Wall clock time and date at job start Tue Mar 31 2020 04:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00145 * 2 1 4 4 C 1.53007 * 109.47268 * 275.39303 * 3 2 1 5 5 C 1.53007 * 117.49585 * 243.99609 * 4 3 2 6 6 C 1.53000 * 117.49793 * 175.37338 * 4 3 2 7 7 S 1.65600 * 119.99868 * 180.02562 * 2 1 3 8 8 O 1.42102 * 106.40219 * 161.06327 * 7 2 1 9 9 O 1.42092 * 106.40357 * 28.13948 * 7 2 1 10 10 N 1.65600 * 107.21705 * 274.59993 * 7 2 1 11 11 C 1.46501 * 119.99743 * 95.03847 * 10 7 2 12 12 C 1.50701 * 109.47157 * 263.91671 * 11 10 7 13 13 H 1.08002 * 120.00448 * 4.76410 * 12 11 10 14 14 C 1.37880 * 119.99907 * 184.75674 * 12 11 10 15 15 N 1.31509 * 120.00270 * 354.77454 * 14 12 11 16 16 Si 1.86804 * 119.99656 * 174.77401 * 14 12 11 17 17 H 1.48495 * 109.47285 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46927 * 120.00463 * 16 14 12 19 19 H 1.48497 * 109.46856 * 239.99861 * 16 14 12 20 20 C 1.46500 * 120.00449 * 274.76798 * 10 7 2 21 21 C 1.53001 * 109.46841 * 265.27486 * 20 10 7 22 22 C 1.47205 * 109.46896 * 179.97438 * 21 20 10 23 23 N 6.63136 * 141.31979 * 111.66450 * 2 1 3 24 24 H 1.08996 * 109.47389 * 270.00207 * 1 2 3 25 25 H 1.09001 * 109.46816 * 29.99956 * 1 2 3 26 26 H 1.08998 * 109.47216 * 149.99505 * 1 2 3 27 27 H 1.08999 * 109.47075 * 35.39288 * 3 2 1 28 28 H 1.09002 * 109.46864 * 155.39643 * 3 2 1 29 29 H 1.08998 * 115.54795 * 29.69926 * 4 3 2 30 30 H 1.08994 * 117.49970 * 359.97438 * 5 4 3 31 31 H 1.09001 * 117.49484 * 145.02194 * 5 4 3 32 32 H 1.08999 * 117.49504 * 214.97705 * 6 4 3 33 33 H 1.09004 * 117.50053 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47568 * 23.91926 * 11 10 7 35 35 H 1.09006 * 109.47359 * 143.92060 * 11 10 7 36 36 H 0.96997 * 120.00475 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46951 * 25.27400 * 20 10 7 38 38 H 1.08993 * 109.47632 * 145.27160 * 20 10 7 39 39 H 1.09001 * 109.47340 * 299.99161 * 21 20 10 40 40 H 1.08998 * 109.47255 * 59.99934 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3351 1.7782 -1.4362 5 6 3.7470 1.8827 -2.0164 6 6 2.9787 3.1512 -1.6400 7 16 2.2929 -1.4342 -0.0006 8 8 3.6102 -1.1368 -0.4429 9 8 1.4526 -2.3823 -0.6439 10 7 2.4281 -1.9228 1.5758 11 6 1.4524 -2.8596 2.1386 12 6 0.3818 -2.0910 2.8694 13 1 0.3807 -1.0113 2.8460 14 6 -0.5966 -2.7664 3.5679 15 7 -0.6568 -4.0789 3.5126 16 14 -1.8365 -1.8168 4.5927 17 1 -1.5549 -0.3625 4.4883 18 1 -3.2071 -2.0924 4.0920 19 1 -1.7336 -2.2408 6.0122 20 6 3.5268 -1.4230 2.4061 21 6 4.6858 -2.4213 2.3732 22 6 5.7900 -1.9187 3.2070 23 7 6.6417 -1.5300 3.8517 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6537 2.0022 0.5952 28 1 3.1883 1.1161 0.4279 29 1 1.5314 1.4932 -2.1151 30 1 4.5778 1.5889 -1.3749 31 1 3.8724 1.6664 -3.0773 32 1 2.5986 3.7694 -2.4533 33 1 3.3044 3.6914 -0.7510 34 1 0.9990 -3.4388 1.3342 35 1 1.9543 -3.5333 2.8332 36 1 -1.3448 -4.5540 4.0042 37 1 3.8648 -0.4610 2.0207 38 1 3.1806 -1.3018 3.4325 39 1 4.3478 -3.3832 2.7586 40 1 5.0320 -2.5424 1.3468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331752959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:20 Heat of formation + Delta-G solvation = -24.115388 kcal Electronic energy + Delta-G solvation = -23624.042448 eV Core-core repulsion = 20180.829712 eV Total energy + Delta-G solvation = -3443.212736 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -37.92759 -37.15364 -36.68251 -35.67166 -35.27616 -34.91192 -32.82890 -30.68022 -27.87734 -26.97746 -24.65882 -23.84121 -22.34068 -22.10486 -20.64985 -18.53024 -17.53944 -17.36066 -16.78438 -16.44842 -15.99715 -15.36852 -14.79229 -14.76623 -14.57836 -14.11682 -13.75304 -13.49993 -13.12291 -12.90218 -12.64450 -12.50815 -12.30821 -12.10651 -11.95997 -11.72183 -11.62409 -11.51473 -11.39630 -11.31956 -11.22652 -11.19974 -11.01322 -10.64239 -10.56383 -10.39327 -10.14607 -9.90095 -9.85625 -8.75201 -8.54303 -8.24809 -6.17933 -4.23747 1.14883 2.89159 2.95737 3.20331 3.28448 3.30167 3.34233 3.77701 3.97793 4.29556 4.32669 4.70302 4.84867 4.88078 5.01659 5.09005 5.17302 5.23386 5.29898 5.36257 5.59416 5.64896 5.68516 5.73704 5.76562 5.92770 6.01193 6.10780 6.16712 6.19395 6.29759 6.35420 6.44094 6.84846 7.21561 7.35260 7.49321 7.71967 7.78721 8.07427 8.80543 9.42503 10.90234 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.006549 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.441327 B = 4274.716148 C = 5655.349990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.005 6.005 3 C 0.158 3.842 4 C -0.174 4.174 5 C -0.171 4.171 6 C -0.180 4.180 7 S 2.784 3.216 8 O -0.990 6.990 9 O -0.973 6.973 10 N -0.992 5.992 11 C 0.241 3.759 12 C -0.540 4.540 13 H 0.064 0.936 14 C 0.066 3.934 15 N -0.887 5.887 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.142 3.858 21 C -0.054 4.054 22 C 0.222 3.778 23 N -0.452 5.452 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.410 9.522 -7.176 12.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.843 5.843 3 C 0.032 3.968 4 C -0.194 4.194 5 C -0.208 4.208 6 C -0.218 4.218 7 S 2.793 3.207 8 O -0.974 6.974 9 O -0.957 6.957 10 N -0.831 5.831 11 C 0.120 3.880 12 C -0.580 4.580 13 H 0.082 0.918 14 C -0.137 4.137 15 N -0.525 5.525 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.210 1.210 20 C 0.013 3.987 21 C -0.096 4.096 22 C -0.096 4.096 23 N -0.130 5.130 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.859 9.464 -6.901 13.097 hybrid contribution -1.366 0.477 0.749 1.629 sum 4.494 9.941 -6.152 12.525 Atomic orbital electron populations 1.21558 0.78140 1.02849 1.03105 1.57799 1.15642 1.21227 1.89630 1.20742 0.96412 0.85708 0.93965 1.22848 0.97368 1.00226 0.98966 1.23031 0.95177 1.00899 1.01718 1.22938 1.04889 0.90661 1.03283 1.01901 0.72817 0.72567 0.73445 1.93548 1.37952 1.85221 1.80721 1.93577 1.68753 1.59840 1.73542 1.57861 1.35973 1.58932 1.30358 1.19296 0.85693 0.87585 0.95470 1.21545 1.10651 0.93613 1.32144 0.91752 1.24929 0.97493 0.94803 0.96512 1.69936 1.34354 1.06627 1.41621 0.86558 0.81198 0.80125 0.80208 1.19706 1.20929 1.20957 1.20834 0.84881 0.94318 0.98654 1.19935 0.89274 1.01813 0.98576 1.29162 0.93991 0.93097 0.93307 1.81207 1.11585 1.09500 1.10676 0.91428 0.91965 0.90168 0.90306 0.90242 0.87563 0.88110 0.89114 0.89030 0.88790 0.92831 0.94043 0.92592 0.91202 0.88931 0.86440 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 10.70 59.85 0.64 1.95 16 2 N -1.01 -15.20 3.24 -121.76 -0.39 -15.60 16 3 C 0.16 1.97 5.63 -4.04 -0.02 1.95 16 4 C -0.17 -2.03 6.01 -90.61 -0.54 -2.57 16 5 C -0.17 -1.93 10.18 -26.72 -0.27 -2.20 16 6 C -0.18 -1.72 10.25 -26.73 -0.27 -1.99 16 7 S 2.78 49.41 6.01 -107.50 -0.65 48.76 16 8 O -0.99 -17.32 15.94 -57.17 -0.91 -18.23 16 9 O -0.97 -20.81 15.29 -57.17 -0.87 -21.69 16 10 N -0.99 -17.59 2.83 -115.66 -0.33 -17.91 16 11 C 0.24 5.32 5.43 -5.19 -0.03 5.29 16 12 C -0.54 -12.90 9.36 -34.44 -0.32 -13.22 16 13 H 0.06 1.48 7.10 -52.49 -0.37 1.11 16 14 C 0.07 1.67 5.45 -17.82 -0.10 1.58 16 15 N -0.89 -23.92 13.29 55.43 0.74 -23.18 16 16 Si 0.89 19.61 29.54 -169.99 -5.02 14.59 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 C 0.14 2.06 5.29 -4.04 -0.02 2.04 16 21 C -0.05 -0.69 6.02 -29.52 -0.18 -0.87 16 22 C 0.22 3.13 15.44 -20.73 -0.32 2.81 16 23 N -0.45 -7.36 18.54 42.18 0.78 -6.58 16 24 H 0.07 1.06 7.41 -51.93 -0.38 0.68 16 25 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 26 H 0.08 1.29 7.06 -51.93 -0.37 0.93 16 27 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 28 H 0.08 0.96 6.98 -51.93 -0.36 0.60 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.10 1.18 8.03 -51.93 -0.42 0.77 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 1.33 6.85 -51.93 -0.36 0.97 16 35 H 0.04 0.93 8.11 -51.93 -0.42 0.51 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.07 0.89 7.53 -51.93 -0.39 0.50 16 38 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 39 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.11 1.36 7.99 -51.93 -0.41 0.94 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -29.94 356.15 -8.73 -38.67 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.00 Total: 1.04 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.44 Total: -5.24 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.80 Total: -63.27 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.79 Total: -39.92 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Atomic # 16 Polarization: 49.41 SS G_CDS: -0.65 Total: 48.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.94 -8.73 -38.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331752959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.553 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds