Wall clock time and date at job start Tue Mar 31 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.89158 * 2 1 4 4 C 1.54481 * 110.04912 * 238.84543 * 2 1 3 5 5 C 1.55957 * 102.65480 * 217.76928 * 4 2 1 6 6 H 1.09005 * 112.77579 * 156.80333 * 5 4 2 7 7 C 1.53013 * 107.23545 * 281.09950 * 5 4 2 8 8 C 1.50109 * 112.10576 * 161.88463 * 7 5 4 9 9 C 1.53246 * 109.16017 * 299.38423 * 8 7 5 10 10 C 1.52867 * 108.42118 * 62.45155 * 9 8 7 11 11 C 1.51183 * 111.23898 * 300.78894 * 10 9 8 12 12 H 1.09008 * 108.58418 * 173.89079 * 11 10 9 13 13 N 1.46526 * 112.51150 * 293.98148 * 11 10 9 14 14 S 1.65600 * 126.02063 * 329.54288 * 13 11 10 15 15 O 1.42102 * 104.27716 * 33.25483 * 14 13 11 16 16 O 1.42104 * 104.27556 * 161.10753 * 14 13 11 17 17 C 1.81389 * 104.45088 * 277.17955 * 14 13 11 18 18 C 1.53004 * 109.47530 * 178.27256 * 17 14 13 19 19 C 1.50693 * 109.47407 * 180.02562 * 18 17 14 20 20 H 1.07998 * 120.00257 * 359.97438 * 19 18 17 21 21 C 1.37876 * 120.00188 * 180.02562 * 19 18 17 22 22 N 1.31521 * 119.99818 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00221 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46951 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.47031 * 209.99446 * 23 21 19 26 26 H 1.48493 * 109.47127 * 329.99864 * 23 21 19 27 27 H 1.09004 * 109.47292 * 298.93517 * 1 2 3 28 28 H 1.08996 * 109.47403 * 58.93903 * 1 2 3 29 29 H 1.09003 * 109.46937 * 178.94036 * 1 2 3 30 30 H 1.08992 * 110.77481 * 99.47416 * 4 2 1 31 31 H 1.09000 * 110.76865 * 336.05735 * 4 2 1 32 32 H 1.08999 * 109.23542 * 282.98674 * 7 5 4 33 33 H 1.08998 * 109.23485 * 42.36754 * 7 5 4 34 34 H 1.09001 * 109.96974 * 179.11296 * 8 7 5 35 35 H 1.08998 * 108.89447 * 59.00305 * 8 7 5 36 36 H 1.09002 * 109.67650 * 302.71478 * 9 8 7 37 37 H 1.09004 * 109.70562 * 182.20139 * 9 8 7 38 38 H 1.08996 * 109.12914 * 180.33258 * 10 9 8 39 39 H 1.09003 * 109.12718 * 61.23415 * 10 9 8 40 40 H 1.09004 * 109.47645 * 298.27494 * 17 14 13 41 41 H 1.09006 * 109.46947 * 58.27304 * 17 14 13 42 42 H 1.08996 * 109.46965 * 300.00469 * 18 17 14 43 43 H 1.08998 * 109.46673 * 60.00038 * 18 17 14 44 44 H 0.96997 * 120.00059 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0596 -0.7508 -1.2419 5 6 3.3067 -1.5011 -0.6815 6 1 3.5751 -2.3752 -1.2748 7 6 4.4460 -0.4835 -0.5929 8 6 5.5472 -0.9462 0.3164 9 6 4.9842 -1.1438 1.7279 10 6 3.9201 -2.2400 1.6745 11 6 2.8024 -1.8725 0.7252 12 1 2.1276 -2.7240 0.6368 13 7 2.0317 -0.7151 1.1872 14 16 1.7709 -0.2858 2.7652 15 8 2.9592 -0.6810 3.4369 16 8 1.3875 1.0809 2.6978 17 6 0.3716 -1.3144 3.2888 18 6 0.0579 -1.0379 4.7606 19 6 -1.1042 -1.8929 5.1958 20 1 -1.5725 -2.5659 4.4929 21 6 -1.5703 -1.8153 6.4911 22 7 -1.0003 -0.9954 7.3470 23 14 -3.0112 -2.8747 7.0303 24 1 -2.5055 -4.1692 7.5533 25 1 -3.7700 -2.1726 8.0964 26 1 -3.9036 -3.1242 5.8699 27 1 -0.3634 0.4972 0.8994 28 1 -0.3634 0.5302 -0.8803 29 1 -0.3633 -1.0275 -0.0190 30 1 2.3497 -0.0487 -2.0235 31 1 1.3171 -1.4578 -1.6119 32 1 4.8533 -0.3128 -1.5894 33 1 4.0587 0.4558 -0.1982 34 1 6.3455 -0.2045 0.3416 35 1 5.9389 -1.8925 -0.0568 36 1 4.5360 -0.2139 2.0778 37 1 5.7851 -1.4424 2.4045 38 1 3.5074 -2.3860 2.6727 39 1 4.3812 -3.1694 1.3404 40 1 -0.5013 -1.0774 2.6806 41 1 0.6271 -2.3666 3.1632 42 1 0.9307 -1.2749 5.3689 43 1 -0.1976 0.0142 4.8862 44 1 -1.3279 -0.9411 8.2583 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245339044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:46 Heat of formation + Delta-G solvation = -111.821491 kcal Electronic energy + Delta-G solvation = -24583.474797 eV Core-core repulsion = 21239.999182 eV Total energy + Delta-G solvation = -3343.475615 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.17513 -38.35181 -37.02657 -36.29284 -35.93400 -33.27468 -33.16915 -31.60048 -29.95552 -27.65990 -26.63576 -23.86099 -23.54677 -22.71950 -21.92182 -20.59324 -19.57133 -18.84347 -17.90711 -17.25222 -17.06711 -16.57283 -16.45393 -15.79323 -15.47613 -15.26387 -15.14360 -14.87926 -14.46238 -13.99443 -13.82693 -13.75839 -13.50499 -13.31240 -13.20000 -12.96422 -12.92230 -12.82201 -12.58451 -12.49471 -12.43674 -12.28728 -12.21388 -12.12694 -12.08162 -11.76113 -11.44201 -11.25659 -11.14615 -10.88752 -10.73955 -10.67887 -9.78111 -8.28924 -6.43857 -0.71914 1.38634 1.41024 1.52246 1.77957 2.35911 2.84800 3.04101 3.11270 3.50897 3.69892 3.84437 3.97633 4.04670 4.10123 4.13629 4.29185 4.42037 4.45025 4.52461 4.60406 4.66097 4.68421 4.71965 4.76287 4.84466 4.98989 5.06786 5.12819 5.12916 5.19897 5.21183 5.23477 5.33509 5.36880 5.40586 5.49207 5.50226 5.55226 5.63514 5.65022 5.80742 6.02407 6.69298 7.26631 8.83561 Molecular weight = 301.15amu Principal moments of inertia in cm(-1) A = 0.024004 B = 0.004461 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.175892 B = 6275.344098 C = 6653.493019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.141 3.859 3 H 0.062 0.938 4 C -0.109 4.109 5 C -0.081 4.081 6 H 0.127 0.873 7 C -0.113 4.113 8 C -0.117 4.117 9 C -0.113 4.113 10 C -0.146 4.146 11 C 0.146 3.854 12 H 0.082 0.918 13 N -1.000 6.000 14 S 2.622 3.378 15 O -0.974 6.974 16 O -1.000 7.000 17 C -0.591 4.591 18 C 0.024 3.976 19 C -0.540 4.540 20 H 0.075 0.925 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.976 3.024 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.257 1.257 27 H 0.033 0.967 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.133 0.867 41 H 0.138 0.862 42 H 0.006 0.994 43 H 0.000 1.000 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.511 -3.698 -22.283 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.036 3.964 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.100 4.100 6 H 0.145 0.855 7 C -0.151 4.151 8 C -0.155 4.155 9 C -0.151 4.151 10 C -0.184 4.184 11 C 0.041 3.959 12 H 0.100 0.900 13 N -0.839 5.839 14 S 2.721 3.279 15 O -0.964 6.964 16 O -0.990 6.990 17 C -0.722 4.722 18 C -0.014 4.014 19 C -0.579 4.579 20 H 0.093 0.907 21 C -0.202 4.202 22 N -0.574 5.574 23 Si 0.799 3.201 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.181 1.181 27 H 0.053 0.947 28 H 0.114 0.886 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.024 0.976 43 H 0.019 0.981 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.995 -2.929 -21.543 23.528 hybrid contribution -1.147 -0.295 1.293 1.753 sum 7.848 -3.224 -20.250 21.956 Atomic orbital electron populations 1.22433 0.95065 1.03527 1.03003 1.21578 0.93946 0.95893 0.84963 0.91945 1.22982 0.97251 0.99689 0.94863 1.22420 0.94694 0.99338 0.93590 0.85493 1.21057 0.95556 0.98202 1.00265 1.21104 0.97860 1.02227 0.94270 1.21477 0.97742 0.98610 0.97280 1.21727 0.96836 0.99880 0.99976 1.21152 0.92252 0.87399 0.95103 0.89988 1.58421 1.65210 1.39682 1.20584 1.04393 0.76169 0.74530 0.72768 1.93536 1.44268 1.83874 1.74731 1.93465 1.85536 1.33893 1.86141 1.30468 1.18819 1.15904 1.07023 1.18776 0.97691 0.96718 0.88247 1.21486 1.15656 1.23788 0.96947 0.90710 1.26147 1.00406 0.96926 0.96698 1.70111 1.43217 1.38527 1.05580 0.85287 0.78209 0.78287 0.78336 1.19385 1.20687 1.18107 0.94742 0.88576 0.90448 0.88288 0.88487 0.89679 0.94214 0.92150 0.90226 0.94574 0.92916 0.91899 0.88579 0.84860 0.84352 0.97568 0.98144 0.92317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 9.22 71.98 0.66 -3.24 16 2 C 0.14 3.14 2.56 45.32 0.12 3.25 16 3 H 0.06 1.55 7.86 -2.39 -0.02 1.53 16 4 C -0.11 -1.44 5.86 32.12 0.19 -1.25 16 5 C -0.08 -1.16 3.68 -9.43 -0.03 -1.20 16 6 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 7 C -0.11 -1.89 4.77 29.67 0.14 -1.75 16 8 C -0.12 -2.21 5.83 29.75 0.17 -2.03 16 9 C -0.11 -3.06 5.25 30.63 0.16 -2.90 16 10 C -0.15 -3.65 4.76 29.96 0.14 -3.51 16 11 C 0.15 3.13 2.97 44.72 0.13 3.27 16 12 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 13 N -1.00 -27.53 2.94 -467.95 -1.38 -28.91 16 14 S 2.62 101.80 5.10 -56.49 -0.29 101.51 16 15 O -0.97 -41.55 12.16 -127.65 -1.55 -43.10 16 16 O -1.00 -45.23 16.95 -127.65 -2.16 -47.40 16 17 C -0.59 -24.02 6.11 71.98 0.44 -23.58 16 18 C 0.02 1.34 4.98 29.85 0.15 1.49 16 19 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 20 H 0.07 3.93 7.74 -2.91 -0.02 3.91 16 21 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 22 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 23 Si 0.98 43.78 29.54 68.60 2.03 45.81 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 27 H 0.03 0.95 7.33 -2.39 -0.02 0.93 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.44 8.13 -2.39 -0.02 1.42 16 30 H 0.10 0.97 7.99 -2.39 -0.02 0.95 16 31 H 0.10 0.95 7.86 -2.39 -0.02 0.93 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.04 0.85 6.98 -2.39 -0.02 0.83 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.04 1.21 6.25 -2.39 -0.01 1.20 16 37 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.06 1.98 5.86 -2.39 -0.01 1.97 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.13 4.92 8.07 -2.39 -0.02 4.90 16 41 H 0.14 4.94 8.14 -2.39 -0.02 4.92 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -75.90 343.79 0.86 -75.05 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.96 Total: 16.37 kcal Atomic # 6 Polarization: -64.65 SS G_CDS: 2.97 Total: -61.68 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -1.09 Total: -86.56 kcal Atomic # 8 Polarization: -86.78 SS G_CDS: -3.72 Total: -90.50 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 101.80 SS G_CDS: -0.29 Total: 101.51 kcal Total: -75.90 0.86 -75.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245339044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.776 kcal (2) G-P(sol) polarization free energy of solvation -75.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds