Wall clock time and date at job start Tue Mar 31 2020 04:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 120.00145 * 2 1 4 4 C 1.53007 * 109.47268 * 275.39303 * 3 2 1 5 5 C 1.53007 * 117.49585 * 243.99609 * 4 3 2 6 6 C 1.53000 * 117.49793 * 175.37338 * 4 3 2 7 7 S 1.65600 * 119.99868 * 180.02562 * 2 1 3 8 8 O 1.42102 * 106.40219 * 161.06327 * 7 2 1 9 9 O 1.42092 * 106.40357 * 28.13948 * 7 2 1 10 10 N 1.65600 * 107.21705 * 274.59993 * 7 2 1 11 11 C 1.46501 * 119.99743 * 95.03847 * 10 7 2 12 12 C 1.50701 * 109.47157 * 263.91671 * 11 10 7 13 13 H 1.08002 * 120.00448 * 4.76410 * 12 11 10 14 14 C 1.37880 * 119.99907 * 184.75674 * 12 11 10 15 15 N 1.31509 * 120.00270 * 354.77454 * 14 12 11 16 16 Si 1.86804 * 119.99656 * 174.77401 * 14 12 11 17 17 H 1.48495 * 109.47285 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46927 * 120.00463 * 16 14 12 19 19 H 1.48497 * 109.46856 * 239.99861 * 16 14 12 20 20 C 1.46500 * 120.00449 * 274.76798 * 10 7 2 21 21 C 1.53001 * 109.46841 * 265.27486 * 20 10 7 22 22 C 1.47205 * 109.46896 * 179.97438 * 21 20 10 23 23 N 6.63136 * 141.31979 * 111.66450 * 2 1 3 24 24 H 1.08996 * 109.47389 * 270.00207 * 1 2 3 25 25 H 1.09001 * 109.46816 * 29.99956 * 1 2 3 26 26 H 1.08998 * 109.47216 * 149.99505 * 1 2 3 27 27 H 1.08999 * 109.47075 * 35.39288 * 3 2 1 28 28 H 1.09002 * 109.46864 * 155.39643 * 3 2 1 29 29 H 1.08998 * 115.54795 * 29.69926 * 4 3 2 30 30 H 1.08994 * 117.49970 * 359.97438 * 5 4 3 31 31 H 1.09001 * 117.49484 * 145.02194 * 5 4 3 32 32 H 1.08999 * 117.49504 * 214.97705 * 6 4 3 33 33 H 1.09004 * 117.50053 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47568 * 23.91926 * 11 10 7 35 35 H 1.09006 * 109.47359 * 143.92060 * 11 10 7 36 36 H 0.96997 * 120.00475 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.46951 * 25.27400 * 20 10 7 38 38 H 1.08993 * 109.47632 * 145.27160 * 20 10 7 39 39 H 1.09001 * 109.47340 * 299.99161 * 21 20 10 40 40 H 1.08998 * 109.47255 * 59.99934 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3351 1.7782 -1.4362 5 6 3.7470 1.8827 -2.0164 6 6 2.9787 3.1512 -1.6400 7 16 2.2929 -1.4342 -0.0006 8 8 3.6102 -1.1368 -0.4429 9 8 1.4526 -2.3823 -0.6439 10 7 2.4281 -1.9228 1.5758 11 6 1.4524 -2.8596 2.1386 12 6 0.3818 -2.0910 2.8694 13 1 0.3807 -1.0113 2.8460 14 6 -0.5966 -2.7664 3.5679 15 7 -0.6568 -4.0789 3.5126 16 14 -1.8365 -1.8168 4.5927 17 1 -1.5549 -0.3625 4.4883 18 1 -3.2071 -2.0924 4.0920 19 1 -1.7336 -2.2408 6.0122 20 6 3.5268 -1.4230 2.4061 21 6 4.6858 -2.4213 2.3732 22 6 5.7900 -1.9187 3.2070 23 7 6.6417 -1.5300 3.8517 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 1.6537 2.0022 0.5952 28 1 3.1883 1.1161 0.4279 29 1 1.5314 1.4932 -2.1151 30 1 4.5778 1.5889 -1.3749 31 1 3.8724 1.6664 -3.0773 32 1 2.5986 3.7694 -2.4533 33 1 3.3044 3.6914 -0.7510 34 1 0.9990 -3.4388 1.3342 35 1 1.9543 -3.5333 2.8332 36 1 -1.3448 -4.5540 4.0042 37 1 3.8648 -0.4610 2.0207 38 1 3.1806 -1.3018 3.4325 39 1 4.3478 -3.3832 2.7586 40 1 5.0320 -2.5424 1.3468 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331752959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:18 Heat of formation + Delta-G solvation = -42.545824 kcal Electronic energy + Delta-G solvation = -23624.841652 eV Core-core repulsion = 20180.829712 eV Total energy + Delta-G solvation = -3444.011940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -38.87888 -38.43857 -38.13986 -37.04763 -36.77019 -35.99760 -34.63004 -32.06418 -28.97382 -28.65007 -25.81615 -25.34022 -23.68516 -23.10335 -21.57531 -19.86781 -18.89792 -18.66723 -18.24593 -18.04888 -17.35373 -16.63840 -16.19519 -15.89428 -15.71547 -15.34265 -15.00996 -14.89861 -14.37102 -14.24384 -13.95827 -13.87292 -13.66323 -13.44292 -13.34824 -13.13720 -12.90372 -12.86356 -12.76281 -12.60756 -12.54850 -12.44073 -12.28270 -12.25197 -12.04611 -11.69989 -11.53875 -11.24544 -10.76443 -10.49955 -9.94386 -9.77310 -8.09880 -6.20474 -0.25250 1.46839 1.50764 1.59466 1.72341 1.81356 2.01492 2.48362 2.58274 2.99481 3.10830 3.23728 3.48312 3.84198 3.89734 4.00213 4.09541 4.16982 4.29072 4.38798 4.52304 4.57828 4.69837 4.72979 4.87626 4.92169 5.01172 5.09876 5.11628 5.13029 5.17256 5.35193 5.37518 5.41401 5.56377 5.70733 5.84720 6.00163 6.20049 6.58007 6.91853 7.48977 8.98350 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.011254 B = 0.006549 C = 0.004950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.441327 B = 4274.716148 C = 5655.349990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.002 6.002 3 C 0.151 3.849 4 C -0.190 4.190 5 C -0.187 4.187 6 C -0.155 4.155 7 S 2.792 3.208 8 O -0.989 6.989 9 O -1.014 7.014 10 N -0.991 5.991 11 C 0.255 3.745 12 C -0.535 4.535 13 H 0.074 0.926 14 C 0.014 3.986 15 N -0.927 5.927 16 Si 0.950 3.050 17 H -0.258 1.258 18 H -0.287 1.287 19 H -0.286 1.286 20 C 0.134 3.866 21 C -0.048 4.048 22 C 0.247 3.753 23 N -0.488 5.488 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.021 0.979 35 H 0.034 0.966 36 H 0.263 0.737 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.127 0.873 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.596 11.938 -7.132 14.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.842 5.842 3 C 0.026 3.974 4 C -0.210 4.210 5 C -0.224 4.224 6 C -0.193 4.193 7 S 2.801 3.199 8 O -0.972 6.972 9 O -0.998 6.998 10 N -0.830 5.830 11 C 0.132 3.868 12 C -0.574 4.574 13 H 0.092 0.908 14 C -0.185 4.185 15 N -0.567 5.567 16 Si 0.776 3.224 17 H -0.182 1.182 18 H -0.213 1.213 19 H -0.212 1.212 20 C 0.007 3.993 21 C -0.089 4.089 22 C -0.071 4.071 23 N -0.166 5.166 24 H 0.076 0.924 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.039 0.961 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.144 0.856 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.078 11.908 -6.861 15.027 hybrid contribution -1.382 -0.227 0.663 1.549 sum 4.696 11.682 -6.198 14.033 Atomic orbital electron populations 1.21580 0.77852 1.03583 1.02639 1.57612 1.15796 1.21386 1.89372 1.21016 0.96569 0.84707 0.95083 1.22833 0.97437 1.02342 0.98343 1.23088 0.94808 1.02787 1.01747 1.23028 1.02526 0.89720 1.04011 1.01490 0.72552 0.72669 0.73148 1.93542 1.37830 1.85245 1.80615 1.93526 1.69818 1.61892 1.74586 1.57685 1.36103 1.58700 1.30542 1.18850 0.86135 0.87852 0.93994 1.21884 1.10442 0.94154 1.30960 0.90776 1.25683 0.99493 0.95454 0.97870 1.70055 1.35430 1.08177 1.43041 0.85628 0.78779 0.79636 0.78334 1.18159 1.21301 1.21250 1.21057 0.84357 0.95627 0.98304 1.19926 0.88282 1.01653 0.99079 1.29179 0.93415 0.92034 0.92425 1.81238 1.12767 1.10693 1.11905 0.92424 0.88501 0.92225 0.88140 0.89907 0.87930 0.88859 0.88970 0.87574 0.87465 0.96057 0.94755 0.92793 0.88984 0.88992 0.85561 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.50 10.70 127.77 1.37 3.87 16 2 N -1.00 -28.76 3.24 -539.13 -1.75 -30.51 16 3 C 0.15 3.37 5.63 86.38 0.49 3.85 16 4 C -0.19 -3.95 6.01 -10.79 -0.06 -4.01 16 5 C -0.19 -3.84 10.18 30.60 0.31 -3.52 16 6 C -0.16 -2.45 10.25 30.60 0.31 -2.14 16 7 S 2.79 97.48 6.01 -56.49 -0.34 97.14 16 8 O -0.99 -33.29 15.94 -128.00 -2.04 -35.33 16 9 O -1.01 -44.22 15.29 -128.00 -1.96 -46.17 16 10 N -0.99 -34.48 2.83 -519.84 -1.47 -35.94 16 11 C 0.26 11.35 5.43 85.63 0.47 11.82 16 12 C -0.54 -25.34 9.36 25.60 0.24 -25.10 16 13 H 0.07 3.30 7.10 -2.91 -0.02 3.28 16 14 C 0.01 0.73 5.45 84.66 0.46 1.19 16 15 N -0.93 -50.75 13.29 21.45 0.29 -50.46 16 16 Si 0.95 39.81 29.54 68.60 2.03 41.84 16 17 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 18 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 20 C 0.13 3.67 5.29 86.38 0.46 4.13 16 21 C -0.05 -1.14 6.02 28.79 0.17 -0.96 16 22 C 0.25 6.55 15.44 89.43 1.38 7.93 16 23 N -0.49 -15.30 18.54 20.02 0.37 -14.92 16 24 H 0.06 1.73 7.41 -2.39 -0.02 1.71 16 25 H 0.10 2.03 8.07 -2.39 -0.02 2.01 16 26 H 0.06 1.93 7.06 -2.39 -0.02 1.91 16 27 H 0.10 1.82 8.11 -2.39 -0.02 1.80 16 28 H 0.08 1.78 6.98 -2.39 -0.02 1.77 16 29 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.09 2.03 8.03 -2.39 -0.02 2.02 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 33 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.02 1.10 6.85 -2.39 -0.02 1.08 16 35 H 0.03 1.57 8.11 -2.38 -0.02 1.55 16 36 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 37 H 0.09 2.12 7.53 -2.39 -0.02 2.10 16 38 H 0.09 2.56 8.11 -2.39 -0.02 2.54 16 39 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 40 H 0.12 2.76 7.99 -2.39 -0.02 2.74 16 Total: -1.00 -64.08 356.15 1.75 -62.32 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: 1.03 Total: 14.99 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 5.59 Total: -2.94 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -2.56 Total: -131.84 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -4.00 Total: -81.50 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 16 Polarization: 97.48 SS G_CDS: -0.34 Total: 97.14 kcal Total: -64.08 1.75 -62.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331752959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.779 kcal (2) G-P(sol) polarization free energy of solvation -64.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds