Wall clock time and date at job start Tue Mar 31 2020 04:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28515 * 124.44465 * 2 1 4 4 C 1.31129 * 109.06014 * 179.97438 * 3 2 1 5 5 C 1.40920 * 105.77404 * 359.97438 * 4 3 2 6 6 C 1.47808 * 127.23728 * 179.97438 * 5 4 3 7 7 O 1.21560 * 119.99868 * 5.81906 * 6 5 4 8 8 N 1.34776 * 120.00191 * 185.81628 * 6 5 4 9 9 C 1.46497 * 119.99918 * 355.61095 * 8 6 5 10 10 C 1.50698 * 109.47357 * 276.41587 * 9 8 6 11 11 H 1.07997 * 120.00276 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99812 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00119 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99897 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47220 * 89.99877 * 14 12 10 16 16 H 1.48499 * 109.46975 * 210.00332 * 14 12 10 17 17 H 1.48500 * 109.46887 * 329.99990 * 14 12 10 18 18 C 1.46500 * 119.99866 * 175.61907 * 8 6 5 19 19 C 1.50697 * 109.47508 * 89.99745 * 18 8 6 20 20 C 1.38226 * 119.61761 * 94.97187 * 19 18 8 21 21 C 1.38627 * 119.15955 * 179.79122 * 20 19 18 22 22 C 1.38673 * 118.42024 * 0.47598 * 21 20 19 23 23 C 1.38184 * 119.16232 * 359.50588 * 22 21 20 24 24 N 1.31856 * 119.61743 * 275.00007 * 19 18 8 25 25 N 1.28585 * 124.44013 * 180.26039 * 2 1 3 26 26 H 1.09003 * 109.47125 * 90.02339 * 1 2 3 27 27 H 1.09002 * 109.47100 * 210.02652 * 1 2 3 28 28 H 1.09002 * 109.47026 * 330.02768 * 1 2 3 29 29 H 1.07999 * 127.11584 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47112 * 36.41429 * 9 8 6 31 31 H 1.08998 * 109.46927 * 156.41734 * 9 8 6 32 32 H 0.97001 * 119.99990 * 180.02562 * 13 12 10 33 33 H 1.08997 * 109.46856 * 329.99643 * 18 8 6 34 34 H 1.09001 * 109.46874 * 209.99856 * 18 8 6 35 35 H 1.07992 * 120.42269 * 0.02562 * 20 19 18 36 36 H 1.08007 * 120.79231 * 180.23549 * 21 20 19 37 37 H 1.08002 * 120.41807 * 179.78287 * 22 21 20 38 38 H 1.08003 * 119.61451 * 180.25076 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4562 0.7119 0.0006 5 6 3.4658 -0.6972 0.0015 6 6 4.6486 -1.5836 0.0019 7 8 5.7631 -1.1099 0.1081 8 7 4.4915 -2.9170 -0.1154 9 6 3.1463 -3.4962 -0.1466 10 6 2.6440 -3.6759 1.2628 11 1 3.2645 -3.3873 2.0982 12 6 1.3916 -4.2080 1.4857 13 7 0.6357 -4.5591 0.4684 14 14 0.7687 -4.4302 3.2328 15 1 0.0513 -3.2030 3.6623 16 1 -0.1583 -5.5892 3.2841 17 1 1.9180 -4.6751 4.1407 18 6 5.6661 -3.7873 -0.2117 19 6 6.0908 -4.2127 1.1702 20 6 5.6462 -5.4179 1.6807 21 6 6.0462 -5.8020 2.9513 22 6 6.8741 -4.9511 3.6680 23 6 7.2783 -3.7618 3.0920 24 7 6.8816 -3.4308 1.8786 25 7 2.1922 -1.0605 -0.0048 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3633 -0.8898 0.5143 28 1 -0.3633 0.8903 0.5134 29 1 4.3130 1.3694 0.0003 30 1 2.4760 -2.8292 -0.6888 31 1 3.1789 -4.4640 -0.6468 32 1 -0.2454 -4.9331 0.6253 33 1 6.4812 -3.2456 -0.6916 34 1 5.4178 -4.6687 -0.8029 35 1 4.9986 -6.0540 1.0958 36 1 5.7178 -6.7398 3.3745 37 1 7.2024 -5.2166 4.6620 38 1 7.9264 -3.0955 3.6420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284101390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:21 Heat of formation + Delta-G solvation = 112.082857 kcal Electronic energy + Delta-G solvation = -24837.694560 eV Core-core repulsion = 21297.236622 eV Total energy + Delta-G solvation = -3540.457937 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 301.128 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.47404 -41.20316 -40.12029 -36.82518 -34.71742 -34.49837 -33.65965 -33.23354 -32.45135 -29.39463 -28.99644 -27.51491 -25.19380 -24.45681 -24.14426 -22.87815 -22.78253 -20.46520 -18.69024 -18.14739 -17.90952 -17.71696 -17.60945 -16.99110 -16.83496 -16.45789 -16.28173 -15.60659 -15.47248 -14.87147 -14.38401 -14.24406 -14.03247 -13.94019 -13.70649 -13.63687 -13.50000 -13.11838 -12.83143 -12.70195 -12.65297 -12.53402 -12.11318 -11.66091 -11.36479 -11.27708 -11.06391 -10.68342 -10.43454 -10.29882 -10.27953 -9.85758 -9.41367 -8.06594 -6.11804 0.23345 0.49498 0.54398 1.03463 1.33847 1.38733 1.45448 1.46850 2.23523 2.42388 2.47031 3.04143 3.15462 3.25269 3.49225 3.80606 3.94970 4.07635 4.15448 4.28227 4.32367 4.33686 4.36023 4.53330 4.58327 4.63290 4.83347 4.84027 4.94120 4.98314 5.06498 5.30728 5.36501 5.40559 5.69534 5.89067 5.90463 5.92434 6.24166 6.51475 6.90273 7.20373 7.22851 7.37941 7.53103 9.00255 Molecular weight = 301.13amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.007298 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.464020 B = 3835.859192 C = 5336.636748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.153 5.153 3 N -0.305 5.305 4 C 0.024 3.976 5 C -0.074 4.074 6 C 0.600 3.400 7 O -0.559 6.559 8 N -0.582 5.582 9 C 0.245 3.755 10 C -0.495 4.495 11 H 0.024 0.976 12 C 0.041 3.959 13 N -0.909 5.909 14 Si 0.927 3.073 15 H -0.284 1.284 16 H -0.278 1.278 17 H -0.283 1.283 18 C 0.168 3.832 19 C 0.100 3.900 20 C -0.148 4.148 21 C -0.088 4.088 22 C -0.170 4.170 23 C 0.073 3.927 24 N -0.494 5.494 25 N -0.208 5.208 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.224 0.776 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.402 1.353 1.277 3.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.057 5.057 3 N -0.144 5.144 4 C -0.160 4.160 5 C -0.236 4.236 6 C 0.386 3.614 7 O -0.437 6.437 8 N -0.312 5.312 9 C 0.125 3.875 10 C -0.534 4.534 11 H 0.042 0.958 12 C -0.159 4.159 13 N -0.549 5.549 14 Si 0.754 3.246 15 H -0.210 1.210 16 H -0.203 1.203 17 H -0.208 1.208 18 C 0.045 3.955 19 C -0.038 4.038 20 C -0.168 4.168 21 C -0.114 4.114 22 C -0.190 4.190 23 C -0.085 4.085 24 N -0.204 5.204 25 N -0.056 5.056 26 H 0.129 0.871 27 H 0.115 0.885 28 H 0.146 0.854 29 H 0.240 0.760 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.155 0.845 36 H 0.174 0.826 37 H 0.182 0.818 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.684 2.291 0.886 3.638 hybrid contribution -0.066 -1.022 1.444 1.770 sum 2.618 1.270 2.330 3.727 Atomic orbital electron populations 1.22520 0.68124 1.06762 1.06648 1.48751 1.10474 0.99190 1.47248 1.73828 1.03609 1.16255 1.20756 1.25042 0.94938 0.93169 1.02834 1.23135 0.91838 0.95091 1.13539 1.16919 0.85940 0.82052 0.76489 1.90717 1.24795 1.75878 1.52343 1.48051 1.08903 1.04848 1.69364 1.19535 0.77158 0.93916 0.96902 1.21100 1.00225 1.40362 0.91745 0.95797 1.25154 0.96547 0.95631 0.98584 1.69977 1.10565 1.43721 1.30623 0.86059 0.78128 0.77635 0.82732 1.20994 1.20305 1.20811 1.20346 0.88187 0.95072 0.91931 1.21600 0.93658 0.91104 0.97441 1.22098 0.99388 0.97634 0.97713 1.21914 0.95280 1.00622 0.93551 1.22444 0.99062 0.95333 1.02176 1.23175 0.98128 0.95941 0.91221 1.67517 1.11653 1.32962 1.08287 1.75289 1.03033 1.13675 1.13608 0.87054 0.88512 0.85397 0.75971 0.92462 0.95800 0.92800 0.89447 0.87151 0.84544 0.82558 0.81774 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.48 11.55 127.77 1.48 3.96 16 2 N -0.15 -5.54 4.34 -206.53 -0.90 -6.44 16 3 N -0.30 -10.73 12.01 -56.17 -0.67 -11.40 16 4 C 0.02 0.86 12.05 85.46 1.03 1.89 16 5 C -0.07 -3.22 6.86 42.24 0.29 -2.93 16 6 C 0.60 27.47 7.62 86.78 0.66 28.13 16 7 O -0.56 -26.62 16.58 -3.90 -0.06 -26.69 16 8 N -0.58 -25.75 2.46 -833.98 -2.05 -27.80 16 9 C 0.25 11.78 4.81 85.63 0.41 12.19 16 10 C -0.50 -25.62 8.52 25.60 0.22 -25.41 16 11 H 0.02 1.35 7.81 -2.91 -0.02 1.33 16 12 C 0.04 2.10 5.46 84.66 0.46 2.56 16 13 N -0.91 -47.71 13.29 21.45 0.28 -47.43 16 14 Si 0.93 41.94 29.54 68.60 2.03 43.96 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 16 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 17 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 18 C 0.17 6.43 5.72 85.63 0.49 6.92 16 19 C 0.10 3.87 6.36 42.55 0.27 4.15 16 20 C -0.15 -5.13 9.72 22.36 0.22 -4.91 16 21 C -0.09 -2.56 10.18 22.47 0.23 -2.33 16 22 C -0.17 -4.62 10.11 22.36 0.23 -4.39 16 23 C 0.07 2.32 11.18 84.67 0.95 3.26 16 24 N -0.49 -19.55 10.27 -183.89 -1.89 -21.44 16 25 N -0.21 -9.04 8.08 -48.16 -0.39 -9.43 16 26 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.10 2.71 8.14 -2.39 -0.02 2.70 16 28 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.22 6.69 8.06 -2.91 -0.02 6.66 16 30 H 0.06 2.93 5.33 -2.39 -0.01 2.92 16 31 H 0.02 1.18 7.82 -2.39 -0.02 1.16 16 32 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 33 H 0.09 3.33 7.49 -2.39 -0.02 3.31 16 34 H 0.11 3.61 7.75 -2.39 -0.02 3.60 16 35 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 36 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 37 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 38 H 0.17 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -69.54 337.25 4.36 -65.18 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.08 Total: 18.39 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: 6.93 Total: 23.10 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -5.62 Total: -123.94 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.06 Total: -26.69 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Total: -69.54 4.36 -65.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284101390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.266 kcal (2) G-P(sol) polarization free energy of solvation -69.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds