Wall clock time and date at job start Tue Mar 31 2020 03:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.57935 * 2 1 4 4 C 1.53240 * 109.58337 * 239.58991 * 2 1 3 5 5 N 1.46376 * 109.48265 * 182.54820 * 4 2 1 6 6 C 1.34778 * 119.64755 * 245.10305 * 5 4 2 7 7 O 1.21586 * 119.99943 * 174.90178 * 6 5 4 8 8 N 1.34781 * 119.99729 * 354.90996 * 6 5 4 9 9 C 1.46494 * 119.99567 * 185.07746 * 8 6 5 10 10 C 1.50700 * 109.46859 * 179.97438 * 9 8 6 11 11 O 1.21291 * 119.99915 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00053 * 180.02562 * 10 9 8 13 13 C 1.37099 * 119.99839 * 180.02562 * 12 10 9 14 14 H 1.07995 * 120.00440 * 0.02562 * 13 12 10 15 15 C 1.38952 * 120.00103 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99829 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00253 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47366 * 60.00131 * 17 15 13 19 19 H 1.48505 * 109.46983 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47250 * 300.00144 * 17 15 13 21 21 C 1.46382 * 120.70822 * 65.09056 * 5 4 2 22 22 C 1.53238 * 109.48573 * 294.90662 * 21 5 4 23 23 H 1.08998 * 109.57956 * 297.72577 * 22 21 5 24 24 C 1.53001 * 109.58410 * 177.45332 * 22 21 5 25 25 S 1.81741 * 108.79932 * 57.65569 * 22 21 5 26 26 H 1.08995 * 109.47159 * 299.72808 * 1 2 3 27 27 H 1.09000 * 109.47348 * 59.73055 * 1 2 3 28 28 H 1.08999 * 109.46785 * 179.72528 * 1 2 3 29 29 H 1.09000 * 109.46352 * 302.54792 * 4 2 1 30 30 H 1.08998 * 109.47388 * 62.54520 * 4 2 1 31 31 H 0.96998 * 120.00066 * 5.07306 * 8 6 5 32 32 H 1.09000 * 109.47504 * 299.99698 * 9 8 6 33 33 H 1.09001 * 109.47452 * 59.99906 * 9 8 6 34 34 H 0.96993 * 120.00131 * 0.02562 * 12 10 9 35 35 H 0.96997 * 120.00244 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.46691 * 174.90068 * 21 5 4 37 37 H 1.09005 * 109.46533 * 54.90933 * 21 5 4 38 38 H 1.08994 * 109.46973 * 59.99698 * 24 22 21 39 39 H 1.08997 * 109.47149 * 180.02562 * 24 22 21 40 40 H 1.09000 * 109.46530 * 299.99639 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0437 -0.7308 -1.2451 5 7 3.5061 -0.7827 -1.2123 6 6 4.2178 -0.1261 -2.1498 7 8 5.4308 -0.0874 -2.0759 8 7 3.5847 0.4876 -3.1692 9 6 4.3606 1.1056 -4.2473 10 6 3.4216 1.7180 -5.2545 11 8 2.2224 1.6458 -5.0878 12 7 3.9145 2.3460 -6.3404 13 6 3.0602 2.9035 -7.2564 14 1 1.9925 2.8400 -7.1076 15 6 3.5683 3.5514 -8.3757 16 7 4.8676 3.6292 -8.5566 17 14 2.4045 4.3105 -9.6241 18 1 1.5707 5.3439 -8.9592 19 1 3.1909 4.9364 -10.7173 20 1 1.5266 3.2542 -10.1887 21 6 4.2041 -1.5397 -0.1718 22 6 3.9338 -0.9000 1.1942 23 1 4.3285 0.1159 1.2063 24 6 4.6101 -1.7260 2.2902 25 16 2.1392 -0.8632 1.4788 26 1 -0.3633 0.5096 0.8924 27 1 -0.3634 0.5180 -0.8875 28 1 -0.3633 -1.0277 -0.0049 29 1 1.6445 -1.7449 -1.2616 30 1 1.7191 -0.1981 -2.1389 31 1 2.6155 0.5201 -3.1890 32 1 5.0052 1.8807 -3.8329 33 1 4.9723 0.3470 -4.7357 34 1 4.8734 2.4034 -6.4739 35 1 5.2223 4.0812 -9.3381 36 1 5.2755 -1.5296 -0.3721 37 1 3.8448 -2.5688 -0.1685 38 1 5.6847 -1.7570 2.1108 39 1 4.4163 -1.2697 3.2609 40 1 4.2104 -2.7401 2.2795 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334744700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:37 Heat of formation + Delta-G solvation = -84.621667 kcal Electronic energy + Delta-G solvation = -22478.445479 eV Core-core repulsion = 19032.608994 eV Total energy + Delta-G solvation = -3445.836486 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.65818 -40.15653 -37.91992 -36.36942 -35.76425 -34.93763 -33.44096 -33.22607 -29.56920 -27.98942 -27.11005 -25.98314 -23.54567 -22.39114 -21.45383 -21.12740 -20.20439 -19.59030 -17.87430 -17.56834 -17.38016 -16.93328 -16.48910 -16.39013 -16.06192 -15.97917 -15.54925 -15.32115 -15.05162 -14.56886 -14.22877 -13.90751 -13.64881 -13.54579 -13.44952 -13.34584 -13.08897 -12.90568 -12.79827 -12.70490 -12.47447 -12.23991 -12.14110 -11.69795 -11.56764 -11.37246 -10.82273 -10.57388 -10.42384 -10.11033 -9.84487 -8.71756 -8.51503 -6.01872 0.62379 1.37663 1.38200 1.43709 1.44484 1.54413 1.85893 1.94655 2.26810 2.66096 3.10426 3.15752 3.47335 3.70881 3.85822 3.90768 3.99498 4.10332 4.19165 4.32845 4.37817 4.42025 4.49724 4.58143 4.70442 4.77613 4.80942 4.90476 4.93015 5.16357 5.21332 5.22330 5.34898 5.37837 5.66468 5.90973 6.46611 6.73999 7.02448 7.32007 7.43921 7.92722 8.65176 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.028752 B = 0.002991 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.609459 B = 9358.966187 C =10167.416593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 H 0.077 0.923 4 C 0.111 3.889 5 N -0.629 5.629 6 C 0.706 3.294 7 O -0.622 6.622 8 N -0.724 5.724 9 C 0.139 3.861 10 C 0.434 3.566 11 O -0.623 6.623 12 N -0.558 5.558 13 C -0.338 4.338 14 H 0.088 0.912 15 C -0.010 4.010 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.270 1.270 19 H -0.272 1.272 20 H -0.269 1.269 21 C 0.131 3.869 22 C -0.066 4.066 23 H 0.074 0.926 24 C -0.125 4.125 25 S -0.258 6.258 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.105 0.895 30 H 0.090 0.910 31 H 0.409 0.591 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 -10.293 18.074 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.198 4.198 3 H 0.095 0.905 4 C -0.014 4.014 5 N -0.365 5.365 6 C 0.407 3.593 7 O -0.503 6.503 8 N -0.384 5.384 9 C 0.011 3.989 10 C 0.221 3.779 11 O -0.511 6.511 12 N -0.193 5.193 13 C -0.467 4.467 14 H 0.106 0.894 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.195 1.195 19 H -0.197 1.197 20 H -0.194 1.194 21 C 0.007 3.993 22 C -0.196 4.196 23 H 0.092 0.908 24 C -0.183 4.183 25 S -0.031 6.031 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.108 0.892 31 H 0.250 0.750 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.037 -10.627 18.916 22.069 hybrid contribution 0.467 1.269 -1.829 2.274 sum -3.570 -9.358 17.087 19.806 Atomic orbital electron populations 1.21575 0.89291 1.04121 1.03693 1.23589 1.01283 1.00681 0.94245 0.90497 1.21998 0.78692 1.03038 0.97657 1.47154 1.06682 1.53233 1.29426 1.15895 0.84907 0.78521 0.79993 1.90873 1.13105 1.67573 1.78731 1.44955 1.11103 1.59499 1.22849 1.20623 0.92653 0.98462 0.87168 1.20347 0.89176 0.84013 0.84411 1.90458 1.17068 1.65327 1.78279 1.41820 1.09883 1.48130 1.19459 1.19711 0.91525 1.33537 1.01927 0.89440 1.26130 0.98057 0.97211 0.99675 1.69673 1.12486 1.43082 1.30366 0.84933 0.77595 0.78420 0.77088 1.19463 1.19700 1.19409 1.21755 0.99025 0.94863 0.83679 1.23606 0.93591 1.03348 0.99081 0.90794 1.21547 1.00863 0.99850 0.96071 1.86838 1.06701 1.77370 1.32211 0.91079 0.90001 0.90336 0.87670 0.89199 0.74984 0.89134 0.88833 0.76705 0.91045 0.88677 0.88204 0.89745 0.91167 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.22 71.98 0.66 -1.23 16 2 C -0.07 -1.28 3.32 30.68 0.10 -1.18 16 3 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 4 C 0.11 2.21 5.52 86.48 0.48 2.69 16 5 N -0.63 -15.44 2.79 -839.50 -2.34 -17.78 16 6 C 0.71 22.73 8.25 179.05 1.48 24.21 16 7 O -0.62 -23.72 15.67 -3.99 -0.06 -23.78 16 8 N -0.72 -24.12 5.43 -482.30 -2.62 -26.74 16 9 C 0.14 5.11 6.16 85.63 0.53 5.63 16 10 C 0.43 19.74 7.85 87.66 0.69 20.43 16 11 O -0.62 -31.45 15.24 -3.06 -0.05 -31.50 16 12 N -0.56 -27.68 5.29 -306.98 -1.62 -29.31 16 13 C -0.34 -18.37 9.68 84.04 0.81 -17.56 16 14 H 0.09 4.98 7.16 -2.91 -0.02 4.95 16 15 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 16 N -0.92 -48.35 13.05 21.66 0.28 -48.07 16 17 Si 1.00 41.25 29.55 68.60 2.03 43.28 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 C 0.13 2.67 5.50 86.48 0.48 3.15 16 22 C -0.07 -1.22 3.32 30.67 0.10 -1.12 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 24 C -0.12 -1.63 9.22 71.98 0.66 -0.97 16 25 S -0.26 -4.89 21.03 -56.49 -1.19 -6.08 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.09 1.93 5.41 -2.39 -0.01 1.92 16 31 H 0.41 13.26 4.79 -92.71 -0.44 12.82 16 32 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.40 19.09 7.90 -92.71 -0.73 18.35 16 35 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 36 H 0.10 2.21 6.91 -2.39 -0.02 2.19 16 37 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -65.02 341.10 0.78 -64.25 By element: Atomic # 1 Polarization: 41.81 SS G_CDS: -0.11 Total: 41.70 kcal Atomic # 6 Polarization: 27.56 SS G_CDS: 6.46 Total: 34.02 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -6.30 Total: -121.89 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.11 Total: -55.28 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 16 Polarization: -4.89 SS G_CDS: -1.19 Total: -6.08 kcal Total: -65.02 0.78 -64.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334744700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.376 kcal (2) G-P(sol) polarization free energy of solvation -65.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds