Wall clock time and date at job start Tue Mar 31 2020 03:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.69592 * 2 1 4 4 C 1.53243 * 109.58266 * 239.65600 * 2 1 3 5 5 N 1.46372 * 109.49130 * 182.55087 * 4 2 1 6 6 C 1.34777 * 119.64979 * 245.09151 * 5 4 2 7 7 O 1.21586 * 120.00463 * 185.29059 * 6 5 4 8 8 N 1.34783 * 119.99509 * 5.29273 * 6 5 4 9 9 C 1.46501 * 119.99487 * 175.30223 * 8 6 5 10 10 C 1.50698 * 109.46794 * 179.72084 * 9 8 6 11 11 O 1.21285 * 120.00323 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99981 * 179.97438 * 10 9 8 13 13 C 1.37091 * 120.00413 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00068 * 0.02562 * 13 12 10 15 15 C 1.38954 * 120.00475 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99627 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00077 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47321 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47174 * 120.00009 * 17 15 13 20 20 H 1.48501 * 109.46796 * 240.00271 * 17 15 13 21 21 C 1.46378 * 120.70634 * 65.35992 * 5 4 2 22 22 C 1.53755 * 109.20796 * 294.64055 * 21 5 4 23 23 H 1.09006 * 109.50896 * 177.55160 * 22 21 5 24 24 C 1.52998 * 109.70049 * 297.99345 * 22 21 5 25 25 S 1.81741 * 108.75507 * 57.82903 * 22 21 5 26 26 H 1.09000 * 109.47307 * 180.34351 * 1 2 3 27 27 H 1.09001 * 109.46947 * 300.34422 * 1 2 3 28 28 H 1.08997 * 109.47004 * 60.34013 * 1 2 3 29 29 H 1.09002 * 109.46535 * 62.54327 * 4 2 1 30 30 H 1.08997 * 109.46434 * 302.55530 * 4 2 1 31 31 H 0.96998 * 120.00204 * 355.02110 * 8 6 5 32 32 H 1.09004 * 109.47316 * 299.71961 * 9 8 6 33 33 H 1.09002 * 109.47194 * 59.72195 * 9 8 6 34 34 H 0.97006 * 120.00102 * 0.02562 * 12 10 9 35 35 H 0.97003 * 119.99472 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.46788 * 54.64359 * 21 5 4 37 37 H 1.09003 * 109.46678 * 174.63329 * 21 5 4 38 38 H 1.08994 * 109.47301 * 179.32974 * 24 22 21 39 39 H 1.09004 * 109.46633 * 299.32939 * 24 22 21 40 40 H 1.08996 * 109.47234 * 59.32434 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2460 5 7 3.5061 -0.7814 -1.2134 6 6 4.2177 -0.1241 -2.1504 7 8 5.4274 -0.2404 -2.1878 8 7 3.5883 0.6623 -3.0459 9 6 4.3679 1.4569 -3.9984 10 6 3.4324 2.2364 -4.8862 11 8 2.2327 2.1383 -4.7378 12 7 3.9290 3.0434 -5.8447 13 6 3.0782 3.7522 -6.6528 14 1 2.0098 3.6642 -6.5211 15 6 3.5901 4.5838 -7.6413 16 7 4.8900 4.6905 -7.8018 17 14 2.4306 5.5501 -8.7419 18 1 1.0258 5.2562 -8.3601 19 1 2.6936 7.0029 -8.5835 20 1 2.6506 5.1585 -10.1573 21 6 4.2039 -1.5446 -0.1774 22 6 3.9338 -0.9016 1.1929 23 1 4.4156 -1.4912 1.9730 24 6 4.4849 0.5255 1.2106 25 16 2.1392 -0.8651 1.4777 26 1 -0.3634 -1.0276 0.0062 27 1 -0.3633 0.5192 0.8869 28 1 -0.3633 0.5085 -0.8930 29 1 1.7189 -0.1955 -2.1391 30 1 1.6444 -1.7434 -1.2637 31 1 2.6191 0.6990 -3.0625 32 1 5.0120 2.1475 -3.4539 33 1 4.9804 0.7937 -4.6092 34 1 4.8886 3.1222 -5.9632 35 1 5.2474 5.2713 -8.4917 36 1 3.8412 -2.5725 -0.1770 37 1 5.2749 -1.5373 -0.3802 38 1 4.2810 0.9818 2.1792 39 1 5.5612 0.5015 1.0397 40 1 4.0054 1.1100 0.4255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334744708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:45 Heat of formation + Delta-G solvation = -62.158993 kcal Electronic energy + Delta-G solvation = -22814.527666 eV Core-core repulsion = 19369.665235 eV Total energy + Delta-G solvation = -3444.862431 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45672 -38.38569 -36.86643 -34.87165 -34.16313 -33.54392 -32.30370 -31.39918 -28.14113 -27.09107 -26.01533 -24.39518 -22.32754 -21.86355 -19.81661 -19.75031 -18.64455 -17.95762 -16.77607 -16.27261 -15.73541 -15.63266 -15.33163 -14.92491 -14.62565 -14.51173 -14.23891 -13.99842 -13.67952 -13.51726 -13.14456 -13.04634 -12.55238 -12.33566 -12.20059 -11.98774 -11.88471 -11.72185 -11.66085 -11.52003 -11.16966 -10.86324 -10.43564 -10.35573 -10.05383 -9.94797 -9.68108 -9.10393 -8.68239 -8.66927 -8.13577 -7.86901 -6.54684 -3.96762 1.47005 2.24478 2.57419 3.07706 3.20455 3.21713 3.26840 3.70631 3.83480 4.10006 4.33392 4.53091 4.66850 4.71928 4.77236 4.86888 4.97657 5.14058 5.16257 5.34514 5.38307 5.46505 5.52184 5.58393 5.62801 5.67457 5.83968 5.87177 5.94846 6.00120 6.03305 6.33115 6.65517 6.84755 7.43137 7.88977 8.01977 8.41168 8.64170 9.01335 9.35779 9.83233 10.62195 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.025889 B = 0.003207 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.263808 B = 8728.772658 C = 9394.477208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 H 0.094 0.906 4 C 0.112 3.888 5 N -0.633 5.633 6 C 0.708 3.292 7 O -0.590 6.590 8 N -0.724 5.724 9 C 0.126 3.874 10 C 0.428 3.572 11 O -0.599 6.599 12 N -0.548 5.548 13 C -0.305 4.305 14 H 0.106 0.894 15 C 0.026 3.974 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.133 3.867 22 C -0.070 4.070 23 H 0.118 0.882 24 C -0.141 4.141 25 S -0.257 6.257 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.406 0.594 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.396 0.604 35 H 0.274 0.726 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.162 -10.442 15.867 19.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.199 4.199 3 H 0.112 0.888 4 C -0.013 4.013 5 N -0.370 5.370 6 C 0.409 3.591 7 O -0.469 6.469 8 N -0.384 5.384 9 C -0.002 4.002 10 C 0.214 3.786 11 O -0.486 6.486 12 N -0.182 5.182 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.177 4.177 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.007 3.993 22 C -0.200 4.200 23 H 0.136 0.864 24 C -0.200 4.200 25 S -0.030 6.030 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.247 0.753 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.230 0.770 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.543 -10.841 16.639 20.173 hybrid contribution 0.327 1.133 -1.625 2.008 sum -3.216 -9.707 15.014 18.166 Atomic orbital electron populations 1.21583 0.90924 1.03279 1.03391 1.23600 0.99945 1.01828 0.94563 0.88784 1.21843 0.80100 1.01822 0.97564 1.47011 1.05723 1.54060 1.30193 1.15789 0.85133 0.78731 0.79473 1.90894 1.11984 1.68434 1.75538 1.45029 1.11112 1.46691 1.35544 1.20816 0.93525 0.94574 0.91265 1.19729 0.88960 0.85100 0.84849 1.90481 1.15556 1.69308 1.73245 1.41792 1.09971 1.37843 1.28636 1.19776 0.91921 1.20863 1.10886 0.87614 1.25334 0.96470 0.97820 0.98084 1.69625 1.11147 1.38647 1.33953 0.85757 0.80121 0.78931 0.79278 1.19123 1.20590 1.20591 1.21640 0.99810 0.93825 0.83984 1.23755 0.93857 1.01195 1.01207 0.86429 1.21950 1.01565 0.93991 1.02504 1.86795 1.06476 1.77345 1.32343 0.91401 0.91373 0.90370 0.88696 0.89643 0.75348 0.90065 0.89877 0.77011 0.91606 0.90279 0.87453 0.91668 0.91410 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.10 9.22 37.16 0.34 -0.75 16 2 C -0.07 -0.69 2.92 -26.60 -0.08 -0.76 16 3 H 0.09 1.06 7.35 -51.93 -0.38 0.67 16 4 C 0.11 1.17 5.48 -3.99 -0.02 1.15 16 5 N -0.63 -7.83 2.12 -179.00 -0.38 -8.21 16 6 C 0.71 11.30 8.13 -86.91 -0.71 10.59 16 7 O -0.59 -11.09 15.65 5.29 0.08 -11.01 16 8 N -0.72 -12.04 5.43 -66.41 -0.36 -12.40 16 9 C 0.13 2.32 6.16 -5.19 -0.03 2.28 16 10 C 0.43 9.64 7.85 -10.99 -0.09 9.55 16 11 O -0.60 -14.94 15.24 5.55 0.08 -14.86 16 12 N -0.55 -13.38 5.29 -10.96 -0.06 -13.44 16 13 C -0.31 -8.17 9.68 -14.93 -0.14 -8.32 16 14 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 15 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 16 N -0.89 -23.62 13.05 55.50 0.72 -22.90 16 17 Si 0.93 20.28 29.55 -169.99 -5.02 15.25 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.13 1.40 5.71 -3.72 -0.02 1.38 16 22 C -0.07 -0.67 3.47 -26.34 -0.09 -0.76 16 23 H 0.12 0.92 8.14 -51.92 -0.42 0.50 16 24 C -0.14 -1.48 8.99 37.16 0.33 -1.15 16 25 S -0.26 -2.60 21.09 -107.50 -2.27 -4.87 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.05 5.48 -51.93 -0.28 0.76 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.41 6.58 4.82 -40.82 -0.20 6.39 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.40 9.33 7.90 -40.82 -0.32 9.01 16 35 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.11 1.26 6.87 -51.93 -0.36 0.90 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -30.49 337.58 -8.32 -38.82 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -5.61 Total: 14.72 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -0.60 Total: 13.79 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.07 Total: -56.94 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: 0.17 Total: -25.87 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.27 Total: -4.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.49 -8.32 -38.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334744708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.342 kcal (2) G-P(sol) polarization free energy of solvation -30.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds