07881 0.15757 0.33125 0.52334 0.90357 1.18534 1.32230 1.40970 1.50848 1.77984 2.23297 2.70028 2.85610 3.04105 3.14941 3.30393 3.82028 3.87287 3.93518 4.01597 4.09381 4.11616 4.17930 4.38510 4.48627 4.61045 4.69575 4.77474 4.79939 4.86344 4.89869 4.99733 5.10533 5.21768 5.30809 5.32346 5.51474 5.70040 5.72183 5.82432 6.13374 6.39802 6.97066 7.30756 7.33243 7.85252 8.58043 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.033593 B = 0.002541 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.302003 B =11017.716880 C =11269.924468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.131 4.131 4 C -0.110 4.110 5 C -0.102 4.102 6 C 0.023 3.977 7 C 0.167 3.833 8 N -0.303 5.303 9 N -0.073 5.073 10 N -0.112 5.112 11 C 0.121 3.879 12 C 0.422 3.578 13 O -0.631 6.631 14 N -0.544 5.544 15 C -0.339 4.339 16 H 0.078 0.922 17 C -0.001 4.001 18 N -0.906 5.906 19 Si 0.992 3.008 20 H -0.273 1.273 21 H -0.266 1.266 22 H -0.272 1.272 23 N -0.310 5.310 24 C -0.112 4.112 25 C -0.131 4.131 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.119 0.881 32 H 0.112 0.888 33 H 0.169 0.831 34 H 0.168 0.832 35 H 0.405 0.595 36 H 0.283 0.717 37 H 0.128 0.872 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.510 4.308 -10.294 22.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.128 4.128 5 C -0.103 4.103 6 C -0.017 4.017 7 C -0.115 4.115 8 N -0.174 5.174 9 N -0.066 5.066 10 N -0.024 5.024 11 C -0.002 4.002 12 C 0.207 3.793 13 O -0.519 6.519 14 N -0.181 5.181 15 C -0.469 4.469 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.545 5.545 19 Si 0.815 3.185 20 H -0.198 1.198 21 H -0.190 1.190 22 H -0.197 1.197 23 N -0.160 5.160 24 C -0.130 4.130 25 C -0.149 4.149 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.137 0.863 32 H 0.131 0.869 33 H 0.187 0.813 34 H 0.185 0.815 35 H 0.241 0.759 36 H 0.093 0.907 37 H 0.146 0.854 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.806 4.693 -10.067 21.841 hybrid contribution 0.925 -0.620 0.171 1.127 sum -17.881 4.073 -9.896 20.838 Atomic orbital electron populations 1.20839 0.89378 1.03505 1.03203 1.20325 0.97569 0.93022 0.98412 1.21291 0.93878 0.98593 1.01115 1.21281 0.94857 0.97794 0.98847 1.19592 0.93612 0.94210 1.02873 1.18999 0.91880 1.06859 0.83978 1.25974 1.00916 0.83970 1.00648 1.75690 1.16812 1.27023 0.97900 1.78853 1.15644 0.94754 1.17394 1.49554 1.37969 1.04481 1.10405 1.22190 0.94435 0.97094 0.86466 1.20289 0.89486 0.84507 0.85025 1.90596 1.66404 1.57260 1.37598 1.41670 1.09324 1.42829 1.24235 1.19587 0.84886 1.30641 1.11760 0.90382 1.26026 1.04589 0.95345 0.94367 1.69627 1.38553 1.32962 1.13401 0.84999 0.76715 0.78456 0.78280 1.19828 1.19047 1.19725 1.74583 1.18459 1.28642 0.94326 1.21265 0.94884 0.97758 0.99099 1.21279 0.93851 0.98605 1.01199 0.90026 0.90896 0.90821 0.84262 0.85091 0.86285 0.86926 0.81332 0.81488 0.75918 0.90741 0.85383 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 2 C -0.09 -1.61 5.88 -19.86 -0.12 -1.73 16 3 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 4 C -0.11 -2.28 9.70 22.27 0.22 -2.07 16 5 C -0.10 -2.28 5.12 -19.87 -0.10 -2.38 16 6 C 0.02 0.54 5.97 29.10 0.17 0.72 16 7 C 0.17 5.58 7.60 138.55 1.05 6.64 16 8 N -0.30 -11.33 12.50 -51.26 -0.64 -11.97 16 9 N -0.07 -2.90 13.25 37.02 0.49 -2.41 16 10 N -0.11 -4.19 3.49 -190.97 -0.67 -4.85 16 11 C 0.12 3.91 7.08 85.63 0.61 4.52 16 12 C 0.42 19.17 7.85 87.66 0.69 19.85 16 13 O -0.63 -35.31 16.01 -3.05 -0.05 -35.36 16 14 N -0.54 -25.87 5.29 -307.00 -1.62 -27.50 16 15 C -0.34 -18.37 9.68 84.04 0.81 -17.55 16 16 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 17 C 0.00 -0.06 5.50 84.93 0.47 0.41 16 18 N -0.91 -45.61 13.05 21.66 0.28 -45.33 16 19 Si 0.99 41.04 29.55 68.60 2.03 43.07 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 N -0.31 -11.30 12.13 -51.20 -0.62 -11.92 16 24 C -0.11 -2.37 9.70 22.27 0.22 -2.15 16 25 C -0.13 -2.42 9.70 22.27 0.22 -2.21 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 28 H 0.07 0.72 8.09 -2.39 -0.02 0.70 16 29 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 30 H 0.13 2.49 8.06 -2.91 -0.02 2.46 16 31 H 0.12 2.40 8.09 -2.39 -0.02 2.38 16 32 H 0.11 2.38 8.08 -2.39 -0.02 2.36 16 33 H 0.17 4.15 8.14 -2.39 -0.02 4.13 16 34 H 0.17 4.11 8.14 -2.38 -0.02 4.09 16 35 H 0.41 17.44 7.90 -92.71 -0.73 16.70 16 36 H 0.28 13.34 8.31 -92.71 -0.77 12.57 16 37 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 38 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -72.65 342.46 4.73 -67.92 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.37 Total: 27.03 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 5.16 Total: 1.33 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -2.78 Total: -103.98 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -0.05 Total: -35.36 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -72.65 4.73 -67.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190686521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.697 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds