Wall clock time and date at job start Tue Mar 31 2020 03:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47237 * 2 1 4 4 C 1.50697 * 109.47109 * 239.99983 * 2 1 3 5 5 H 1.07999 * 120.00028 * 245.62169 * 4 2 1 6 6 C 1.37877 * 119.99883 * 65.61495 * 4 2 1 7 7 N 1.31512 * 119.99916 * 196.97349 * 6 4 2 8 8 Si 1.86798 * 120.00059 * 17.25803 * 6 4 2 9 9 H 1.48500 * 109.47180 * 179.71899 * 8 6 4 10 10 H 1.48497 * 109.47063 * 299.72121 * 8 6 4 11 11 H 1.48504 * 109.46829 * 59.72088 * 8 6 4 12 12 N 1.46501 * 109.47066 * 120.00088 * 2 1 3 13 13 C 1.46502 * 119.99990 * 59.99653 * 12 2 1 14 14 S 1.65606 * 119.99949 * 239.99956 * 12 2 1 15 15 O 1.42098 * 106.40018 * 203.54140 * 14 12 2 16 16 O 1.42101 * 106.40004 * 336.45806 * 14 12 2 17 17 N 1.65598 * 107.21806 * 89.99829 * 14 12 2 18 18 C 1.46509 * 119.99878 * 64.99978 * 17 14 12 19 19 C 1.53002 * 109.47091 * 164.99721 * 18 17 14 20 20 N 1.46496 * 109.47202 * 179.97438 * 19 18 17 21 21 C 1.36340 * 125.63687 * 269.69864 * 20 19 18 22 22 C 1.34854 * 108.21380 * 179.83028 * 21 20 19 23 23 C 1.40885 * 107.41942 * 0.42339 * 22 21 20 24 24 C 1.34847 * 107.41819 * 359.73354 * 23 22 21 25 25 H 1.09001 * 109.47142 * 185.89183 * 1 2 3 26 26 H 1.09007 * 109.46976 * 305.88510 * 1 2 3 27 27 H 1.08995 * 109.46948 * 65.88885 * 1 2 3 28 28 H 0.97003 * 120.00480 * 355.09525 * 7 6 4 29 29 H 1.09001 * 109.46622 * 90.00156 * 13 12 2 30 30 H 1.08999 * 109.47047 * 209.99757 * 13 12 2 31 31 H 1.08998 * 109.47596 * 330.00148 * 13 12 2 32 32 H 0.96997 * 120.00015 * 245.00257 * 17 14 12 33 33 H 1.09001 * 109.47073 * 285.00005 * 18 17 14 34 34 H 1.09002 * 109.46675 * 44.99867 * 18 17 14 35 35 H 1.08993 * 109.46936 * 300.00527 * 19 18 17 36 36 H 1.09006 * 109.46519 * 59.99941 * 19 18 17 37 37 H 1.08001 * 125.89094 * 359.96031 * 21 20 19 38 38 H 1.08002 * 126.28765 * 180.15960 * 22 21 20 39 39 H 1.08001 * 126.29215 * 179.73974 * 23 22 21 40 40 H 1.07998 * 125.89039 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1339 6 6 1.7973 -0.1757 -2.4794 7 7 1.9262 -0.9269 -3.5511 8 14 1.3036 1.6178 -2.6497 9 1 1.1175 1.9457 -4.0861 10 1 0.0321 1.8527 -1.9195 11 1 2.3689 2.4808 -2.0790 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 16 2.9705 0.1142 2.2863 15 8 3.7119 -0.8789 2.9814 16 8 3.5795 1.1829 1.5748 17 7 1.9608 0.8091 3.3998 18 6 1.1509 -0.0353 4.2817 19 6 0.6087 0.8075 5.4379 20 7 -0.2016 -0.0366 6.3194 21 6 -1.5432 -0.2491 6.2028 22 6 -1.9254 -1.0828 7.1915 23 6 -0.7795 -1.3885 7.9519 24 6 0.2604 -0.7348 7.3955 25 1 -0.3633 -1.0222 0.1055 26 1 -0.3633 0.6024 0.8327 27 1 -0.3633 0.4198 -0.9380 28 1 2.2550 -1.8359 -3.4697 29 1 2.4157 -2.7377 0.9717 30 1 1.6238 -2.2852 2.5002 31 1 0.6904 -2.3003 0.9847 32 1 1.9055 1.7750 3.4681 33 1 0.3188 -0.4567 3.7178 34 1 1.7670 -0.8424 4.6782 35 1 1.4408 1.2289 6.0017 36 1 -0.0073 1.6147 5.0413 37 1 -2.1882 0.1752 5.4476 38 1 -2.9268 -1.4456 7.3703 39 1 -0.7410 -2.0289 8.8207 40 1 1.2829 -0.7603 7.7422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330417016.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:57:17 Heat of formation + Delta-G solvation = -44.070365 kcal Electronic energy + Delta-G solvation = -23163.745711 eV Core-core repulsion = 19719.667662 eV Total energy + Delta-G solvation = -3444.078049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95360 -38.48121 -38.11100 -37.08495 -36.99459 -34.63502 -33.36437 -31.61036 -29.60722 -28.65396 -27.36063 -26.61077 -24.20091 -22.51462 -21.32360 -20.95241 -20.35267 -19.59956 -19.01901 -18.51953 -17.93732 -17.47745 -16.64453 -16.01003 -15.82712 -15.44914 -15.08275 -14.96389 -14.74632 -14.50052 -14.28093 -14.02746 -13.71521 -13.48451 -13.42020 -13.33656 -13.29555 -13.22364 -12.95456 -12.90019 -12.76440 -12.61845 -12.45393 -12.19608 -11.80620 -11.56394 -11.16055 -10.68192 -10.44580 -9.90459 -9.51144 -9.01596 -8.71156 -6.36662 -0.49232 1.39399 1.44470 1.57487 1.70385 1.79626 2.18462 2.20091 2.48001 2.57055 3.07540 3.29820 3.68520 3.76260 3.88500 4.20976 4.27246 4.38267 4.44637 4.46012 4.48918 4.60977 4.72977 4.76410 4.80115 4.83610 4.85658 4.94414 5.02169 5.30425 5.45142 5.47763 5.57759 5.71596 5.97308 6.03739 6.06831 6.13410 6.36742 6.53862 6.60538 7.41052 8.64423 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.021812 B = 0.004104 C = 0.003887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.401510 B = 6820.816106 C = 7202.095804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.244 3.756 3 H 0.045 0.955 4 C -0.608 4.608 5 H 0.024 0.976 6 C -0.017 4.017 7 N -0.936 5.936 8 Si 1.066 2.934 9 H -0.287 1.287 10 H -0.223 1.223 11 H -0.272 1.272 12 N -0.992 5.992 13 C 0.106 3.894 14 S 2.797 3.203 15 O -1.009 7.009 16 O -1.009 7.009 17 N -1.110 6.110 18 C 0.102 3.898 19 C 0.104 3.896 20 N -0.450 5.450 21 C -0.020 4.020 22 C -0.224 4.224 23 C -0.222 4.222 24 C -0.026 4.026 25 H 0.055 0.945 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.252 0.748 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.429 0.571 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.181 0.819 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 4.966 21.803 23.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.138 3.862 3 H 0.063 0.937 4 C -0.647 4.647 5 H 0.043 0.957 6 C -0.216 4.216 7 N -0.572 5.572 8 Si 0.887 3.113 9 H -0.213 1.213 10 H -0.146 1.146 11 H -0.198 1.198 12 N -0.833 5.833 13 C -0.039 4.039 14 S 2.806 3.194 15 O -0.992 6.992 16 O -0.993 6.993 17 N -0.875 5.875 18 C -0.025 4.025 19 C -0.019 4.019 20 N -0.127 5.127 21 C -0.149 4.149 22 C -0.248 4.248 23 C -0.247 4.247 24 C -0.156 4.156 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.266 0.734 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.138 0.862 37 H 0.198 0.802 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.658 6.146 20.479 22.711 hybrid contribution 0.630 -1.599 0.561 1.808 sum -7.028 4.547 21.040 22.644 Atomic orbital electron populations 1.22401 0.95798 1.01859 1.01406 1.18830 0.92846 0.92291 0.82212 0.93729 1.22420 1.39759 1.09303 0.93204 0.95731 1.27086 0.94546 1.08194 0.91789 1.70988 1.44003 1.09654 1.32505 0.83874 0.79560 0.70928 0.76974 1.21325 1.14622 1.19777 1.57408 1.70136 1.20833 1.34938 1.21297 1.01439 0.80476 1.00718 1.01234 0.73446 0.72362 0.72366 1.93531 1.69693 1.61414 1.74595 1.93568 1.75449 1.57141 1.73120 1.55571 1.61983 1.18363 1.51577 1.21685 0.95449 0.93692 0.91670 1.22057 0.96935 0.92541 0.90361 1.44140 1.07649 1.37748 1.23124 1.22277 0.84220 1.04836 1.03616 1.21198 0.99670 1.04671 0.99285 1.21192 0.93285 1.06395 1.03802 1.22242 1.00548 1.00645 0.92126 0.92589 0.91457 0.92592 0.93907 0.95326 0.89948 0.90159 0.73406 0.90341 0.90772 0.86973 0.86183 0.80197 0.84056 0.84118 0.80648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.60 8.96 71.98 0.64 -4.96 16 2 C 0.24 10.63 2.21 44.25 0.10 10.73 16 3 H 0.05 2.00 5.57 -2.39 -0.01 1.99 16 4 C -0.61 -33.47 8.68 25.60 0.22 -33.25 16 5 H 0.02 1.50 7.75 -2.91 -0.02 1.48 16 6 C -0.02 -0.98 5.30 84.65 0.45 -0.53 16 7 N -0.94 -57.77 13.70 21.45 0.29 -57.47 16 8 Si 1.07 47.93 26.29 68.60 1.80 49.74 16 9 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 10 H -0.22 -8.23 5.74 99.48 0.57 -7.66 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.99 -37.35 3.12 -520.44 -1.62 -38.97 16 13 C 0.11 3.57 9.48 127.77 1.21 4.78 16 14 S 2.80 96.27 6.09 -56.49 -0.34 95.93 16 15 O -1.01 -38.57 16.68 -128.00 -2.14 -40.70 16 16 O -1.01 -42.45 16.70 -128.00 -2.14 -44.59 16 17 N -1.11 -23.28 6.05 -187.46 -1.14 -24.42 16 18 C 0.10 1.75 6.57 86.38 0.57 2.32 16 19 C 0.10 1.23 6.23 86.38 0.54 1.77 16 20 N -0.45 -7.16 2.75 -524.49 -1.44 -8.60 16 21 C -0.02 -0.33 11.43 83.21 0.95 0.62 16 22 C -0.22 -4.12 10.86 22.14 0.24 -3.88 16 23 C -0.22 -4.15 10.86 22.14 0.24 -3.91 16 24 C -0.03 -0.45 11.43 83.21 0.95 0.50 16 25 H 0.06 1.96 6.45 -2.39 -0.02 1.94 16 26 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.06 2.13 4.85 -2.39 -0.01 2.11 16 28 H 0.25 15.84 8.73 -92.71 -0.81 15.03 16 29 H 0.03 1.07 8.09 -2.39 -0.02 1.05 16 30 H 0.08 2.19 7.79 -2.39 -0.02 2.17 16 31 H 0.08 2.55 6.33 -2.39 -0.02 2.54 16 32 H 0.43 6.57 8.65 -96.75 -0.84 5.74 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.46 7.75 -2.39 -0.02 1.44 16 35 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 38 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -76.45 340.08 -0.57 -77.02 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.03 Total: 17.89 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 6.11 Total: -25.81 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -3.91 Total: -129.46 kcal Atomic # 8 Polarization: -81.02 SS G_CDS: -4.27 Total: -85.29 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.80 Total: 49.74 kcal Atomic # 16 Polarization: 96.27 SS G_CDS: -0.34 Total: 95.93 kcal Total: -76.45 -0.57 -77.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330417016.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.953 kcal (2) G-P(sol) polarization free energy of solvation -76.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds