Wall clock time and date at job start Tue Mar 31 2020 04:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46492 * 109.47314 * 2 1 4 4 C 1.46505 * 120.00368 * 274.53230 * 3 2 1 5 5 C 1.50695 * 109.46797 * 280.85711 * 4 3 2 6 6 H 1.07994 * 120.00758 * 358.38093 * 5 4 3 7 7 C 1.37879 * 119.99772 * 178.37916 * 5 4 3 8 8 N 1.31522 * 120.00036 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00258 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47232 * 59.99743 * 9 7 5 11 11 H 1.48498 * 109.47367 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46847 * 299.99848 * 9 7 5 13 13 S 1.65607 * 120.00116 * 94.53500 * 3 2 1 14 14 O 1.42105 * 106.40061 * 336.65985 * 13 3 2 15 15 O 1.42097 * 106.40390 * 203.74436 * 13 3 2 16 16 N 1.65592 * 107.21889 * 90.19809 * 13 3 2 17 17 C 1.46501 * 120.00024 * 65.74317 * 16 13 3 18 18 C 1.50699 * 109.47290 * 163.17853 * 17 16 13 19 19 C 1.40888 * 126.29341 * 90.02370 * 18 17 16 20 20 C 1.34851 * 107.42017 * 179.97438 * 19 18 17 21 21 N 1.36349 * 108.21427 * 359.97438 * 20 19 18 22 22 C 1.46507 * 125.63340 * 179.97438 * 21 20 19 23 23 C 1.34851 * 126.28638 * 269.70890 * 18 17 16 24 24 H 1.09003 * 109.47472 * 185.04750 * 1 2 3 25 25 H 1.09000 * 109.47191 * 305.04786 * 1 2 3 26 26 H 1.09003 * 109.47416 * 65.04646 * 1 2 3 27 27 H 1.08998 * 109.47172 * 239.99818 * 2 1 3 28 28 H 1.09001 * 109.47173 * 120.00118 * 2 1 3 29 29 H 1.09002 * 109.46450 * 40.85642 * 4 3 2 30 30 H 1.08995 * 109.47202 * 160.85816 * 4 3 2 31 31 H 0.96994 * 119.99735 * 180.02562 * 8 7 5 32 32 H 0.97006 * 120.00362 * 245.72955 * 16 13 3 33 33 H 1.09002 * 109.46873 * 283.17327 * 17 16 13 34 34 H 1.09003 * 109.47353 * 43.17355 * 17 16 13 35 35 H 1.08002 * 126.29281 * 359.93799 * 19 18 17 36 36 H 1.07992 * 125.89733 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.46578 * 89.97857 * 22 21 20 38 38 H 1.08997 * 109.46483 * 209.97718 * 22 21 20 39 39 H 1.08998 * 109.46906 * 329.97512 * 22 21 20 40 40 H 1.07999 * 125.89438 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3811 0.0000 4 6 2.1680 2.1052 -1.2648 5 6 3.4435 1.6748 -1.9420 6 1 4.0921 0.9553 -1.4647 7 6 3.7824 2.1996 -3.1711 8 7 2.9922 3.0755 -3.7527 9 14 5.3631 1.6656 -4.0111 10 1 5.3290 0.1994 -4.2441 11 1 5.4951 2.3701 -5.3116 12 1 6.5218 2.0023 -3.1454 13 16 2.4012 2.1240 1.4297 14 8 1.6717 1.4450 2.4427 15 8 2.2919 3.5216 1.1976 16 7 4.0025 1.8228 1.7251 17 6 5.0279 2.3764 0.8372 18 6 6.3689 2.3214 1.5227 19 6 7.2915 1.2582 1.4659 20 6 8.3578 1.6086 2.2134 21 7 8.1274 2.8496 2.7292 22 6 9.0404 3.5953 3.5991 23 6 6.9087 3.2834 2.2984 24 1 -0.3634 -1.0237 0.0904 25 1 -0.3633 0.5901 0.8413 26 1 -0.3634 0.4336 -0.9317 27 1 1.8932 -0.5138 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 1.3198 1.8838 -1.9127 30 1 2.2048 3.1766 -1.0679 31 1 3.2305 3.4444 -4.6175 32 1 4.2616 1.2800 2.4861 33 1 5.0658 1.7926 -0.0824 34 1 4.7831 3.4119 0.6004 35 1 7.1674 0.3323 0.9239 36 1 9.2420 1.0100 2.3750 37 1 9.7069 4.2048 2.9889 38 1 8.4642 4.2399 4.2628 39 1 9.6291 2.8959 4.1927 40 1 6.4534 4.2327 2.5387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337056887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:05 Heat of formation + Delta-G solvation = -27.263835 kcal Electronic energy + Delta-G solvation = -23370.087353 eV Core-core repulsion = 19926.738090 eV Total energy + Delta-G solvation = -3443.349263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 301.125 amu Computer time = 6.07 seconds Orbital eigenvalues (eV) -41.01595 -36.55226 -35.95004 -35.09404 -35.01168 -32.65034 -32.34669 -29.84961 -28.91135 -27.03310 -26.53226 -24.15606 -23.07545 -21.59464 -20.20229 -19.51319 -18.62813 -17.29204 -16.86402 -16.57552 -16.26970 -15.48537 -15.19803 -14.85308 -14.24045 -13.91647 -13.71647 -13.44396 -13.19602 -12.87022 -12.79315 -12.71931 -12.38983 -12.00784 -11.95489 -11.82096 -11.61693 -11.56475 -11.29282 -11.22572 -11.01827 -10.94935 -10.89203 -10.41515 -10.31731 -9.94014 -9.72451 -8.76551 -8.44455 -8.40254 -8.03654 -7.90962 -6.05923 -4.12090 1.42230 2.36591 3.00716 3.10247 3.31291 3.36211 3.38535 3.81672 4.33357 4.41373 4.63055 4.97798 5.06659 5.17753 5.20885 5.27754 5.32317 5.52657 5.55889 5.73488 5.85124 5.90417 6.04600 6.16307 6.25918 6.38399 6.43182 6.65405 6.71723 6.75604 6.82429 7.16669 7.34985 7.42153 7.46609 7.49444 7.60157 7.78038 7.92296 8.21808 8.92280 9.53377 11.01863 Molecular weight = 301.12amu Principal moments of inertia in cm(-1) A = 0.011161 B = 0.006521 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.144089 B = 4292.750538 C = 6036.488319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.244 3.756 5 C -0.538 4.538 6 H 0.065 0.935 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.272 1.272 13 S 2.786 3.214 14 O -1.004 7.004 15 O -0.984 6.984 16 N -1.125 6.125 17 C 0.187 3.813 18 C -0.166 4.166 19 C -0.181 4.181 20 C -0.027 4.027 21 N -0.457 5.457 22 C 0.076 3.924 23 C -0.002 4.002 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.904 -2.898 11.900 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.122 3.878 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.137 4.137 8 N -0.528 5.528 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.198 1.198 13 S 2.794 3.206 14 O -0.988 6.988 15 O -0.968 6.968 16 N -0.884 5.884 17 C 0.062 3.938 18 C -0.174 4.174 19 C -0.206 4.206 20 C -0.155 4.155 21 N -0.134 5.134 22 C -0.066 4.066 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.238 0.762 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 8.469 -1.932 12.318 15.073 hybrid contribution 1.410 -0.714 -0.560 1.676 sum 9.878 -2.646 11.759 15.584 Atomic orbital electron populations 1.22197 0.97122 1.01208 1.02274 1.20934 0.93459 0.82955 1.02109 1.57703 1.78772 1.22948 1.23974 1.19192 0.97351 0.92259 0.79048 1.21520 1.06519 1.25801 1.03855 0.91664 1.24936 0.96895 0.94841 0.97060 1.69931 1.37115 1.29038 1.16670 0.86694 0.84003 0.78713 0.78896 1.20290 1.21365 1.19752 1.01668 0.72725 0.73657 0.72594 1.93534 1.70594 1.76279 1.58407 1.93560 1.86053 1.31386 1.85763 1.56011 1.25037 1.67826 1.39482 1.19728 0.82357 0.99924 0.91820 1.19616 0.97777 0.95692 1.04289 1.20898 0.94711 1.00482 1.04540 1.21737 1.01763 0.87988 1.04054 1.43940 1.15531 1.14862 1.39040 1.21957 0.93638 0.97032 0.93971 1.21774 0.87062 1.01086 1.03333 0.92491 0.92761 0.92181 0.90117 0.92021 0.94569 0.93110 0.92611 0.76189 0.88764 0.90336 0.84572 0.82484 0.91225 0.90054 0.90196 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 37.15 0.38 -2.39 16 2 C 0.13 2.36 6.02 -4.05 -0.02 2.34 16 3 N -0.99 -20.65 2.84 -115.68 -0.33 -20.98 16 4 C 0.24 6.00 5.48 -5.19 -0.03 5.97 16 5 C -0.54 -13.70 8.13 -34.44 -0.28 -13.98 16 6 H 0.07 1.59 6.45 -52.49 -0.34 1.25 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.18 13.29 55.43 0.74 -24.45 16 9 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 13 S 2.79 56.42 6.11 -107.50 -0.66 55.77 16 14 O -1.00 -20.97 17.11 -57.17 -0.98 -21.95 16 15 O -0.98 -23.13 16.08 -57.17 -0.92 -24.05 16 16 N -1.12 -19.48 6.04 -11.65 -0.07 -19.55 16 17 C 0.19 3.41 6.64 -5.19 -0.03 3.37 16 18 C -0.17 -2.64 5.54 -104.82 -0.58 -3.23 16 19 C -0.18 -2.65 10.81 -39.78 -0.43 -3.08 16 20 C -0.03 -0.33 11.43 -16.75 -0.19 -0.52 16 21 N -0.46 -5.37 3.15 -124.53 -0.39 -5.76 16 22 C 0.08 0.54 11.12 59.85 0.67 1.21 16 23 C 0.00 -0.03 11.35 -16.75 -0.19 -0.22 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 28 H 0.06 0.99 7.62 -51.93 -0.40 0.60 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 1.38 6.84 -51.93 -0.36 1.02 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.41 6.13 8.66 -34.47 -0.30 5.83 16 33 H 0.09 1.88 5.51 -51.93 -0.29 1.59 16 34 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 35 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -32.68 347.97 -9.05 -41.73 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.85 Total: 7.37 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.81 Total: -8.85 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -0.05 Total: -70.74 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -1.90 Total: -46.01 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 56.42 SS G_CDS: -0.66 Total: 55.77 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.68 -9.05 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.464 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.07 seconds