Wall clock time and date at job start Tue Mar 31 2020 03:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 108.57846 * 2 1 4 4 C 1.45824 * 108.71694 * 118.12234 * 2 1 3 5 5 S 1.82218 * 112.65210 * 186.10704 * 4 2 1 6 6 C 1.79949 * 103.24359 * 286.04637 * 5 4 2 7 7 C 1.53829 * 111.13979 * 83.99381 * 6 5 4 8 8 N 1.46392 * 114.95140 * 316.95885 * 7 6 5 9 9 C 1.34777 * 119.72691 * 137.45791 * 8 7 6 10 10 O 1.21585 * 120.00101 * 5.05900 * 9 8 7 11 11 N 1.34778 * 119.99811 * 185.06658 * 9 8 7 12 12 C 1.46496 * 119.99661 * 174.98105 * 11 9 8 13 13 C 1.50708 * 109.47125 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99764 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00194 * 180.02562 * 13 12 11 16 16 C 1.37101 * 120.00274 * 179.72077 * 15 13 12 17 17 H 1.08002 * 119.99375 * 0.27809 * 16 15 13 18 18 C 1.38942 * 120.00261 * 180.27709 * 16 15 13 19 19 N 1.31410 * 120.00063 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99927 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47145 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47175 * 120.00034 * 20 18 16 23 23 H 1.48507 * 109.46795 * 239.99662 * 20 18 16 24 24 C 1.44683 * 120.54579 * 317.73169 * 8 7 6 25 25 H 1.08994 * 109.47591 * 301.87505 * 1 2 3 26 26 H 1.09004 * 109.46960 * 61.87647 * 1 2 3 27 27 H 1.08999 * 109.47119 * 181.87657 * 1 2 3 28 28 H 1.09002 * 108.84663 * 65.28828 * 4 2 1 29 29 H 1.09001 * 108.85083 * 306.92365 * 4 2 1 30 30 H 1.08999 * 109.14630 * 323.56863 * 6 5 4 31 31 H 1.09000 * 109.15043 * 204.42149 * 6 5 4 32 32 H 1.09002 * 108.38948 * 195.53733 * 7 6 5 33 33 H 1.09008 * 108.38418 * 78.37703 * 7 6 5 34 34 H 0.96998 * 120.00158 * 354.98467 * 11 9 8 35 35 H 1.09000 * 109.47168 * 60.00078 * 12 11 9 36 36 H 1.08998 * 109.47506 * 299.99845 * 12 11 9 37 37 H 0.97005 * 119.99858 * 0.02562 * 15 13 12 38 38 H 0.97009 * 120.00042 * 179.97438 * 19 18 16 39 39 H 1.08993 * 109.47467 * 218.23385 * 24 8 7 40 40 H 1.08998 * 109.47774 * 338.24902 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8773 1.0332 0.0000 4 6 1.9979 -0.6510 1.2181 5 16 3.8068 -0.5536 1.4154 6 6 4.4178 -1.7357 0.2040 7 6 4.5167 -1.0981 -1.1924 8 7 3.3770 -0.2609 -1.5711 9 6 3.5898 0.9174 -2.1899 10 8 4.7166 1.2391 -2.5140 11 7 2.5534 1.7391 -2.4493 12 6 2.7960 3.0658 -3.0214 13 6 1.4818 3.7784 -3.2124 14 8 0.4447 3.2319 -2.9008 15 7 1.4589 5.0227 -3.7294 16 6 0.2630 5.6688 -3.9085 17 1 -0.6604 5.1822 -3.6311 18 6 0.2390 6.9495 -4.4469 19 7 1.3626 7.5417 -4.7839 20 14 -1.3904 7.8299 -4.6902 21 1 -2.4994 6.9539 -4.2342 22 1 -1.3961 9.0879 -3.9010 23 1 -1.5711 8.1478 -6.1296 24 6 2.0245 -0.6851 -1.2813 25 1 -0.3634 0.5426 0.8726 26 1 -0.3633 0.4844 -0.9064 27 1 -0.3633 -1.0271 0.0337 28 1 1.7025 -1.6999 1.1925 29 1 1.5240 -0.1747 2.0763 30 1 3.7385 -2.5870 0.1610 31 1 5.4051 -2.0825 0.5093 32 1 4.6168 -1.8959 -1.9284 33 1 5.4190 -0.4875 -1.2285 34 1 1.6470 1.4521 -2.2571 35 1 3.2959 2.9604 -3.9842 36 1 3.4270 3.6431 -2.3456 37 1 2.2883 5.4596 -3.9789 38 1 1.3458 8.4357 -5.1602 39 1 1.3719 -0.4097 -2.1096 40 1 2.0038 -1.7665 -1.1463 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335982355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:53 Heat of formation + Delta-G solvation = -86.836912 kcal Electronic energy + Delta-G solvation = -22991.531859 eV Core-core repulsion = 19545.599313 eV Total energy + Delta-G solvation = -3445.932546 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.66823 -40.14109 -38.41041 -36.34348 -35.76149 -35.19368 -33.37562 -32.16553 -29.09478 -28.29842 -27.48188 -26.44116 -24.02477 -22.02553 -21.37790 -20.85642 -20.08279 -19.25786 -18.05128 -17.51695 -17.31632 -16.90833 -16.58486 -16.38387 -16.05050 -15.73724 -15.55572 -15.13356 -15.05627 -14.62830 -14.27593 -13.91747 -13.80494 -13.55816 -13.54273 -13.52623 -12.91549 -12.85352 -12.76729 -12.43682 -12.30942 -12.10562 -12.05753 -11.78197 -11.57115 -11.32497 -10.69669 -10.54541 -10.29949 -10.08718 -9.58294 -8.69209 -8.50315 -6.00445 0.75400 1.35537 1.41839 1.46610 1.57916 1.68403 1.89584 2.07739 2.28373 2.84221 3.16845 3.17178 3.55661 3.68210 3.79528 4.04342 4.09963 4.20201 4.32119 4.40811 4.42176 4.44721 4.53844 4.60143 4.63309 4.75212 4.80626 4.82094 5.04559 5.21395 5.29714 5.36361 5.39605 5.55712 5.82418 5.92910 6.48363 6.87341 7.04048 7.41224 7.48909 7.94458 8.66912 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.003397 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.750317 B = 8239.550002 C = 8861.652503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.115 4.115 3 H 0.051 0.949 4 C -0.055 4.055 5 S -0.311 6.311 6 C -0.084 4.084 7 C 0.126 3.874 8 N -0.610 5.610 9 C 0.708 3.292 10 O -0.628 6.628 11 N -0.723 5.723 12 C 0.139 3.861 13 C 0.435 3.565 14 O -0.620 6.620 15 N -0.559 5.559 16 C -0.335 4.335 17 H 0.088 0.912 18 C -0.011 4.011 19 N -0.917 5.917 20 Si 0.997 3.003 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.271 1.271 24 C 0.107 3.893 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.409 0.591 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.398 0.602 38 H 0.279 0.721 39 H 0.076 0.924 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -19.899 9.680 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 H 0.069 0.931 4 C -0.202 4.202 5 S -0.082 6.082 6 C -0.233 4.233 7 C 0.001 3.999 8 N -0.345 5.345 9 C 0.409 3.591 10 O -0.509 6.509 11 N -0.382 5.382 12 C 0.010 3.990 13 C 0.222 3.778 14 O -0.508 6.508 15 N -0.194 5.194 16 C -0.464 4.464 17 H 0.106 0.894 18 C -0.212 4.212 19 N -0.557 5.557 20 Si 0.820 3.180 21 H -0.193 1.193 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.017 4.017 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.151 0.849 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.249 0.751 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.232 0.768 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.836 -19.216 10.305 21.988 hybrid contribution -1.146 0.390 -1.072 1.617 sum 1.689 -18.826 9.233 21.036 Atomic orbital electron populations 1.21852 0.92299 1.03456 1.02404 1.20607 0.97797 1.00262 0.95058 0.93073 1.22216 0.91380 1.05686 1.00931 1.87116 1.09120 1.60803 1.51136 1.23823 1.07177 0.98855 0.93443 1.21538 0.88254 0.94474 0.95684 1.46482 1.07903 1.19082 1.61079 1.15851 0.83800 0.80589 0.78839 1.90859 1.23218 1.76596 1.60254 1.44840 1.09757 1.15511 1.68074 1.20598 0.94442 0.83522 1.00412 1.20330 0.90779 0.83172 0.83514 1.90455 1.35438 1.67470 1.57438 1.41834 1.09681 1.13359 1.54574 1.19779 0.86868 0.98638 1.41133 0.89446 1.26133 1.02334 0.96948 0.95755 1.69694 1.27906 1.15834 1.42270 0.84810 0.77084 0.77826 0.78246 1.19299 1.19719 1.19675 1.21627 0.81812 1.01600 0.96665 0.92130 0.93173 0.89716 0.87202 0.87461 0.86875 0.84895 0.89296 0.91257 0.75130 0.89121 0.89440 0.76784 0.91111 0.90530 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.94 71.98 0.64 -1.74 16 2 C -0.12 -2.21 1.96 -12.83 -0.03 -2.24 16 3 H 0.05 1.40 7.34 -2.39 -0.02 1.38 16 4 C -0.05 -0.86 4.99 69.78 0.35 -0.51 16 5 S -0.31 -6.39 21.62 -56.49 -1.22 -7.61 16 6 C -0.08 -1.15 5.90 72.26 0.43 -0.73 16 7 C 0.13 2.43 5.97 86.68 0.52 2.95 16 8 N -0.61 -14.81 2.42 -842.06 -2.03 -16.84 16 9 C 0.71 23.84 7.95 179.05 1.42 25.26 16 10 O -0.63 -25.37 15.72 -3.98 -0.06 -25.43 16 11 N -0.72 -25.24 5.02 -482.29 -2.42 -27.66 16 12 C 0.14 5.34 6.16 85.64 0.53 5.87 16 13 C 0.44 20.31 7.85 87.66 0.69 21.00 16 14 O -0.62 -31.77 15.24 -3.07 -0.05 -31.81 16 15 N -0.56 -28.29 5.29 -306.99 -1.62 -29.92 16 16 C -0.33 -18.44 9.68 84.04 0.81 -17.63 16 17 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 18 C -0.01 -0.58 5.50 84.92 0.47 -0.12 16 19 N -0.92 -48.98 13.05 21.66 0.28 -48.69 16 20 Si 1.00 41.72 29.55 68.60 2.03 43.75 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 C 0.11 1.95 4.33 86.88 0.38 2.33 16 25 H 0.06 1.04 8.11 -2.39 -0.02 1.02 16 26 H 0.05 1.08 8.02 -2.38 -0.02 1.06 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.11 1.10 8.11 -2.39 -0.02 1.08 16 29 H 0.11 1.67 8.04 -2.39 -0.02 1.65 16 30 H 0.11 0.94 7.91 -2.47 -0.02 0.92 16 31 H 0.13 1.43 8.14 -2.47 -0.02 1.41 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.07 1.75 7.01 -2.38 -0.02 1.73 16 34 H 0.41 13.93 4.96 -92.71 -0.46 13.47 16 35 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.40 19.51 7.90 -92.70 -0.73 18.78 16 38 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 39 H 0.08 1.54 6.62 -2.39 -0.02 1.53 16 40 H 0.12 1.31 7.51 -2.39 -0.02 1.29 16 Total: -1.00 -69.39 336.17 0.98 -68.40 By element: Atomic # 1 Polarization: 41.51 SS G_CDS: -0.13 Total: 41.38 kcal Atomic # 6 Polarization: 28.23 SS G_CDS: 6.21 Total: 34.44 kcal Atomic # 7 Polarization: -117.32 SS G_CDS: -5.80 Total: -123.12 kcal Atomic # 8 Polarization: -57.14 SS G_CDS: -0.11 Total: -57.25 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: -6.39 SS G_CDS: -1.22 Total: -7.61 kcal Total: -69.39 0.98 -68.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335982355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.432 kcal (2) G-P(sol) polarization free energy of solvation -69.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds