Wall clock time and date at job start Tue Mar 31 2020 03:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.69592 * 2 1 4 4 C 1.53243 * 109.58266 * 239.65600 * 2 1 3 5 5 N 1.46372 * 109.49130 * 182.55087 * 4 2 1 6 6 C 1.34777 * 119.64979 * 245.09151 * 5 4 2 7 7 O 1.21586 * 120.00463 * 185.29059 * 6 5 4 8 8 N 1.34783 * 119.99509 * 5.29273 * 6 5 4 9 9 C 1.46501 * 119.99487 * 175.30223 * 8 6 5 10 10 C 1.50698 * 109.46794 * 179.72084 * 9 8 6 11 11 O 1.21285 * 120.00323 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99981 * 179.97438 * 10 9 8 13 13 C 1.37091 * 120.00413 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00068 * 0.02562 * 13 12 10 15 15 C 1.38954 * 120.00475 * 180.02562 * 13 12 10 16 16 N 1.31414 * 119.99627 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00077 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47321 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47174 * 120.00009 * 17 15 13 20 20 H 1.48501 * 109.46796 * 240.00271 * 17 15 13 21 21 C 1.46378 * 120.70634 * 65.35992 * 5 4 2 22 22 C 1.53755 * 109.20796 * 294.64055 * 21 5 4 23 23 H 1.09006 * 109.50896 * 177.55160 * 22 21 5 24 24 C 1.52998 * 109.70049 * 297.99345 * 22 21 5 25 25 S 1.81741 * 108.75507 * 57.82903 * 22 21 5 26 26 H 1.09000 * 109.47307 * 180.34351 * 1 2 3 27 27 H 1.09001 * 109.46947 * 300.34422 * 1 2 3 28 28 H 1.08997 * 109.47004 * 60.34013 * 1 2 3 29 29 H 1.09002 * 109.46535 * 62.54327 * 4 2 1 30 30 H 1.08997 * 109.46434 * 302.55530 * 4 2 1 31 31 H 0.96998 * 120.00204 * 355.02110 * 8 6 5 32 32 H 1.09004 * 109.47316 * 299.71961 * 9 8 6 33 33 H 1.09002 * 109.47194 * 59.72195 * 9 8 6 34 34 H 0.97006 * 120.00102 * 0.02562 * 12 10 9 35 35 H 0.97003 * 119.99472 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.46788 * 54.64359 * 21 5 4 37 37 H 1.09003 * 109.46678 * 174.63329 * 21 5 4 38 38 H 1.08994 * 109.47301 * 179.32974 * 24 22 21 39 39 H 1.09004 * 109.46633 * 299.32939 * 24 22 21 40 40 H 1.08996 * 109.47234 * 59.32434 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2460 5 7 3.5061 -0.7814 -1.2134 6 6 4.2177 -0.1241 -2.1504 7 8 5.4274 -0.2404 -2.1878 8 7 3.5883 0.6623 -3.0459 9 6 4.3679 1.4569 -3.9984 10 6 3.4324 2.2364 -4.8862 11 8 2.2327 2.1383 -4.7378 12 7 3.9290 3.0434 -5.8447 13 6 3.0782 3.7522 -6.6528 14 1 2.0098 3.6642 -6.5211 15 6 3.5901 4.5838 -7.6413 16 7 4.8900 4.6905 -7.8018 17 14 2.4306 5.5501 -8.7419 18 1 1.0258 5.2562 -8.3601 19 1 2.6936 7.0029 -8.5835 20 1 2.6506 5.1585 -10.1573 21 6 4.2039 -1.5446 -0.1774 22 6 3.9338 -0.9016 1.1929 23 1 4.4156 -1.4912 1.9730 24 6 4.4849 0.5255 1.2106 25 16 2.1392 -0.8651 1.4777 26 1 -0.3634 -1.0276 0.0062 27 1 -0.3633 0.5192 0.8869 28 1 -0.3633 0.5085 -0.8930 29 1 1.7189 -0.1955 -2.1391 30 1 1.6444 -1.7434 -1.2637 31 1 2.6191 0.6990 -3.0625 32 1 5.0120 2.1475 -3.4539 33 1 4.9804 0.7937 -4.6092 34 1 4.8886 3.1222 -5.9632 35 1 5.2474 5.2713 -8.4917 36 1 3.8412 -2.5725 -0.1770 37 1 5.2749 -1.5373 -0.3802 38 1 4.2810 0.9818 2.1792 39 1 5.5612 0.5015 1.0397 40 1 4.0054 1.1100 0.4255 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334744708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:44 Heat of formation + Delta-G solvation = -81.843250 kcal Electronic energy + Delta-G solvation = -22815.381239 eV Core-core repulsion = 19369.665235 eV Total energy + Delta-G solvation = -3445.716004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67438 -40.16502 -37.98511 -36.34739 -35.67804 -34.72437 -33.43454 -33.18687 -29.54281 -28.04126 -27.19659 -26.09979 -23.14652 -22.83994 -21.43714 -20.97308 -20.20764 -19.61559 -17.86339 -17.37674 -17.34590 -16.90656 -16.51652 -16.21338 -16.16176 -15.83189 -15.43960 -15.30973 -15.03428 -14.79197 -14.05614 -14.02932 -13.83838 -13.62493 -13.55569 -13.30417 -13.02366 -12.91594 -12.71474 -12.60790 -12.44772 -12.29653 -12.11216 -11.72380 -11.58500 -11.30721 -10.79581 -10.56829 -10.37233 -10.10465 -9.78823 -8.68927 -8.51676 -6.01761 0.67459 1.34817 1.40822 1.44152 1.45849 1.57809 1.87255 1.98702 2.26964 2.68234 3.11182 3.15739 3.50801 3.68868 3.86183 3.90283 4.00732 4.15794 4.21153 4.34785 4.38270 4.42554 4.50340 4.59518 4.71255 4.75607 4.79518 4.79720 4.92591 5.12690 5.21072 5.24517 5.37387 5.38667 5.69833 5.91443 6.46784 6.77199 7.02906 7.35435 7.44757 7.92994 8.65433 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.025889 B = 0.003207 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.263808 B = 8728.772658 C = 9394.477208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 H 0.077 0.923 4 C 0.111 3.889 5 N -0.625 5.625 6 C 0.707 3.293 7 O -0.620 6.620 8 N -0.726 5.726 9 C 0.140 3.860 10 C 0.434 3.566 11 O -0.623 6.623 12 N -0.558 5.558 13 C -0.336 4.336 14 H 0.087 0.913 15 C -0.010 4.010 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.269 1.269 19 H -0.272 1.272 20 H -0.272 1.272 21 C 0.130 3.870 22 C -0.065 4.065 23 H 0.141 0.859 24 C -0.137 4.137 25 S -0.256 6.256 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.408 0.592 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -11.117 16.569 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.196 4.196 3 H 0.095 0.905 4 C -0.014 4.014 5 N -0.361 5.361 6 C 0.409 3.591 7 O -0.501 6.501 8 N -0.386 5.386 9 C 0.012 3.988 10 C 0.221 3.779 11 O -0.511 6.511 12 N -0.193 5.193 13 C -0.465 4.465 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.193 1.193 19 H -0.197 1.197 20 H -0.197 1.197 21 C 0.006 3.994 22 C -0.195 4.195 23 H 0.159 0.841 24 C -0.196 4.196 25 S -0.028 6.028 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.124 0.876 31 H 0.249 0.751 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.159 -11.539 17.378 21.271 hybrid contribution 0.508 1.293 -1.758 2.241 sum -3.651 -10.247 15.620 19.034 Atomic orbital electron populations 1.21575 0.89538 1.04046 1.03605 1.23558 1.01037 1.00755 0.94292 0.90472 1.21989 0.78806 1.02970 0.97594 1.47066 1.06518 1.53066 1.29463 1.15861 0.84847 0.78688 0.79729 1.90872 1.13319 1.69503 1.76416 1.44967 1.11075 1.46886 1.35647 1.20606 0.92594 0.94576 0.91051 1.20363 0.89166 0.84160 0.84252 1.90458 1.17014 1.69858 1.73782 1.41832 1.09873 1.38459 1.29184 1.19775 0.91524 1.22659 1.12556 0.89487 1.26128 0.98019 0.98154 0.98803 1.69689 1.12336 1.39081 1.34500 0.84815 0.77921 0.77719 0.77556 1.19339 1.19684 1.19692 1.21816 0.99128 0.94673 0.83815 1.23763 0.93770 1.00705 1.01228 0.84098 1.21896 1.01121 0.94489 1.02075 1.86817 1.06638 1.77034 1.32358 0.90324 0.91172 0.90168 0.89410 0.87646 0.75078 0.89098 0.89017 0.76721 0.91080 0.88181 0.88599 0.90782 0.91745 0.94728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.22 71.98 0.66 -1.26 16 2 C -0.07 -1.23 2.92 30.68 0.09 -1.14 16 3 H 0.08 1.71 7.35 -2.39 -0.02 1.69 16 4 C 0.11 2.17 5.48 86.48 0.47 2.64 16 5 N -0.62 -14.79 2.12 -838.50 -1.78 -16.56 16 6 C 0.71 22.25 8.13 179.05 1.46 23.70 16 7 O -0.62 -23.12 15.65 -3.99 -0.06 -23.18 16 8 N -0.73 -23.94 5.43 -482.28 -2.62 -26.56 16 9 C 0.14 5.12 6.16 85.63 0.53 5.64 16 10 C 0.43 19.71 7.85 87.66 0.69 20.40 16 11 O -0.62 -31.43 15.24 -3.05 -0.05 -31.48 16 12 N -0.56 -27.67 5.29 -306.99 -1.62 -29.30 16 13 C -0.34 -18.26 9.68 84.04 0.81 -17.45 16 14 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 15 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 16 N -0.92 -48.25 13.05 21.66 0.28 -47.97 16 17 Si 1.00 41.26 29.55 68.60 2.03 43.29 16 18 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 21 C 0.13 2.53 5.71 86.66 0.49 3.02 16 22 C -0.07 -1.12 3.47 30.85 0.11 -1.01 16 23 H 0.14 1.81 8.14 -2.38 -0.02 1.79 16 24 C -0.14 -2.75 8.99 71.98 0.65 -2.10 16 25 S -0.26 -4.66 21.09 -56.49 -1.19 -5.86 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.87 5.48 -2.39 -0.01 1.85 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.41 13.19 4.82 -92.71 -0.45 12.74 16 32 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 33 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 34 H 0.40 19.06 7.90 -92.70 -0.73 18.33 16 35 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.10 2.15 6.87 -2.39 -0.02 2.13 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.03 0.85 6.43 -2.39 -0.02 0.83 16 Total: -1.00 -64.56 337.58 1.32 -63.24 By element: Atomic # 1 Polarization: 42.09 SS G_CDS: -0.11 Total: 41.98 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 6.43 Total: 32.39 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -5.73 Total: -120.39 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -0.11 Total: -54.66 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -1.19 Total: -5.86 kcal Total: -64.56 1.32 -63.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334744708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.604 kcal (2) G-P(sol) polarization free energy of solvation -64.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds